Circulating miRNA Expression Profiling in Primary Aldosteronism

Abstract

Objective: Primary aldosteronism is a major cause of secondary hypertension. Its two principal forms are bilateral adrenal hyperplasia (BAH) and aldosterone-producing adenoma (APA) whose differentiation is clinically pivotal. There is a major clinical need for a reliable and easily accessible diagnostic biomarker for case identification and subtyping. Circulating microRNAs were shown to be useful as minimally invasive diagnostic markers. Our aim was to determine and compare the circulating microRNA expression profiles of adenoma and hyperplasia plasma samples, and to evaluate their applicability as minimally invasive markers.

Methods: One hundred and twenty-three samples from primary aldosteronism patients were included. Next-generation sequencing was performed on 30 EDTA-anticoagulated plasma samples (discovery cohort). Significantly differently expressed miRNAs were validated by real-time reverse transcription-qPCR in an independent validation cohort (93 samples).

Results: We have found relative overexpression of miR-30e-5p, miR-30d-5p, miR-223-3p, and miR-7-5p in hyperplasia compared to adenoma by next-generation sequencing. Validation by qRT-PCR confirmed significant overexpression of hsa-miR-30e-5p, hsa-miR-30d-5p, and hsa-miR-7-5p in hyperplasia samples. Regarding the microRNA expressional variations, adenoma is more heterogeneous at the miRNA level compared to hyperplasia.

Conclusion: Three microRNAs were significantly overexpressed in hyperplasia samples compared to adenoma samples, but their sensitivity and specificity values are not good enough for introduction to clinical practice.

Introduction

Primary aldosteronism (PA) is a major cause of secondary hypertension affecting 5–13% of hypertensive patients (1–3). The two principal forms of PA are bilateral adrenal hyperplasia (BAH) and aldosterone-producing adenoma (APA) accounting for 60–70 and 30–40% of all PA cases, respectively (4). Somatic mutations of KCNJ5 (Potassium Voltage-Gated Channel Subfamily J Member 5) (Gly151Arg or Leu168ARg) gene are present in 34–43% of APAs (5–9). Mutations in ATP1A1 (ATPase Na⁺/K⁺ transporting Subunit Alpha 1; in 5.3–17%), ATP2B3 (ATPase Plasma Membrane Ca⁺⁺ Transporting 3; in 1.7–4%), CACNA1D (Calcium Voltage-Gated Channel Subunit Alpha 1D; in 9.3–21%), and CTNNB1 (Catenin Beta 1; in 2.1–5.1%) genes are responsible for a smaller portion of APAs (10–14). Nanba et al. found somatic mutations in aldosterone-driving genes in 88% of APAs by comprehensive NGS of CYP11B2 (aldosterone synthase)-expressing adrenal tumors (13). Moreover, tumors harboring CACNA1D mutation were found to be smaller than tumors with KCNJ5 mutations (14). In contrast, the pathogenesis of BAH is largely unknown that is mostly related to the lack of tissue samples for analysis since it is mostly left unoperated.

Due to the difference in treatment strategies (surgical resection for APA, mineralocorticoid antagonists for BAH), differentiation of APA and BAH is of pivotal clinical relevance. Adrenal venous sampling (AVS) is considered to be the gold standard for the differentiation of the two clinical entities, but it is invasive, requires great expertise and unfortunately unavailable in many centers (15–17). The recent SPARTACUS trial has challenged the superiority of AVS over imaging, but its findings are debated (18). The need for a reliable and easily accessible diagnostic biomarker enabling their differentiation is critical to assure the best clinical management for patients with primary hyperaldosteronism.

MicroRNAs (miRNA, miR) in their mature forms are short (19–25 nucleotide long), single-stranded, non-coding RNA molecules involved in the gene expression mostly at the post-transcriptional level. MiRNAs are expressed in a tissue-specific manner (19), and are also secreted in various body fluids; as such, miRNAs hold promise as potential diagnostic biomarkers, as a component of liquid biopsy (20, 21). Our aim has been to perform profiling of circulating plasma miRNAs in AVS-confirmed samples of patients with primary hyperaldosteronism in order to determine biomarkers for differentiation of APA vs. BAH.

The aim of our study was to determine and compare the circulating microRNA expression profiles of APA and hyperplasia plasma samples, and to evaluate their applicability as minimally invasive markers in replacing AVS in the diagnostics of PA.

