Spotted Fever Group Rickettsia Infecting Ticks (Acari: Ixodidae), Yak (Bos grunniens), and Tibetan Sheep (Ovis aries) in the Qinghai–Tibetan Plateau Area, China

Introduction

Rickettsia spp. (Rickettsiales: Rickettsiaceae) are obligate intracellular bacteria that causes rickettsioses, which is one of the oldest known vector-borne zoonoses diseases (1). The genus Rickettsia consists of four members: spotted fever group (SFG) rickettsiae, typhus group rickettsiae, the Rickettsia bellii group, and the Rickettsia canadensis group (2). At present, 26 SFG Rickettsia species had been reported, 16 of which were associated with human diseases (3, 4). In addition to the typical triad of fever, rash, and headache, the classic symptoms of new cases of Rickettsia varied by type, and in some cases, the typical symptoms might not appear or be ignored (4). Therefore, the clinical diagnosis of rickettsioses is a huge challenge for both physicians and veterinarians (3, 4).

SFG Rickettsia includes more than 20 different species, including pathogenic species that cause human and animal incidence, and nonpathogenic species (5). In Asia, a variety of SFG Rickettsia have been reported, and these rickettsiae are mostly distributed in border areas of various countries. In the Russian Far East, Kazakhstan, northern China, and Mongolia, R. sibirica and R. raoultii are widely distributed (4). In China, 11 SFG Rickettsia species have been detected in tick vectors and animals, some of which have been characterized as human pathogens (6). In previous reports, SFG Rickettsia was detected in a variety of ticks, including Haemaphysalis qinghaiensis in Yunnan Province and Harbin Province in China (5, 7, 8). However, there are few reports of the determination of SFG Rickettsia in H. qinghaiensis in the Qinghai–Tibetan Plateau Area (QTPA) (7, 9).

The QTPA is well known for the largest and highest plateau in the world, which is located in northwestern China and with a unique natural ecosystem (7). Yaks and Tibetan sheep are indigenous animals on the QTPA, which are the important sources of milk, meat, fur, skins, and dung in the area, contributing to the local economic development and the lives of herdsmen (10). Although SFG rickettsioses in livestock have been reported in this area, the information on these pathogens are limited (6, 11). H. qinghaiensis is a common and endemic three-host tick on the QTPA, which is easy to parasitize on Tibetan sheep, yaks, sheep, goats, and other domestic animals to transmit a variety of diseases (9). Therefore, the existence of H. qinghaiensis is a potential threat to the animal husbandry in the QTPA (12).

This study aimed to determine the existence and molecular characteristics of SFG Rickettsia from yaks, Tibetan sheep, and tick vectors in the QTPA, so as to further understand the prevalence of SFG Rickettsia and clarify the interaction between ticks and animals.

Materials and Methods

Sample Collection and DNA Extraction

In the present study, all of 1,000 samples including yak and Tibetan sheep blood samples, and tick samples were collected from nine cites of Yushu Tibetan Autonomous Prefecture (Yushu) and Guoluo Tibetan Autonomous Prefecture (Guoluo) in Qinghai Province of QTPA (Figure 1). The 734 blood samples of yaks and Tibetan sheep were collected in tubes containing an EDTA anticoagulant, and genomic DNA was extracted using the MagPure Blood DNA KF Kit (Magen, China) according to the manual of the manufacturer. The 266 tick samples were collected, some of which were engorged ticks collected on the surface of yaks and Tibetan sheep, and the rest of ticks were collected by dragging the grasslands with a flannel cloth. DNA was extracted by using the MagPure Mollusc DNA KF Kit (Magen, China) and stored at −80°C until further use.

FIGURE 1

Figure 1. Map of the Qinghai–Tibetan Plateau Area and Qinghai Province showing the sampling sites. The green hollow circle indicates the location of the sample collection in this study.

