ORIGINAL RESEARCH article

Front. Agron., 03 March 2022

Sec. Weed Management

Volume 4 - 2022 | https://doi.org/10.3389/fagro.2022.811359

Impact of Cropping System Diversification on Vegetative and Reproductive Characteristics of Waterhemp (Amaranthus tuberculatus)

  • Department of Agronomy, Iowa State University, Ames, IA, United States

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Abstract

Corn- and soybean-dominated cropping systems create and maintain a favorable environment for summer annual weeds whose emergence and growth phenology are similar to these annual summer crops. Cropping system diversification can be an effective approach for controlling noxious weeds without increasing reliance on chemical herbicides. Diversification may be especially important for managing waterhemp, a dioecious, summer annual weed that is becoming increasingly prevalent in the US Corn Belt due to its life history characteristics and herbicide resistance profile. Compared to corn and soybean, alfalfa and oat emerge and establish earlier and are thus more competitive with warm-season weeds like waterhemp. Knowledge of vegetative and reproductive characteristics in a range of crop environments can be valuable for planning weed management strategies. However, most of the relevant characteristics for a population dynamics model were available in corn and soybean monocultures. We examined the relationship between waterhemp's aboveground mass and fecundity under four crop species' presence within three crop rotation systems: a 2-year sequence of corn and soybean; a 3-year sequence of corn, soybean, and oat intercropped with red clover; and a 4-year sequence of corn, soybean, oat intercropped with alfalfa, and alfalfa. All the rotation systems were treated with conventional or reduced rates of herbicides. We established eighteen linear equations to predict waterhemp's fecundity from dried aboveground mass in each crop and associated crop management program since measuring the latter allows for quicker estimation of fecundity compared to counting seeds on each individual plant. Rotation system and crop phase within rotation system had significant effects on all the response variables but weed control regime on some. The sex ratios at maturity were slightly female-biased in oat and alfalfa. Mature waterhemp plants were larger in corn and soybean than in oat and alfalfa. Oat and alfalfa were planted earlier than corn and soybean and successfully competed for resources against waterhemp despite the absence of herbicide or interrow cultivation. Frequent hay cuts in alfalfa served as physical weed control and contributed to suppressing waterhemp and other weeds substantially.

Introduction

Cropping system diversification can contribute to the effective suppression of noxious weeds such as velvetleaf (Abutilon theophrasti Medik.) (Westerman et al., 2005), giant foxtail (Setaria faberi Herrm.) (Liebman et al., 2014), giant ragweed (Ambrosia trifida L.) (Liebman and Nichols, 2020), and other species while complementing the effects of herbicides and physical weed control practices (Davis et al., 2012; Weisberger et al., 2019). Much of the effectiveness of diversified cropping systems for weed suppression can be attributed to differences among crop species in their phenologies and the management techniques applied to them. Differences in crop phenology and diverse management tactics can lead to a net loss in weed seed population density in the soil seed bank (Liebman and Gallandt, 1997; MacLaren et al., 2020) resulting from reductions in weed fecundity and increased consumption of weed seeds by granivores. The present study focuses on fecundity and other relevant individual- and population-level reproductive and vegetative characteristics of waterhemp [Amaranthus tuberculatus (Moq.) J. D. Sauer] in three rain-fed cropping systems differing in crop species richness and management practices.

Waterhemp is a dioecious, summer annual, dicotyledonous species that has been listed as one of the five most noxious weeds in row crops in the US based on the number of times this species appears in the literature (Johnson et al., 2009) and by growers' concern across 22 states in the US (Prince et al., 2012). At least 54 waterhemp populations are resistant to up to five herbicide modes of action as of 2021 (Heap, 2021). As a dioecious species, populations of waterhemp are expected to express a 1:1 male:female ratio (Grant, 1959; Costea et al., 2005; Heneghan and Johnson, 2017). However, waterhemp has three characteristics that favor female-biasedness under conditions of no stress, according to a study of 243 dioecious species excluding waterhemp (Field et al., 2013): (1) the male sex is heterogametic (Montgomery et al., 2021); (2) the species has abiotic pollination and seed dispersal; and (3) the fruits are non-fleshy (Costea et al., 2005). A stressed waterhemp population tends to be female-biased, with up to ten females per male (Pratt and Clark, 2001), which is consistent with the general pattern of sexually differentiated stress tolerance in herbaceous plants (38 species, excluding waterhemp, Juvany and Munné-Bosch, 2015). The sex ratio plasticity of waterhemp suggests that a stressed population, which is characterized by low density, may allocate available resources to produce more female offspring as an effort to increase population density, as observed in its close relative, Palmer amaranth (A. palmeri) (Korres and Norsworthy, 2017; Mesgaran et al., 2019). Knowing how sex ratios may deviate from parity under different biotic and abiotic conditions could inform how a waterhemp population might progress from one generation to the next.

Waterhemp management is agronomically challenging because of a suite of life history characteristics, including a persistent soil seedbank (Davis, 2008), an extended seedling emergence pattern (Buhler and Hartzler, 2001), high relative growth rate, high fecundity (Heneghan and Johnson, 2017), and rapid herbicide resistance development (Tranel, 2021). One year of prolific seed production can replenish a declining seedbank with more seeds than existed in the seedbank (Davis, 2008). Failing to control waterhemp can cause up to 43% yield loss in soybean [Glycine max (L. Merr.)] (Hager et al., 2002) and 74% yield loss in corn (Zea mays L.) (Steckel and Sprague, 2004). The accumulated mass and density of a weed population reflect the relative competitiveness against crops and the favorability of the environment, which, in turn, could signal the effectiveness of weed management throughout the season. From a planning perspective, population density at maturity and plant fecundity are useful for estimating the density of new seeds produced and potentially added to the soil seedbank, and for adjusting weed management regimes accordingly (Buhler et al., 1997). Waterhemp's fecundity has been studied in corn and soybean crops (Menalled et al., 2004; Nordby and Hartzler, 2004) but not in other crops' or in an extended crop rotation system. Alfalfa (Medicago sativa L.), red clover (Trifolium pratense L.), and oat (Avena sativa L.) are cool-season crops that can be grown in rotation sequences with corn and soybean, whereas waterhemp is a summer annual weed. Compared to corn and soybean, alfalfa, red clover, and oat seedlings emerge and establish earlier. Alfalfa, red clover, and oat also emerge and establish earlier than a number of summer annual weed species, including waterhemp (Horak and Loughin, 2000; Buhler et al., 2008).