Materials and Methods

Sample Collection and Ethics Approval

A total of 123 EDTA-anticoagulated plasma samples were used (Table 1). Altogether, 61 APA and 62 BAH samples were included in the study. Seventy-two male and Fifty-one female patients' samples were included. The average age has been 54.17 for women and 49.39 for men. The sex of patients was not considered as a factor in the statistical analysis of the data. Diagnosis of PA was established according to current guidelines (22). APA and BAH were differentiated by AVS with or without ACTH stimulation (Table 2). Lateralization index (LI) was used to differentiate between the two entities [(left side cortisol/left side aldosterone)/(right side cortisol/right side aldosterone)]. If LI was between 0.33 and 3, the sample was considered as BAH, while if it was more than 4 or <0.25, the sample was considered to be APA. Samples from APA patients were collected preoperatively. Genetic results of APA samples were available only for a minority of cases. Samples with lateralization index of 0.25–0.33 and 3–4 were considered to be in the zones of overlap, thus not included in the study (23). The study was approved by the Ethical Committee of the Hungarian Health Council. All experiments were performed according to relevant guidelines and protocols, and from all the involved patients written informed consent was obtained.

Sample Processing

Total RNA isolation was carried out from all plasma samples by miRNeasy Serum/Plasma Kit (Qiagen GmbH, Hilden, Germany). For assessing recovery efficacy, 5 μL of 5 nM Syn-cel-miR-39 miScript miRNA Mimic (Qiagen GmbH) was added before the addition of acid-phenol/chloroform as a spike-in control. Total RNA was held frozen at −80°C until further use.

miRNA Expression Profiling From Plasma Samples by Next-Generation Sequencing (NGS)

A total of 30 samples (16 APA and 14 BAH) were subjected to NGS. APA samples showing the highest (>4) or lowest (<0.25) LI and BAH samples with LI closest to 1 were selected for this cohort. Samples were involved from 3 centers (9, 13, 8 samples, respectively; 22 males and 8 females; average age BAH: 53.28 years, APA: 54.46 years). cDNA library was made from total RNA by the QIAseq miRNA Library Kit (Qiagen GmbH) according to the manufacturer's guideline. The library was prepared for sequencing in accordance with the instructions of the MiSeq Reagent Kit v3 (Illumina, San Diego, CA, USA). NGS was performed by Illumina MiSeq (Illumina). FASTQ files were used in the primary data analysis procedure, in which online analysis software of Qiagen was applied (https://geneglobe.qiagen.com/sg/analyze/). To strengthen our findings, another statistical method was also applied. Primary analysis included trimming of adapters using cutadapt (Marcel Martin, Technical University, Dortmund, Germany); reads with <16 bp insert sequences or with <10 bp Unique Molecular Index were discarded. Alignment of reads was performed using bowtie (John Hopkins University, Baltimore, MD, USA), and miRBase V21 was used for miRNAs. Secondary analysis revealed significantly differently expressed miRNAs after DESeq2 normalization (24). Disease groups were compared by unpaired Mann–Whitney test, and to decrease the false discover rate, corrected p-value was calculated by Benjamini–Hochberg method.

Validation of Individual miRNAs

miRNAs significantly differentially expressed by NGS were validated by RT-qPCR on an independent validation cohort of 93 samples in one center (Semmelweis University, 2nd Department of Internal Medicine). Reverse transcription of RNA was performed using the TaqMan MicroRNA Reverse Transcription Kit (Thermo Fisher Scientific) and individual TaqMan miRNA assays (CN: 4427975, 4440886; Thermo Fisher Scientific). Selected miRNAs were hsa-miR-30e-5p (ID: 002223), hsa-miR-223-3p (ID: 002295), hsa-miR-30d-5p (ID: 000420), and hsa-miR-7-5p (ID: 005723_mat). As reference miRNA, cel-miR-39 (ID: 000200) was used. Quantitative real-time PCR was performed by the TaqMan Fast Universal PCR Master Mix (2x) (CN: 4352042; Thermo Fisher Scientific) on a Quantstudio 7 Flex Real-Time PCR System (Thermo Fisher Scientific) in accordance with the manufacturer's protocol for TaqMan miRNA assays with minor modifications (the end volume of the reaction was 15 μl, program of thermal cycler was the following: after 20 s on 95°C, 40 cycles of 95°C for 3 s and 60°C for 30 s). Negative control reactions contained no cDNA templates. Samples were always run in triplicate. For data evaluation, the dCt method [delta Ct (cycle threshold) value equals target miRNA's Ct minus internal control miRNA's Ct] was used by Microsoft Excel 2016 (Microsoft, Redmond, WA, USA).