Identification of Ticks and Detection of Pathogens

Ticks were identified by the mitochondrial 16S rRNA gene (forward primer 5′-CTG CTC AAT GAT TTT TTA AAT TGC TGT GG-3′, reverse primer 5′-CCG GTC TGA ACT CAG ATC AAG T-3′) and morphological characteristics (13, 14). Outer membrane protein A (ompA) gene and surface cell antigen 4 (sca4) gene were used to investigate the molecular characterization of the SFG Rickettsia by using genus-specific primers (forward primer 5′-GCT TTA TTC ACC ACC TCA AC-3′ and reverse primer 5′-TRA TCA CCA CCG TAA GTA AAT-3′; D767f: 5′-CGA TGG TAG CAT TAA AAG CT-3′ and D1390r: 5′-CTT GCT TTT CAG CAA TAT CAC-3′) (15, 16). PCR reaction volume of 10 μl containing 3 μl of DNA template, 0.5 μl each of forward and reverse primer (100 μM), 0.1 μl of Taq polymerase (0.5 U; New England BioLab, USA), 0.2 μl of deoxyribonucleotide triphosphate (200 μM; New England BioLab, USA), 1 μl of 10× ThermoPol Reaction Buffer (New England BioLab, USA), and double-distilled water to a volume of 10 μl. Positive yak DNA samples of Rickettsia spp. ompA gene from our previous study were used as positive controls, and double-distilled water was used as a negative control (11).

Sequencing and Phylogenetic Analyses

All PCR positive tick and pathogen samples were purified using EasyPure® Quick Gel Extraction Kit (TransGen, China) and cloned into E. coli DH5α using the PMD^TM 19-T Vector Cloning Kit (TaKaRa, Japan). At least two positive clones from each positive sample were selected for sequencing in Sangon Biotech (Shanghai) Co., Ltd. Nucleotide sequence identities were determined by performing GenBank BLASTn analysis (https://blast.ncbi.nlm.nih.gov/Blast.cgi). Phylogenetic trees based on the obtained sequences were constructed using the neighbor-joining method, and genetic distance matrix among various Rickettsia clades in a phylogenetic tree were calculated using the maximum composite likelihood model in MEGA7.0 (17).

Statistical Analysis

The Chi-square test was used to evaluate the difference in prevalence between different parameters. Exposure variables included prefecture (Guoluo and Yushu), altitude (3,000–4,000 and 4,000–5,000 m), and animals (yak and Tibetan sheep). When the p-values were lower than 0.05, the result was considered to be of statistically significant difference (https://www.mathsisfun.com/data/chi-square-calculator.html).

Results

Identification of Ticks

By morphological examination, all the tick samples were identified as Haemaphysalis (Figure 2) (14); then the mitochondrial 16S rRNA gene target was used as an identification molecular marker, and 30 tick specimens were randomly selected for sequencing. By BLASTn analysis and phylogenetic analysis, the evidence demonstrated that there is an extensive homology between the Haemaphysalis species 16S rRNA gene sequence and the published sequence of H. qinghaiensis (MF629844) from Gansu Province, China, and grouped with the H. qinghaiensis clades (Figure 3 and Table 1).

FIGURE 2

Figure 2. The dorsal view and ventral view of Haemaphysalis qinghaiensis.

FIGURE 3

Figure 3. Phylogenetic tree based on the mitochondrial 16S rRNA gene (460 bp) of Haemaphysalis spp. obtained in this study. Bootstraps analysis was performed with 500 replicates. The solid square indicates sequence from this study. One sequence from this study is bolded. Ixodes persulcatus (JF934742) was used as outgroup.

TABLE 1

Table 1. DNA sequences of spotted fever group (SFG) Rickettsia obtained in this study.

Infection Rates of Spotted Fever Group Rickettsia

In the current study, the overall infection rate of SFG Rickettsia was 17% (170/1,000), including the infection rate of 51.35% (76/148) in animal-derived engorged ticks, 57.6% (68/118) in free ticks, 5.9% (25/425) in yaks, and 0.3% (1/309) in Tibetan sheep (Table 2).

TABLE 2

Table 2. The positive samples of spotted fever group (SFG) Rickettsia in ticks and animals in this study.