In the present study, we examined the population aboveground mass, density and sex ratio, and the relationship between waterhemp's female size and fecundity when the weed grew in association with five crop species (corn, soybean, oat, red clover, and alfalfa) arranged in three rain-fed cropping systems. Assessing waterhemp characteristics in the presence of oat intercropped with red clover or alfalfa and alfalfa grown as a sole crop as well as corn and soybean could help to fill the gap of information concerning waterhemp performance in extended rotations. We hypothesized that the sex ratio of a waterhemp population deviated from parity depending on the environment's favorability, but how much and to which direction the shift would occur would depend on how much the studied population was suppressed. In addition to informing management, individual- and population-level characteristics would provide useful contextual details for sex ratio comparison. Counting seeds for waterhemp fecundity assessment is time-consuming and laborious, so it would be convenient to extrapolate fecundity from plant mass. We hypothesized that regression relationships with which to predict fecundity from plant mass could be identified but that such relationships would differ among treatments, due to differences in crop phenology, crop-weed competition, and management practices.

Materials and Methods

Experiment Design

Empirical measurements of waterhemp biomass and fecundity were made in 2018 at Iowa State University's Marsden Farm in Boone County, Iowa, USA, (42° 01'N, 93° 47'W, 333 m above sea level). The site description and crop management practices were described by Liebman et al. (2021). The experiment was initiated in 2001 on a 9-hectare field to compare the performance of three different crop rotations. In 2008, the experiment was reorganized to allow comparison of two contrasting weed management regimes in each of the three rotation systems. Since 2001, within each of the four blocks, plots were randomly assigned to one of the crop phases within one of three rotations.

In the present study, the experiment comprised of 72 experimental units, each 9 x 84 m. The experimental units (eu) were arranged in a randomized complete block split-plot design with four replications. The experiment was two-way factorial, with crop rotations comprising main plots and weed management regimes comprising split plots. In any year, all crop phases within the same rotation were present in different plots in the same replicate block to avoid confounding effects of the year with those of the treatments (Payne, 2015). The 2-year, 3-year, and 4-year crop sequences included in the study are shown in Table 1. The conceptual diagram for the experiment is shown in Figure 1. Alfalfa in this experiment was sown with oat. Oat was harvested for grain in 2018 and for hay in 2019 and alfalfa was retained over the winter and used as a hay crop the following year. Oat in our experiment was intended for grain harvest but was harvested for hay in 2019 due to severe hail damage to the crop and subsequent weed infestation. In the conventional weed management regime, herbicide was broadcast on the whole area that was planted to corn, whereas in the low herbicide regime, herbicide was applied in 38-cm bands over corn rows, and interrow areas were cultivated. Even though corn was the only crop that received the contrasting weed management regimes, all other crops were identified with the weed management applied to the corn phase (hereafter referred to as corn weed management), to which they followed. To improve weed control efficacy, herbicides used for soybean differed between 2018 and 2019. Details concerning crop genotypes and management practices are shown in Table 2.

Table 1

2-year2-year3-year3-year3-year4-year4-year4-year4-year
2018cornsoybeancornsoybeanoat/red clovercornsoybeanoat/alfalfaalfalfa
2019soybeancornsoybeanoat/red clovercornsoybeanoat/alfalfaalfalfacorn

Crop phases of the three rotation systems present in a replicate block in 2018 and 2019.

Figure 1

Table 2

RotationCropHybrid or cultivarPlanting date1Harvest date2Seed densityCrop density3InterrowCultivationHerbicide (kg ai/ha)
2018 season
seeds m−2plants m−2cm
AllcornEpley 1420May. 8Oct. 308876low: Jun. 4; conv: nonelow: tembotrione (0.054); conv: PRE thiencarbazone methyl (0.037), isoxaflutole (0.093); POST: mesotrione (0.105), nicosulfuron (0.053)
AllsoybeanLatham 2758 R2May 17Oct. 29351876nonePRE: flumioxazin (0.096); POST: glyphosate as potassium salt (1.540), lactofen (0.140)
kg m−2plants m−2cm
3- and 4-yearoatINO9201Apr. 24Jul. 200.009225 (3-year) and 236 (4-year)20nonenone
3-yearred cloverMammoth RedApr. 240.00218720nonenone
4-yearalfalfa55H94Apr. 12, 2017Jun. 4, Jul. 9, and Sep. 100.00215420nonenone
2019 season
seeds m−2plants m−2cm
AllcornEpley 1730Jun. 3Nov. 68876nonelow: tembotrione (0.0054); conv: PRE: thiencarbazone methyl (0.037), isoxaflutole (0.093); POST: mesotrione (0.105), nicosulfuron (0.053)
AllsoybeanLatham 2758 R2Jun. 10Oct. 18353176nonePRE: flumioxazin (0.096); POST: glufosinate ammonium (0.594), clethodim (0.136)
kg m−2plants m−2cmnonenone
3- and 4-yearoatINO9201Apr. 16Jul. 24 and 290.009366 (3-year) and 330 (4-year)20nonenone
3-yearred cloverMammoth RedApr. 160.00221920nonenone
4-yearalfalfaWS LeafguardApr. 24, 2018Jun. 7, Jul. 12, and Aug. 260.00217620nonenone

Crop varieties, and dates and rates for management operations in 2018 and 2019.