Statistical Analysis

Statistical power analysis was calculated with a statistical power and sample size calculator (HyLown Consulting LLC, Atlanta, GA, USA) (25). RT-qPCR data analysis was performed by GraphPad Prism 7.00 (GraphPad, La Jolla, CA, USA). Being a multicenter study, comparative statistics (Kruskal–Wallis test) were performed on samples from same disease groups, but from different centers in order to find possible skewed results. For differentiating between APA and BAH groups, t-test with Welch's correction or Mann–Whitney test based on the result of the Shapiro–Wilk normality test. To exclude skewed results, –dCt values were standardized using standard score (z-value, z-score: , where μ and σ is the mean and standard deviation of values of the given center, respectively. The F-test was used to evaluate differences between variances of circulating miRNA expressions of APA and BAH. Receiver operating characteristic (ROC) analysis was performed on miRNAs that could have potential utility as minimally invasive biomarkers. P < 0.05 were considered significant.

Results

miRNA Expression Profiling by NGS

We found 50 miRNAs to be significantly differentially expressed in samples of patients with APA vs. samples of patients with BAH by NGS and analyzed with the Qiagen online software. Multiple statistical analysis (including unpaired Mann–Whitney test) was performed on primary data that resulted in nine miRNAs showing the highest levels of significance (Table 3). From these, four miRNAs with the highest significance i.e., hsa-miR-30e-5p (p-value: 0.0005), hsa-miR-223-3p (p-value: 0.0039), hsa-miR-30d-5p (p-value: 0.0091), and hsa-miR-7-5p (p-value: 0.0134) were selected for validation on an independent cohort of samples. Statistical power analysis showed that by using this cohort of samples, the power of the sequencing was above 0.99. NGS data are available under the Gene Expression Omnibus (GEO) accession number GSE126386.

Real-Time qPCR Validation of Selected miRNAs

Four miRNAs, hsa-miR-7-5p, hsa-miR-30d-5p, hsa-mir-30e-5p, and hsa-miR-223-3p were subjected to validation by real-time RT-qPCR on 93 samples. Differences between miRNA expression within the investigated disease groups (APA and BAH) between different centers could be demonstrated (p < 0.0001), but the higher expression of miRNA in BAH relative to APA is evident for most cases (Figure 1). To exclude distorted results, standard scores of miRNA expression values of APA and BAH samples were compared (Figure 2). Validation of three out of four miRNAs established as significant by NGS were successful. Hsa-miR-30e-5p (p = 0.04) (Figure 2A), hsa-miR-30d-5p (p = 0.02) (Figure 2C), and hsa-miR-7-5p (p = 0.016) (Figure 2D) were significantly upregulated in BAH in comparison with APA samples. An upregulation tendency of hsa-miR-223-3p in BAH samples relative to APA samples was noticeable, but not significant (p = 0.15) (Figure 2B). As shown on Figure 1 regarding the relative differences between standard deviations, BAH samples appear to be homogenous at the level of miRNA expression, while miRNA expression in APA samples are more heterogeneous. To evaluate difference between variances of sample groups we applied F-test. P-values for hsa-miR-7-5p were: Zagreb: 0.35; Rochester: 0.055; Padova: n.d.; Turin: 0.03; Munich: 0.24, if p < 0.05, null-hypothesis is rejected, therefore standard deviations are surely not equal. Relative miRNA expression did not correlate with any of the measured parameters (tumor diameter, lateralization index, aldosterone ratio between two sides at AVS, basal peripheral aldosterone) and no sex difference was observed.

Figure 1

Figure 2

Diagnostic Performance of Circulating miRNAs

The diagnostic utility of the three significantly differentially expressed circulating microRNAs, hsa-miR-7-5p, hsa-miR-30e-5p, and hsa-miR-30d-5p was evaluated by ROC analysis (Figure 3). For hsa-miR-7-5p, the area under curve (AUC) was 0.64, and specificity and sensitivity values were 61.7 and 58.7%, respectively when choosing 0.13 as a cut-off point. ROC-analysis of hsa-miR-30e-5p showed an AUC of 0.61, and sensitivity of 58.7% and specificity of 61.7% when choosing 0.06 as a cut-off point. Hsa-miR-30d-5p performed similarly to hsa-miR-7-5p on ROC-analysis, AUC: 0.64, sensitivity: 58.7% and specificity: 61.7% when choosing a cut-off point of 0.05.

Figure 3

Discussion

Several genes have been described to be involved in the pathogenesis of APA, but the pathogenesis of BAH remains elusive. A recent study reported that aldosterone-producing cell clusters can be detected in BAH, and in these CACNA1D and KCNJ5 mutations were found (26). BAH could be associated with bilateral microscopic hyperplasia, bilateral nodular hyperplasia, bilateral adenomas, or bilateral adrenal aldosterone-producing cell clusters (27). Based on recent data, the various forms of PA can be regarded as representatives of a spectrum of diseases of variable severity (28, 29).

