Original Research ARTICLE
Pan-cancer analysis reveals disrupted circadian clock associates with T cell exhaustion
- 1School of Medicine, Nantong University, China
Although dysfunctional circadian clock emerged to be the hallmark of cancer, there remain fundamental gaps in our understanding of the underlying mechanisms. Here, we systematically analyzed the core genes of circadian clock (CLOCK, ARNTL, ARNTL2, NPAS2, NR1D1, NR1D2, CRY1, CRY2, RORA, RORB, RORC, PER1, PER2, and PER3) across a broad range of cancers. To our surprise, core negative regulators (PER1, PER2, PER3, CRY1 and CRY2) are consistently downregulated while core positive regulators show minimal alterations, indicating disrupted circadian clock in cancers. Such downregulation originates from copy number variations where heterozygous deletion predominates. The disrupted circadian clock is significantly associated with patients’ outcome. Further pathway enrichment analysis suggests that circadian clock widely impacts 45 pathways such as Ras signaling pathway and T cell receptor signaling pathway. By using state-of-the-art immune cell deconvolution and pathway quantification, we demonstrate that abnormal circadian clock contributes to T cell exhaustion and global upregulation of immune inhibitory molecules such as PD-L1 and CTLA-4. In summary, the rhythm of circadian clock in cancers is disrupted. Abnormal circadian clock linked with immune evasion may serve as a potential hallmark of cancer.
Keywords: Circadian clock, clock, bmal1, PD-L1, Immune Evasion
Received: 24 Aug 2019;
Accepted: 01 Oct 2019.
Copyright: © 2019 Wu, Tao, Zhang, Fan and Mao. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
Mx. Yihui Fan, School of Medicine, Nantong University, Nantong, China, email@example.com
Mx. Renfang Mao, School of Medicine, Nantong University, Nantong, China, firstname.lastname@example.org