1

Alfalfa crops harvested in 2018 and 2019 were planted in 2017 and 2018, respectively.

2

Oat crop harvests in 2019 were done in two days because of equipment complications.

3

Soybean germination in 2018 was lower than in 2019 because of poor drainage in the soil. Oat and red clover were intercropped in the 3-year system. Oat and alfalfa were intercropped in the third year of the 4-year system, and alfalfa was overwintered after oat harvest.

Sample Collection

Samples for all response variables were collected at least 3 m in from the border of each eu to avoid the possible edge effects. For each response variable, samples were collected from eight quadrats per eu to account for the patchiness of the weed populations. In 2018, the sex ratio was assessed by scouting the whole eu to obtain higher degrees of freedom. The date of sample collection and total sampled area for population- and individual-based measurements are shown in Table 3.

Table 3

20182019
MeasurementCropCollection dateSampled area (m2)Collection dateSampled area (m2)
Population above-ground masscornSep. 11, 12, 13148.3Sep. 17, 18, 19148.3
soybeanSep. 17, 19, 21148.3Sep. 30148.3
oatSep. 27; Oct. 4, 15, 16, 18, 1916Sep 23, 25, 26; Oct. 3, 4, 717.9
alfalfaSep. 26, 27; Oct 16, 1916Sep 24, 25; Oct. 3, 717.9
Population densitycornSep. 11, 12, 13148.3Sep. 17, 18, 19148.3
soybeanSep. 17, 19, 21148.3Sep. 30148.3
oatSep. 27; Oct. 4, 15, 16, 18, 1916Sep 23, 25, 26; Oct. 3, 4, 717.9
alfalfaSep. 26, 27; Oct 16, 1916Sep 24, 25; Oct. 3, 717.9
Population sex ratiocornSep. 10, 11, and 12729Sep. 17, 18, and 19148.3
soybeanSep. 17 and 30729Sep. 30148.3
oatOct. 4, 15, and 18729Sep. 24, 25, 26, 30, Oct. 1 and 217.9
alfalfaNov. 1729Oct. 3 and 417.9
Individual female above-ground masscornOct. 18, 19, 22, 24, and 25729Sep. 17, 18, and 19148.3
soybeanOct. 4, 15, and 18729Sep. 30148.3
oatOct. 29, 30, 31, Nov. 1729Sep. 24, 25, 26, 30, Oct. 1 and 217.9
alfalfaNov. 1729Oct. 3 and 417.9
Individual female fecunditycornOct. 24 and 25729nonenone
soybeanOct. 4, 15, and 18729nonenone
oatOct. 29, 30, 31, Nov. 1729nonenone
alfalfaNov. 1729nonenone

Sampling dates and areas in 2018 and 2019.

Population Sex Ratio

In 2018, we scouted each eu until 100 or all the available plants (if the number of plants available was fewer than 100) were sexed to obtain greater degrees of freedom. We determined the sex of 252, 1999, 2426, and 895 waterhemp plants in alfalfa, oat, soybean, and corn, respectively. In 2019, eight quadrats per eu were marked at the beginning of the season and fixed until crop harvest for a census. Overall, 413, 1331, 0, and 553 waterhemp plants were sexed in alfalfa, oat, soybean, and corn, respectively. Zero observations in all the soybean eu's resulted from high herbicide efficacy, so the 2019 data was imputed (Appendix B).

Population Aboveground Mass and Density

The quadrats were randomly placed in a 4 x 2 grid at the sampling date and were non-overlapping with the 2019 census quadrats. The number of plants and the total dried biomass was tallied by eu.

Individual Female Aboveground Mass and Fecundity

The maturation of waterhemp seeds can take 20 days from pollination (Bell and Tranel, 2010). We harvested female waterhemp plants as close to crop harvest as possible to maximize the number of mature seeds on mother plants. Prior to sample collection in an eu, the whole area was visually inspected to estimate the difference in plant sizes. Specimens were then collected to best capture the range of within-eu variance. Given the time and labor constraints, we planned to collect eight intact plants from each eu, which was equivalent to 576 plants in total. Plants had to be identifiable per Uva et al. (1997). By the time the seeds reached maturity, 389 intact plants were collected and processed. No intact plants were collected from two eu's. Plant specimens were contained individually in tightly knitted fabric bags to prevent seed loss. The detailed procedure for seed cleaning and counting is provided in Appendix A.

Model Fitting and Selection

Waterhemp survival in soybean was the greatest among all crops in the experiment in 2018 but the least in 2019 because of the use of different herbicide active ingredients. Given year-to-year differences in the sampling scheme and herbicide efficacy, the two years of data were thus analyzed separately for all the response variables in R version 4.1.2 (R Development Core Team, 2021). The data was curated with the tidyverse package version 1.3.1 (Wickham et al., 2019).

In 2018, 2% of the sex ratio data was missing due to zero observations in one eu, so complete case analysis, in which eu's of known sex ratio were retained while unknown sex ratio were removed from the data set, was used. In 2019, 22% of the sex ratio data was missing, so the data were imputed with predictive mean matching (PMM) method with the mice package version 3.14.0, (van Buuren and Groothuis-Oudshoorn, 2011) to optimally replace missing data with meaningful values without altering the observed sex ratios (Appendix B). Any model that involved the imputed data was fitted on all the produced (imputed) data sets, and the results were pooled (White et al., 2011).

