Analysis of Genomic data is a rapidly evolving and plays a pivotal role in enhancing our understanding of biological processes at a molecular level. With the advent of high-throughput sequencing technologies, vast quantities of genomic data have been generated. However, transforming this data into functional insights remains a challenging task. Bioinformatics pipelines are essential in this respect, offering comprehensive frameworks for processing, analysing, and interpreting genomic datasets. These pipelines bring together various computational tools and algorithms, facilitating tasks such as sequence alignment, gene prediction, variant detection, and functional annotation. Despite existing advancements, optimizing pipelines for precision, efficiency, and scalability to interpret ever-expanding genomic information is an ongoing concern in the scientific community.
Recent studies have made significant advancements in bioinformatics pipelines, contributing to breakthroughs in understanding complex diseases, evolutionary biology, and personalized medicine. Integrating machine learning models into pipelines has improved the efficiency and accuracy of genomic analyses, enhancing our ability to derive meaningful conclusions from raw data. However, challenges linger, especially regarding the standardization of pipelines, integrating multi-omic data for a holistic approach, and overcoming computational limitations associated with large-scale data processing. Addressing these gaps is essential for realizing the full potential of genomic data and translating it into actionable biological insights.
This Research Topic aims to explore the development and optimization of bioinformatics pipelines tailored for functional genomic analysis. Key objectives include identifying innovative methods for integrating diverse computational tools, improving data preprocessing and annotation techniques, and developing robust algorithms for functional prediction. Additionally, the topic seeks to investigate solutions to technical challenges such as scalability, data integration, and standardization of bioinformatics workflows to ensure reproducibility and accuracy.
To gather further insights into bioinformatics pipelines and their applications, we welcome articles addressing, but not limited to, the following themes:
o The architecture and components of bioinformatics pipelines.
o Genomic Pipeline Benchmarks and Accuracy.
o Integration of artificial intelligence and machine learning for enhanced genomic analysis.
o Case reports demonstrating successful applications of bioinformatic pipelines in functional genomic research.
o Challenges and solutions in scaling pipelines for large genomic datasets.
o Future innovations, including real-time genomic data processing and multi-omic integration.
We invite a diverse range of article types including reviews, original research, methods papers, perspectives, and case reports, which contribute to advancing our knowledge of bioinformatics pipelines and their role in functional genomics.
Article types and fees
This Research Topic accepts the following article types, unless otherwise specified in the Research Topic description:
Brief Research Report
Case Report
Data Report
Editorial
FAIR² Data
General Commentary
Hypothesis and Theory
Methods
Mini Review
Articles that are accepted for publication by our external editors following rigorous peer review incur a publishing fee charged to Authors, institutions, or funders.
Article types
This Research Topic accepts the following article types, unless otherwise specified in the Research Topic description:
Important note: All contributions to this Research Topic must be within the scope of the section and journal to which they are submitted, as defined in their mission statements. Frontiers reserves the right to guide an out-of-scope manuscript to a more suitable section or journal at any stage of peer review.