Statistical analysis showed that for yaks, the infection rate of SFG Rickettsia in Guoluo was significantly higher than that of Yushu (p = 0.0002), and the infection rate at altitudes of 3,000–4,000 m was significantly higher than that at altitudes of 4,000–5,000 m (p = 0.0005) (Table 3). Moreover, altitude also was a significant impact factor on the total infection rate, such as the infection rate of SFG Rickettsia at an altitude of 3,000–4,000 m was remarkably higher than that of 4,000–5,000 m (p = 0.0183) (Table 3). However, there was no significant difference in the infection rate of SFG Rickettsia from engorged H. qinghaiensis divided from yaks and Tibetan sheep, and also no significant difference in the infection rate of SFG Rickettsia of free H. qinghaiensis and engorged those in this study (p > 0.05) (Table 4).

TABLE 3

Table 3. The patterns of infection rates of spotted fever group (SFG) Rickettsia in ticks, yaks, and Tibetan sheep grouped by prefecture and altitude of the sampling sites.

TABLE 4

Table 4. The infection rate of spotted fever group (SFG) Rickettsia in engorged ticks.

Sequencing and Phylogenetic Analysis of Spotted Fever Group Rickettsia ompA Gene

In this study, a total of 19 SFG Rickettsia ompA gene sequences (MZ130267–MZ130285) were obtained, and the identity between each sequence was 94.2−100%, and the identity was 99.04–100% between MK307883, MN394797, MN394798, MN394801, and MN394800. The identity was 95.7–98.6% between the sequences of ticks and those of animals. Phylogenetic analysis of SFG Rickettsia ompA gene revealed that 19 sequences were in the same clade as R. raoultii isolated from horse, camel, Haemaphysalis erinacei, Ixodes persulclcatus, and three Dermacentor species from China, Austria, and Turkey (Figure 4). Genetic distance among various Rickettsia clades was 1–21% and R. raoultii with 8–13% genetic distance with other rickettsiae (Table 5).

FIGURE 4

Figure 4. Phylogenetic tree based on ompA particle sequences (209/212 bp) of spotted fever group (SFG) Rickettisa obtained in this study. Bootstraps analysis was performed with 500 replicates. The solid circle indicates sequences from Tibetan sheep, the empty circle indicates sequences from yaks, and the solid triangle indicate sequences from Haemaphysalis qinghaiensis. All sequences from this study are bolded.

TABLE 5

Table 5. Genetic distance matrix among various Rickettsia species in a phylogenetic tree based on the ompA gene in this study.

Sequencing and Phylogenetic Analysis of Spotted Fever Group Rickettsia sca4 Gene

All of five SFG Rickettsia sca4 gene sequences (OL621221–OL621225) were obtained, and the identity between each sequences was 98.6−99.8%, and the identity was 97.60−98.72% in KP768191. Phylogenetic analysis of SFG Rickettsia sca4 gene revealed that five sequences were in the same clade as R. raoultii isolated from Dermacentor reticulatus from Ukraine (Figure 5). Genetic distance among various Rickettsia clades was 1−42%, R. raoultii with 2−25% genetic distance with other rickettsiae (Table 6).

FIGURE 5

Figure 5. Phylogenetic tree based on sca4 particle sequences (624 bp) of spotted fever group (SFG) Rickettsia obtained in this study. Bootstraps analysis was performed with 500 replicates. The solid triangle indicates sequences from Haemaphysalis qinghaiensis. All sequences from this study are bolded.

TABLE 6

Table 6. Genetic distance matrix among various Rickettsia species in a phylogenetic tree based on sca4 gene in this study.

Discussion

Haemaphysalis qinghaiensis was first discovered in Huangyuan County, Qinghai Province in 1980, and was subsequently discovered in Gansu, Sichuan, Ningxia, Yunnan, Tibet provinces of China (14, 18). There was no record abroad. In nature, a complete life history of H. qinghaiensis is generally 3 years (14). It was the dominant tick species in Qinghai Province of the QTPA, China, and it is mainly parasitic on various domestic animals, and as the vector of Theileria sp. and Babesia sp. (12, 14). Therefore, H. qinghaiensis and its transmitted diseases were the main economic burden of animal husbandry in Qinghai Province in the QTPA (12).