Block was included in all models as a fixed factor because blocks were used to control the different field conditions across sections, and thus to reduce variance between eu's (Dixon, 2016). All the models were first fitted full, with block, corn weed management and crop identity, the interaction of corn weed management and crop identity, and covariates when applicable. Crop identities are the combination of crop species and the rotation to which they belonged. The within-eu variation was random and absorbed in the random error term in each model equation. The fitted models were linear (lm), generalized linear (glm), or generalized least square (gls) depending on the data structure and the nature of the response variable. The response and quantitative variables were appropriately transformed as needed to obtain homogeneous variances. Half of the minimum, non-zero value among all the observations was added to all the observations before ln-transformation to replace zeros. Response variables that were all non-zero were ln-transformed without adjustment. The goodness of fit of each model was assessed with diagnosis plots and mean squared error (MSE) of the variance.

The marginal means of each response variable were estimated with the emmeans function from the emmeans package version 1.7.2 (Lenth et al., 2022) to accommodate non-integer and unequal degrees of freedom among groups. Marginal means were averaged over blocks for post-ANOVA or post-ANCOVA contrasts and over factors whose effects were non-significant. Degree of freedom adjustment was done with the Satterthwaite method for the gls and Kenward-Roger method for the glm and lm models. ANCOVA (analysis of covariance) was applied to examine the effect of treatments on the relationship between female aboveground biomass and fecundity and between population sex ratio and biomass or density at maturity. ANCOVA combines regression and ANOVA (analysis of variance) to improve precision in mean estimation as compared to ANOVA estimation (Yang and Juskiw, 2011). Type III sums of squares error were calculated with the emmeans‘s joint_tests function to accommodate unbalanced data with interaction when occurred and to avoid misleading assessment of factors' effects based on their sequential order in the model.

Population Sex Ratio at Maturity

A logistic regression model was fitted with the glm command and family = quasibinomial(link = logit) argument specification to analyze sex ratio. The quasibinomial family with follow-up F-test was used to accommodate overdispersion and logit link function transformed the sex ratio using the natural logarithm (ln) (Crawley, 2013).

where,

Sijk is the number of female plants among all the Nijk plants in block kth under crop identity ith and corn weed management jth,

is the logit transformation of Sijk,

μ is the overall mean female proportion, the intercept,

αi is the effect of the ith crop identity,

γj is the effect of the jth corn weed management,

bk is the block effect,

αiγj is the interaction effect of crop identity and corn weed management, and

ϵijk is the random error.

Population Aboveground Mass and Density

A linear regression model was fitted with the lm command on each of the two variables, population aboveground mass or stand density. The general model equation for these response variables is

where,

Yijk is either the ln-transformed population aboveground mass or ln-transformed stand density in block kth under crop identity ith and corn weed management jth, and other terms as defined in Equation (1).

ANCOVA of Population Sex Ratio, Aboveground Mass, and Density

The regression of sex ratio against population density or biomass was extended from the ANOVA of sex ratio Equation (1).

where,

δ is the effect of the covariate,

Dijk is the natural log-transformed population stand density in block kth under crop identity ith, and corn weed management jth, the covariate, and other terms as defined in Equation (1).

Individual Female Aboveground Mass and Fecundity

A compound symmetric linear regression model (with nlme package's gls command was first fitted for each of the response variables, individual aboveground mass and fecundity to accommodate negative variance that occurred when the within-eu variance was larger than the between-eu variance and correlated errors occurred within blocks (version 3.1-153, Pinhero et al., 2022). The corCompSymm argument in the gls command was specified by identifying unique combinations of block and treatment. The model in this exercise is of the same form as the model in Equation (2):

where,

Yijkl is either the ln-transformed aboveground mass or ln-transformed number of seeds of female plant lth in block kth under crop identity ith and corn weed management jth,

ϵijkl is the random error, and other terms as defined in Equation (1).

Individual Female Aboveground Mass and Fecundity relationship

The regression of individual plant fecundity against individual plant aboveground mass was combined from the ANOVA of each (Equation 4) to establish a relationship between the two variables:

where,

Yijkl is the ln-transformed number of seeds of plant lth in block kth under crop identity ith and corn weed management

is the ln-transformed dried aboveground mass of plant lth in block kth under crop identity ith, and corn weed management jth, the covariate, and other terms as defined in Equation (1).

If the MSE of the model described in Equation (5) were smaller than that of the model described in Equation (4), the former model would be considered better for estimating the number of seeds produced by an individual waterhemp plant.

We tested the assumption that all the regression lines were parallel. Violation of this assumption required an individual regression line for each treatment. To test model robustness, samples in each treatment were pooled across four blocks and divided into four size-based subsets. Samples from each subset were then randomly placed into the testing and training sets using the 80 testing : 20 training ratio. A model was considered to perform well if the data points in the testing set blended well with the data points from the training set. A robust model could be used to predict plant fecundity with new biomass data.

Results

Using ggResidpanel version 0.3.0 (Goode and Rey, 2019), boot version 1.3-28 (Canty and Ripley, 2021), and two customized functions for model diagnosis, no predictable pattern in the plots of residuals vs. predicted values suggests that the analysis models fit the data well (Details are provided in Nguyen and Liebman, 2022a). In all rotations, all the crop yields were comparable to those of Iowa and Boone County where the experiment is situated (Hunt et al., 2020; Nguyen and Liebman, 2022b). Tables were compiled with kableExtra version 1.3.4 (Zhu et al., 2021). Figures were made with emmeans version 1.7.2 (Lenth et al., 2022) and ggplot2 version 3.3.5 (Wickham et al., 2016).

Population Aboveground Mass and Stand Density

In both years, population aboveground mass and stand density were strongly influenced by crop identity (Table 4). The rotation system in which a crop was grown also affected population aboveground mass and stand density, although not consistently between years (Table 5).