From a clinical perspective, differentiation of a unilateral APA from a bilateral hyperplasia is of pivotal importance, as their treatment is different (operation vs. medical therapy). AVS is the gold standard, but it is not widely available, it is invasive and requires great expertise. A minimally invasive marker for differentiating these two entities would be an invaluable help in the management of PA. We have therefore examined the expression of circulating miRNA in AVS-confirmed APA and BAH samples to evaluate the applicability of these novel epigenetic markers for their differentiation.

In our study, 50 miRNAs showed some degree of significantly different expression by NGS, and from the four miRNA selected for validation, three circulating miRNAs hsa-miR-30e-5p, hsa-miR-30-5p, and hsa-miR-7-5p were confirmed to be significantly up-regulated in BAH in comparison with APA (the fourth studied miRNA hsa-miR-223-3p showed only a non-significant tendency of up-regulation in BAH). In a previous study of miRNA expression in PA, where the authors compared tissue miRNA expression profiles of APA, unilateral adrenal hyperplasia (UAH) and normal adrenal cortex, hsa-miR-375 and hsa-miR-7 were significantly underexpressed in APA when compared to UAH and normal adrenal glands (30). Moreover, in a recent study, three of our selected circulating miRNAs hsa-miR-30e-5p, hsa-miR-30d-5p, and hsa-miR-223-3p were found to be down-regulated in essential hypertension patients compared to healthy people's plasma samples (31). These observations could raise the possibility that these miRNAs might be related to the regulation of blood pressure.

The range of expression of all four validated miRNAs seems to be broader in APA samples than in BAH samples (F-test was significantly different for data of two centers, and a tendency was seen in another). This finding might be related to the observations, that APA is genetically more heterogeneous than BAH (10, 11).

It is unclear why the expression levels (represented by dCt values) in the APA and BAH groups from different centers contributing to our study are different. The tendency of up-regulation of miRNA in BAH relative to APA can be seen for most miRNAs, however, the expression levels were rather different between some centers (Figure 1). Pre-analytical differences such as sample taking/storage might be suspected.

Despite showing significant overexpression in BAH samples, the diagnostic accuracy of the three validated circulating miRNAs (hsa-miR-30e-5p, hsa-miR-30-5p, and hsa-miR-7-5p) does not make them suitable for introduction to clinical practice. In contrast, adrenal venous sampling has impressive sensitivity and specificity values–when lateralization index cut-off point is 4–with 95.2 and 100%, respectively (23).

The pathogenic relevance of these miRNA in PA is unclear. Circulating hsa-miR-7-5p is found to be underexpressed in idiopathic inflammatory myopathy and esophageal squamous cell cancer patients compared to healthy controls (32, 33). Overexpressed hsa-miR-7-5p was found in acute pancreatitis, neuroendocrine tumors, and type 2 diabetes mellitus patients compared to healthy controls (34–36). There are reports stating that hsa-miR-7-5p functions as a tumor suppressor miRNA in pancreatic ductal adenocarcinoma (37) and in bladder cancer (38), and also inhibits melanoma cell proliferation (39). Circulating hsa-miR-30e-5p is up-regulated in systemic lupus erythematosus patients (40) and down-regulated in patients with mitral chord rupture (41) compared to healthy controls. Tissue hsa-miR-30d-5p is considered as a tumor suppressor miRNA in non-small cell lung cancer compared to healthy controls (42).

There are limitations of our study. Even if adrenal imaging was performed for all patients, due to the limited sensitivity of computed tomography and magnetic resonance imaging, bilateral adrenal microadenomas can be classified as bilateral hyperplasia. Actually, as the group of William E. Rainey has recently shown (26), BAH usually contains microadenomas, and thus the boundary between APA and BAH is not clear, and these PA forms can be regarded as representatives of the same spectrum of diseases. The clinical relevance, however, is still to be able to differentiate unilateral from bilateral forms. It would also be interesting to assess the circulating miRNA expression profiles related to different genetic forms of APA, but this would exceed the scope of our present study where the comparison of unilateral with bilateral forms of APA has been the primary aim for evaluating the potential applicability of circulating miRNA as markers of lateralization. Heterogeneity among contributing centers is another limitation, as discussed above.

To summarize, we have found that three circulating microRNAs were significantly overexpressed in BAH compared to APA patients, but don't have high enough sensitivity and specificity values to be introduced to clinical medicine. BAH seems to be more homogeneous in miRNA expression than APA. These findings also seem to support the idea that APA and BAH represent entities forming part of a spectrum of diseases leading to primary aldosteronism.

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