In the past 30 years, the scope and importance of pathogenic rickettsiae associated with ticks had increased dramatically (19). Most of the pathogenic Rickettsia species discovered had been found in ticks, and ticks were considered to be the most important vector and reservoir host of Rickettsia in almost every region of the word (4, 20, 21). Later, they were discovered to be related to disease symptoms in humans, such as headache, arthralgias, multiple eschars, and meningoencephalitis (22, 23). Although ticks were parasitic on humans appearing to be opportunistic, the risk of Rickettsia infection was greatly increased among herders and livestock living on the Tibetan Plateau, where ticks are widely distributed.

R. raoultii is a bacterium that was first isolated in 1999 from D. nuttalli and Rhipicephalus pumilio and was described as a novel species in 2008 (24, 25). In China, the first reported case of R. raoultii in 2012 was from D. silvarum in Xinjiang Province (26). In a previous report of Wen et al., R. raoultii was detected in at least 13 species of ticks belonging to six genera, including Dermacentor, Ixodes, Rhipicephalus, Haemaphysalis, Amblyomma, and Hyalomma (27). Moreover, R. raoultii also was detected in animals, such as yaks, Bactrian camel (Camelus bactrianus), and red fox (Vulpes vulpes) (11, 28). Importantly, R. raoultii was considered to be a human pathogen that had been shown to cause Tick-borne lymphadenopathy (TIBOLA) and Dermacentor-borne necrosis erythema and lymphadenopathy (DEBONEL) (29), and it should be emphasized that the cases had also been reported in China (30, 31).

ompA is considered to be a good candidate gene for phylogenetic analysis of most SFG representatives, with a higher degree of interspecies variation than 16S rRNA and citrate synthase-encoding gene (gltA), and ompA is present in almost all SFG members (32). sca4 also has been used to rapidly and reliably differentiate members of the genus Rickettsia (16). Thus, ompA and sca4 gene fragments were used to specifically detect rickettsial infection in ticks in many studies, such as Ishikura et al. (33), Orkun et al. (34), Taylor et al. (35), Jiang et al. (36), Kooshki et al. (37) and Nadim et al. (38). Therefore, in the current study, ompA and sca4 were selected as the target genes to detect SFG Rickettsia in yak, Tibetan sheep blood samples, and tick samples. This study results showed that SFG Rickettsia infection was detected in both tick and animal blood samples. By sequencing and BLASTn analysis, the evidence demonstrated that there were 99.04–100% sequence identities between obtained SFG Rickettsia ompA sequences (MZ130267–MZ130285) and R. raoultii (MK307883, MN394797, MN394798, MN394801, and MN394800) isolated from China. Meanwhile, BLASTn analysis of sca4 sequences showed 97.60–98.72% similarity with R. raoultii (KP768191) isolated from D. reticulatus from Ukraine. Furthermore, phylogenetic analysis showed that the current study obtained DNA sequences that formed an independent clade with R. raoultii from China, Austria, Turkey, Ukraine, and Russia, with a high bootstrap value. The genetic distance matrix based on Rickettsia ompA and sca4 genes showed that the genetic distances between R. raoultii and other rickettsiae were 8–13% and 2–25%, respectively (Tables 5, 6). In previous studies, this pathogen was also reported in various provinces such as Jilin (39), Heilongjiang (30), Gansu (40), Shaanxi (40), Xinjiang (26), and Yunnan (5), which suggests that the geographic distribution of R. raoultii covered most of China.