Table 4

20182019
Population
aboveground mass
Population
stand density
Population
aboveground mass
Population
stand density
Source of variationdf1df2F.valuep.valueF.valuep.valueF.valuep.valueF.valuep.value
Crop ID85121.23<0.000127.45<0.000142.14<0.000184.03<0.0001
Corn weed management1510.410.52410.870.35551.230.27300.300.5889
Crop ID x Corn weed management8510.400.91390.960.47361.350.24150.630.7486

ANOVAs of crop identity and corn weed management effects on waterhemp population aboveground mass and stand density.

Crop identity was the only influential factor on both population aboveground mass and stand density in 2018 and 2019.

Table 5

20182019
Population
aboveground mass
Population
stand density
Population
aboveground mass
Population
stand density
ContrastRatiop.valueRatiop.valueRatiop.valueRatiop.value
(A) - Rotation system effects
C2 vs C312.540.12372.380.29900.840.96801.190.9284
C2 vs C423.120.04301.840.543510.610.005414.45<0.0001
C3 vs C41.840.87980.780.898312.650.002612.11<0.0001
S2 vs S36.420.31512.070.42586.270.03692.600.1265
S2 vs S42.450.75971.290.89766.270.03692.600.1265
S3 vs S40.380.72980.620.69631.001.00001.001.0000
O3 vs O40.820.87741.780.32350.140.00960.290.0132
(B) - Crop species effects
oat vs soybean3.150.504047.18<0.00012,580.00<0.00011330.00<0.0001
oat vs corn5,795.38<0.0001222.88<0.000185.30<0.000132.60<0.0001
oat vs alfalfa831.33<0.000129.84<0.00018.340.00712.390.1712
soybean vs corn1,840.55<0.00014.720.00010.03<0.00010.02<0.0001
soybean vs alfalfa264.02<0.00010.630.76600.00<0.00010.00<0.0001
corn vs alfalfa0.140.25090.130.00050.100.00140.07<0.0001

Rotation system and crop species effects on population aboveground mass and stand density.

Some zero ratios are due to rounding.

C2: corn in the 2-year rotation; C3: corn in the 3-year rotation; C4: corn in the 4-year rotation; S2: soybean in the 2-year rotation; S3: soybean in the 3-year rotation; S4: soybean in the 4-year rotation; O3: oat in the 3-year rotation; and O4: oat in the 4-year rotation.

In 2018, population aboveground mass in the same crop species was comparable across rotations except for corn grown in the 2-year (C2) vs. 4-year rotation (C4) (p-value = 0.043). In 2019, population aboveground mass in the same crop was different across rotations, except for corn in the 2-year (C2) vs. 3-year rotation (C3) (p-value = 0.968) and soybean in the 3-year (S3) vs. 4-year rotation (S4) (p-value = 1). Averaged across rotations, population aboveground mass was comparable in 2018 for corn vs. alfalfa (p-value = 0.2509) and soybean vs. oat (p-value = 0.504), but 10- to 5795.38-fold different in the other ten pairs of comparison (p-values <0.01).

In 2018, population stand density in the same crop species was comparable across the rotations. In 2019, population stand density in the same crop species was comparable for soybean (p-values = 0.1256 and 1) and C2 vs. C3 (p-value = 0.9284), but significantly different for the other corn comparisons and for oat in the 3-year (O3) vs. 4-year rotation (O4). Averaged over rotations, population stand density was comparable in 2018 between soybean and alfalfa (p-value = 0.766), but 5- to 1330-fold different in the other eight pairs of comparison (p-values <0.001).

In 2018, population aboveground mass was the highest in soybean and oat (Figure 2A) because soybean weed management was ineffective and herbicide was intentionally not applied in oat. The legacy of an ineffective weed management program in 2018 soybean plots was observed in 2019 oat plots where population aboveground mass and stand density were the highest among all the crop identities (Figure 2B). High stand density in 2019 oat plots was also due to uneven oat establishment. The change in 2019 in weed management for soybean substantially reduced the waterhemp pressure on soybean (Figures 2B,D).

Figure 2

Population Sex Ratio

Population stand density was included to improve the precision of estimates of population sex ratios (Tables 6A,C). The population sex ratio in 2018 differed significantly among treatments, at different population stand densities within each treatment (p-value = 0.0155, Figure 3 and Table 6). Therefore, sex ratios in the same treatment were evaluated at four population densities, i.e., 1, 5, 50, and 500 plants/m2, to illustrate that three-way interaction (Figure 3). Female-biasedness was more likely if a waterhemp population was grown in oat and alfalfa. None of the waterhemp populations grown in corn and soybean expressed gender biasedness. It is unclear whether the corn weed management program had a significant effect on gender biasedness given the magnitude of the variance (Figure 3).

Table 6

Source of variationdf1df2F.valuep.value
(A) no covariate. Residual deviance = 165.9, dispersion = 3.32.
Crop ID8Inf8.45<0.0001
Corn weed management1Inf0.010.9317
Crop ID x Corn weed management8Inf0.460.8862
(B) with population aboveground mass covariate. Residual deviance = 104.3, dispersion = 3.24.
Crop ID8Inf1.020.4155
Corn weed management1Inf0.000.9601
Population aboveground mass1Inf1.510.2198
Crop ID x Corn weed management8Inf0.710.6847
Crop ID x Population aboveground mass8Inf1.040.4038
Corn weed management x Population aboveground mass1Inf2.850.0916
Crop ID x Corn weed management x Population aboveground mass8Inf1.240.2713
(C) with population stand density covariate. Residual deviance = 82.12, dispersion = 2.54.
Crop ID8Inf0.960.4679
Corn weed management1Inf0.930.3346
Population stand density1Inf2.460.1169
Crop ID x Corn weed management8Inf1.460.1675
Crop ID x Population stand density8Inf1.710.0896
Corn weed management x Population stand density1Inf5.160.0231
Crop ID x Corn weed management x Population stand density8Inf2.360.0155

ANOVAs of crop identity, herbicide, and covariate effects on population sex ratio using 2018 data.

With population aboveground mass covariate included (B), crop identity was the only influential factor on population sex ratio. With population stand density covariate included (C), sex ratio responded differently in each treatment and stand density combination.

A zero F.value is due to rounding.

Figure 3

We defined a useful imputed data set to be a set that resulted in fully estimable marginal means for sex ratio comparison across all treatments, which was achievable with non-zeros in female and male categories in at least one replication among the four blocks for the missing observations in the 2019 original sex data. Unlike the 2018 data, the sex ratio in 2019 was analyzed without the covariates because none of the covariates improved the goodness of fit for the analysis model. With m = 24, five imputed data sets were useful (Appendix B). The significance and influence of treatment factors and their interaction in the imputed data sets for waterhemp sex ratio in 2019 were consistent with those of the 2018 data (Figure 4). In 21 out of 24 sets, sex ratio in 2019 was affected by crop identity (Figures 4B,C). Female biasedness was observed in oat and alfalfa but not in corn and soybean (Figure 4A).

Figure 4

Individual Female Aboveground Mass and Fecundity

Individual female aboveground mass and fecundity were affected by rotation, crop species, and corn weed management (Table 7). Crop identity was more influential on female aboveground mass and fecundity than corn weed management regime, but the effect of crop identity differed between corn weed management regimes (Tables 8A,B). Differences in relative female size and fecundity across rotation by herbicide treatments were attributed to the relative size and fecundity differences when the waterhemp populations grew in different crops' presence.

Table 7

Female individual aboveground massIndividual fecundity
Corn weed management:
conventional
Corn weed management:
low
Corn weed management:
conventional
Corn weed management:
low
ContrastRatiop.valueRatiop.valueRatiop.valueRatiop.value
(A) - Rotation system effects
C2 vs C32.620.13354.290.00643.950.08207.290.0032
C2 vs C42.120.34022.270.16133.000.23672.550.2288
C3 vs C40.810.93020.530.40700.760.92400.350.2253
S2 vs S30.180.00760.330.20050.070.00100.470.6323
S2 vs S40.700.78850.760.90680.600.74511.190.9782
S3 vs S43.810.02682.270.35538.450.00452.510.4525
O3 vs O40.930.86950.390.04570.620.43630.270.0321
(B) - Crop species effects
Soybean vs corn8.64<0.000135.10<0.000117.51<0.000196.74<0.0001
Soybean vs oat36.55<0.000130.29<0.0001110.44<0.000155.97<0.0001
Soybean vs alfalfa128.16<0.0001133.62<0.00015423.32<0.00016,857.12<0.0001
Corn vs oat4.230.00010.860.96166.310.00010.580.4904
Corn vs alfalfa14.83<0.00013.810.0099309.73<0.000170.88<0.0001
Oat vs alfalfa3.510.03244.410.006249.11<0.0001122.51<0.0001

Rotation system and crop species effects on individual female aboveground mass and fecundity.

C2: corn in the 2-year rotation; C3: corn in the 3-year rotation; C4: corn in the 4-year rotation; S2: soybean in the 2-year rotation; S3: soybean in the 3-year rotation; S4: soybean in the 4-year rotation; O3: oat in the 3-year rotation; and O4: oat in the 4-year rotation.

Table 8

Source of variationdf1df2F.valuep.value
(A) - Individual female aboveground mass. MSE = 2.02
Crop ID846.5648.83<0.0001
Corn weed management1158.2313.570.0003
Crop ID x Corn weed management873.812.360.0255
(B) - Individual fecundity. MSE = 3.43
Crop ID841.6772.13<0.0001
Corn weed management1146.2914.640.0002
Crop ID x Corn weed management863.872.980.0067
(C) - Individual fecundity with individual aboveground mass covariate.
MSE = 1.01
Crop ID867.8416.53<0.0001
Corn weed management1312.012.920.0886
Biomass1349.07483.09<0.0001
Crop ID x Corn weed management8151.001.660.1136
Crop ID x Biomass8300.152.990.0031
Corn weed management x Biomass1349.202.840.0931
Crop ID x Corn weed management x Biomass8333.062.490.0122

ANOVAs for the effects of crop identity, corn weed management, and female aboveground mass on individual female aboveground mass (A), fecundity (B), and fecundity with aboveground mass covariate (C).

Each combination of crop identity and corn weed management affected female aboveground mass and fecundity differently.

Individual female aboveground mass was comparable in most pairwise comparison of the same crop species in different rotations, except S2 vs. S3 (p-value = 0.0076) and S3 vs. S4 (p-value = 0.0268) that followed corn under conventional weed management and C2 vs. C3 (p-value = 0.0064) under low weed management. Averaged over rotations, individual female aboveground mass was 3.51- to 133.62-fold different across each pair of comparison (p-values <0.05), except for corn under low weed management vs. the succeeding oat (p-value = 0.9616).

Individual fecundity was comparable in most pairwise comparison of the same crop species in different rotations, except S2 vs. S3 (p-value = 0.001) and S3 vs. S4 (p-value = 0.0046) that followed corn under conventional weed management and C2 vs. C3 under low weed management (p-value = 0.0032), and O3 vs. O4 that followed corn under low weed management (p-value = 0.0321). Averaged over rotations, individual fecundity was comparable between corn under low herbicide and oat in the same system (p-value = 0.4904) but was 6.31- to 6857.12-fold different in other pairs of comparison (p-values ≤ 0.0001).