Molecular biology detection revealed that bacteria of genus Rickettsia were distributed all over the world, which was related to the geographical distribution of their vectors (4). Ticks, as the most important vectors of rickettsiae, were distributed throughout the world; the risk of rickettsioses in a given region might depend on the presence and biotopes of specific species of ticks (41). Among Asian countries, R. sibirica was endemic in most of the areas of Russia, China, Mongolia, and Kazakhstan, and was mainly transmitted by the Dermacentor tick (3). In addition, it was reported in Russia and China that R. heilongjiangensis isolated from H. concina and D. silvarum, and the cases caused by this Rickettsia species, had also been reported in Japan (1, 42). R. japonica was also found in Japan and was transmitted by a variety of Haemaphysalis ticks, other Ixodes and Dermacentor ticks (1). Rickettsia strains closely related to R. japonica were detected in ticks in South Korea and northern Thailand (43, 44). In Turkey, researchers detected different SFG Rickettsia in different ticks; R. aeschlimanii was detected in H. marginatum, R. raoultii and R. slovaca were detected in D. marginatus, and R. hoogstraalii in H. parva (45). In India, R. conorii subsp. indica was widespread, and the cases were also reported in Laos and Sri Lanka (1). Ticks are the most important external parasites of livestock and wildlife in Iran. A total of 46 species had been reported (46), in which Argas persicus was the important ectoparasite of poultry in Iran. In previous studies, R. Hoogstraalii (37) and SFG Rickettsia (47) had been detected in Argas persicus. In addition, the epidemiological investigation on SFG Rickettsia of D. marginatus Sulzer, H. sulcata, H. inermis, and Hyalomma asiaticum in Iran was reported (38, 47).

In the current study, the infection rates of SFG Rickettsia in free H. qinghaiensis, engorged H. qinghaiensis, yaks, and Tibetan sheep were 57.6%, 51.35%, 5.9%, and 0.3%, respectively. Studies had reported the detection of R. raoultii in yaks, camels, and several ticks in Qinghai Province (7, 11). Combined with the experimental results of this study, it was suggested that H. qinghaiensis might be the host of this pathogen, but because the infection rate of this pathogen between animals and ticks was remarkably different, therefore, whether the pathogen could be transmitted by H. qinghaiensis needed further study. Meanwhile, a phylogenetic tree showed that the ompA sequences of SFG Rickettsia isolated from H. qinghaiensis in Qinghai belonged to the same clade as the reported one, while the ompA gene sequences of SFG Rickettsia isolated from animals (except MZ130271) were in same clade as those of other tick species (including Dermacentor and Ixodes). In addition, Han et al. also detected this pathogen in several Dermacentor ticks in Qinghai Province (7). According to a previous report (48) that R. raoultii was closely associated with Dermacentor spp., we suspected that this pathogen isolated from animals in this study was not mainly transmitted by H. qinghaiensis. The high infection rate of this pathogen in H. qinghaiensis suggested that H. qinghaiensis might be the reservoir of R. raoultii.

In the current study, the survey results showed that the infection rate of SFG Rickettsia in yaks was affected by region and altitude (p = 0.0002 and p = 0.0005), and the total infection rates were affected by altitude (p = 0.018). However, the current infection rates of SFG Rickettsia showed no significant difference between yaks and Tibetan sheep, which implied that the infection of SFG Rickettsia might not be related to the host species in detected areas. So further research was needed to confirm this suspicion.

In conclusion, this study revealed the existence of SFG Rickettsia in tick vectors, yaks, and Tibetan sheep in QTPA, China. The phylogenetic analysis showed that all sequences obtained in the current study were closely related to the R. raoultii isolated from different tick species and domestic animals. Although the case of human infection by R. raoultii was not reported in the sampling regions, high infection rates should be paid more attention. Importantly, the relationship between SFG Rickettsia, tick species, and animal hosts should be further explored to understand their interrelationships.

Data Availability Statement

The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/supplementary material.

Ethics Statement

The study was conducted in compliance with the ethical policies of the journal and the rules of the Ethics Committee of Qinghai University.

Author Contributions

YL, Y-CH, J-XL, Y-LS, H-XH, J-SC, Y-HG, YW, PM, Y-PW, R-SL, W-KC, Z-HC, and JL designed the experiments and sampling. Y-CH, PM, Y-PW, R-SL, W-KC, and Z-HC performed the experiments. Y-CH and J-XL analyzed the data. Y-CH wrote the original manuscript. T-SQ, J-FY, Q-XZ, J-YC, Q-BZ, G-WH, MK, and YL reviewed the manuscript. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the Regular Assistance Project of International Department of the Ministry of Science and Technology of China (Grant No. KY201904013), the Special Project for Scientific and Technological International Cooperation of the Science and Technology Department, Qinghai Province (2021-HZ-801), and the Veterinary Bureau Scientific Research Foundation of Qinghai Province (NMSY-2021-05).

Conflict of Interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher's Note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

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