Effects of Weed Management Regimes and Rotations on Female Aboveground Mass and Fecundity Relationship

Since the treatment effects were statistically significant for both female aboveground mass and fecundity (Table 8), we proceeded with finding the slopes and intercepts for each linear regression of fecundity against biomass. Different slopes were specified by including interaction terms between the covariate and treatment factors. A regression slope for each treatment was necessary. The training and testing sets' data points were well mingled indicated that the established equations were robust (Figure 5). That the equations in Table 9 could predict waterhemp fecundity parsimoniously from dried aboveground mass using the relevant context of crop and crop management. The presented means and SEs for the estimated intercepts and slopes were established from the whole data set.

Figure 5

Table 9

EffectInterceptSlopeR2
Crop IDCorn weed managementEstimateStd.errorEstimateStd.error
C2conventional6.070.181.240.080.89
C2low5.880.221.220.110.78
S2conventional6.300.311.140.110.89
S2low7.070.220.970.070.96
C3conventional5.860.251.260.140.83
C3low5.110.350.660.210.33
S3conventional7.250.440.960.090.84
S3low4.890.821.470.200.78
O3conventional5.730.241.290.220.60
O3low5.640.210.600.180.29
C4conventional5.900.601.260.290.60
C4low6.040.161.410.100.90
S4conventional7.570.410.750.120.67
S4low7.330.560.740.190.58
O4conventional6.050.181.010.160.66
O4low6.290.140.920.130.70
A4conventional3.060.670.800.350.21
A4low1.970.430.500.200.23

Means and SEs for estimated linear regression of waterhemp fecundity index [ln(seeds + 1)] vs. biomass index [ln(gram + 0.005)] intercepts and slopes, accompanied by the R2 values of each equations.

The abbreviations in the Crop ID column are crop identities, which are the combinations of the first letter in crop species names and the rotation to which the crops belonged. R2 values were calculated from the whole data set (training and testing sets), and thus, were slightly different from those in Figure 5.

C2: corn in the 2-year rotation; C3: corn in the 3-year rotation; C4: corn in the 4-year rotation; S2: soybean in the 2-year rotation; S3: soybean in the 3-year rotation; S4: soybean in the 4-year rotation; O3: oat in the 3-year rotation; O4: oat in the 4-year rotation; and A4 alfalfa in the 4-year rotation.

Discussion

Results of this study indicate that waterhemp was affected by crops and crop management in multiple ways, including a reduction in individual biomass and fecundity to the point of non-existence as occurred in 2019 soybean plots. Despite the 2018 and 2019 data being overdispersed, which resulted in high residual deviance, the significance of treatment effects was consistent. Crop identity was the most influential factor for all responses. Some covariation relationships were observed: population stand density affected sex ratio and female aboveground mass was a reliable predictor for fecundity.

Waterhemp is a small-seeded species that is more sensitive to environmental stress than larger-seeded species (Harbur and Owen, 2004). In the present study, the number of stress and mortality factors likely increased as crop diversity increased temporally and spatially (Martin and Felton, 1993). Stress and mortality factors arose from the strategic cropping system designs that employ crops of different phenology, management requirements, and relative competitiveness with weeds (Liebman and Janke, 1990; Liebman and Dyck, 1993).

The two summer annual row crops in our study, corn and soybean, differed from the cool season and perennial crops, oat, red clover, and alfalfa with regard to the strongest selection pressure against weeds: herbicides. In corn (C2, C3, and C4), weeds were controlled with broadcast herbicide (conventional), or a combination of banded herbicide (38-cm strips on top of crop rows) and interrow cultivation. In soybean (S2, S3, and S4), weeds were controlled with broadcast herbicide as in conventional corn, with different active ingredients. In contrast, in the O3, O4, and A4 treatments, no herbicide or cultivation was applied, but those three crops were strategically introduced to the 3-year and 4-year rotations for their potential allelopathic and shading effects (Liebman and Dyck, 1993; Singh et al., 2003). The spring establishment of O3 and O4 and overwintering of A4 treatments gave the crops a headstart for resource competition against waterhemp, a summer annual weed that emerged later (Hartzler et al., 2004). The timing of oat harvest in late July matched waterhemp's early reproductive stage (Horak and Loughin, 2000; Buhler et al., 2008) and the resulting mechanical damage at this stage reduced the weed's reproductive potential. Intercropping oat and alfalfa can produce stronger weed suppression than might be achieved by each species grown as a sole crop (Lanini et al., 1992), whereas the effects of intercropping oat with red clover can be more variable (Samson et al., 1990). For established alfalfa in the 4-year rotation, three to four hay cuts per crop season also served as a significant means of physical control and to reduce waterhemp reproductive potential.

High waterhemp population stand densities in oat resulted from highly productive plants in the preceding corn and soybean phases of the rotation and signaled abundant replenishment of soil seedbanks. Dyke and Barnard (1976) found that a clover and cereal intercrop substantially reduced weed emergence whereas Heggenstaller et al. (2006) found that a triticale (x Triticosecale Wittmack) and red clover intercrop increased weed seedling recruitment. Taking these findings with the present study's observation that higher waterhemp population stand densities and lower waterhemp aboveground mass were found in small grain and forage crops than in row crops, it is possible that cold-tolerant crops can be used to stimulate and induce fatal germination to deplete the soil seedbank (Davis and Liebman, 2003; Gallandt et al., 2005). Eventually, as more mortality and stress factors are imposed on emerged weeds via various control methods, such as allelopathy and mechanical damage via crop harvest, those emerged plants might be expected to contribute fewer seeds to the soil seedbank.

Waterhemp populations in three of the treatments, O3, O4, and A4, were slightly female-biased. Waterhemp populations in other treatments were even in sex ratio, which might be attributed to a more stressful conditions in small grain and forage crops than in row crops. A larger data set might help reducing the variance in sex ratio and provide a clearer understanding of the effect of corn weed management program on waterhemp sex ratio in subsequent oat and alfalfa phases. Systematic analysis is needed to identify the contribution of each stressor on waterhemp development and population dynamics. The 2019 sex ratio data were imputed without 2018 input but returned consistent conclusions on treatment effects, as compared to 2018. This consistency suggests an acceptable precision of the analysis model and the imputation algorithm. Since pmm seeks to fill in missing values with placeholders without changing the overall mean, it is reasonable to assume that the sex ratios in soybean eu's were even. The high herbicide efficacy in soybean was the strongest selection pressure on the exposed waterhemp populations.

Our analysis indicated that female aboveground mass could be used to predict fecundity parsimoniously. The strong evidence of the significant interaction effect of weed management regime and crop identity on waterhemp fecundity justified the use of separate equations for each treatment. Since different sources of stress were introduced in the small grain and forages than in row crops, we attributed female-biasedness and lower fecundity in forages than in row crops to female herbaceous plants outperforming males under abiotic and biotic stresses (Juvany and Munné-Bosch, 2015). The stand density and sex ratio data in this study does not provide sufficient information to establish a relationship between them, as was established between individual female biomass and fecundity. It would be helpful to explore the population stand density and sex ratio relationship with a bigger data set.

In the present study, using mother plant reproduction potential (aboveground mass) gives a rough estimate of the number of seeds being added to the soil seedbank. Additionally, the total number of seeds produced at the end of the season in each treatment depended on the parent plant density and population sex ratio. The possibility of post-harvest seed loss due to seed predators under different ground cover conditions adds to the complexity of seedbank dynamics. Red clover that remained after oat harvest and alfalfa living mulch may enhance granivore activities (Davis and Liebman, 2003; Gallandt et al., 2005). Heggenstaller et al. (2006) found increased predation of velvetleaf (Abutilon theophrasti Medik) and giant foxtail (Setaria faberi Herrm) seeds in more diverse cropping systems than in shorter corn-soybean rotations. Overwintering crops such as alfalfa delayed pigweed (Amaranthus quitensis H.B.K.) emergence (Huarte and Arnold, 2003) and can exude allelochemicals for weed suppression (Miller, 1996). Compared to the bare ground after corn and soybean production, the post-harvest environment in oat and alfalfa may induce more seed loss due to predation (Gallandt et al., 2005). Waterhemp was not included in the Heggenstaller et al. (2006) study, but waterhemp seeds are preferred over other species' seeds by field crickets and ground beetles (van der Laat et al., 2015) so it is likely that the small grain and forage crops in the present study enhanced waterhemp seed predation.

The key take-away messages from this present study are that: (1) waterhemp reproductive potential can be effectively suppressed without herbicide with the integration of cool season crops into the cropping system and (2) female waterhemp plants may have higher survival rate than males under the same conditions, which was reflected by higher female: male ratios.

More investigation is needed to determine how soil seedbank dynamics contribute to population dynamics in different scenarios, such as how female-biasedness could be potentially helpful to replenish a seedbank, whether sexual unevenness in a generation causes sexual unevenness in freshly produced seeds, and how those biases contribute to long-term population changes and competitiveness against crops. In the near-total control situation as occurred in the 2019 soybean plots, as the number of fresh seeds added to the soil seedbank can be considered negligible, other factors, such as sex ratio, population stand density, and plant size are of less practical concern. A more practical investigation would be to see how different levels of control efficacy translate into medium- and long-term population changes, because no herbicide is totally invulnerable to the evolution of resistance in weed populations. It would also be useful to see how populations would change once resistance occurred and how various control methods might contribute to resistance management.

Funding

HN received financial support from the Robert A. Sloan Scholarship Endowment and the H.A. Wallace Chair for Sustainable Agriculture at Iowa State University.

Publisher's Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Statements

Data availability statement

The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding author/s. The data from this present study is available at doi: 10.25380/iastate.18190784.

Author contributions

ML conceptualized and designed the experiment. HN collected the data and wrote the original draft of the manuscript. ML and HN finalized the manuscript. Both authors contributed to the article and approved the submitted version.

Acknowledgments

The authors thank Matt Woods, Mike Fiscus, and the Iowa State University's Agronomy Research Farm crew for field management; Jessica Juarez-Morales, Elizabeth Oys, Ana Poznanski, Andrew Riehl, Angela Soto-Saenz, and Wyatt Westfall for field and laboratory assistance; Alan Gaul and Iowa State University's Seed Laboratory student assistants and interns for seed cleaning laboratory space, guidance, and technical assistance; Philip Dixon and Dean Adams for data analysis assistance; Russ Lenth and other Stackoverflow community members for answering HN coding questions; Lisa Schulte-Moore, Micheal Owen, and Mark Gleason for reviewing the manuscript; Overleaf staff for assistance in compiling the manuscript; and two reviewers and the subject editor for their valuable comments.

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Supplementary material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fagro.2022.811359/full#supplementary-material

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Summary

Keywords

waterhemp (Amaranthus tuberculatus (Moq.) J. D. Sauer), cropping system diversification, fecundity, integrated weed management, reproductive potential, Midwestern—United States, agroecolgy, sex ratio

Citation

Nguyen HTX and Liebman M (2022) Impact of Cropping System Diversification on Vegetative and Reproductive Characteristics of Waterhemp (Amaranthus tuberculatus). Front. Agron. 4:811359. doi: 10.3389/fagro.2022.811359

Received

08 November 2021

Accepted

07 February 2022

Published

03 March 2022

Volume

4 - 2022

Edited by

Rodrigo Werle, University of Wisconsin-Madison, United States

Reviewed by

John Wallace, The Pennsylvania State University (PSU), United States; Simerjeet Kaur, Punjab Agricultural University, India

Updates

Copyright

*Correspondence: Huong T. X. Nguyen

This article was submitted to Weed Management, a section of the journal Frontiers in Agronomy

Disclaimer

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

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