Frontiers in Bioinformatics

Original Research

Published on 15 Jan 2024

A breast cancer-specific combinational QSAR model development using machine learning and deep learning approaches

in Network Bioinformatics

Anush Karampuri
Shyam Perugu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1328262

3,511 views
6 citations

Technology and Code

Published on 10 Jan 2024

BPAGS: a web application for bacteriocin prediction via feature evaluation using alternating decision tree, genetic algorithm, and linear support vector classifier

in Drug Discovery in Bioinformatics

Suraiya Akhter
John H. Miller

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1284705

3,650 views
6 citations

Perspective

Published on 08 Jan 2024

No-boundary thinking for artificial intelligence in bioinformatics and education

in Integrative Bioinformatics

Prajay Patel
Nisha Pillai
Inimary Toby

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1332902

2,362 views
2 citations

Original Research

Published on 05 Jan 2024

Protein-lipid interactions and protein anchoring modulate the modes of association of the globular domain of the Prion protein and Doppel protein to model membrane patches

in Protein Bioinformatics

Patricia Soto
Davis T. Thalhuber
Frank Luceri
Jamie Janos
Mason R. Borgman
Noah M. Greenwood
Sofia Acosta
Hunter Stoffel

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1321287

1,984 views

Editorial

Published on 05 Jan 2024

Editorial: Expert opinions in protein bioinformatics: 2022

in Protein Bioinformatics

Daisuke Kihara

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1338560

1,017 views

Hypothesis and Theory

Published on 05 Jan 2024

RxNorm for drug name normalization: a case study of prescription opioids in the FDA adverse events reporting system

in Integrative Bioinformatics

Huyen Le
Ru Chen
Stephen Harris
Hong Fang
Beverly Lyn-Cook
Huixiao Hong
Weigong Ge
Paul Rogers
Weida Tong
Wen Zou

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1328613

2,635 views
3 citations

Original Research

Published on 04 Jan 2024

Genomic risk prediction of cardiovascular diseases among type 2 diabetes patients in the UK Biobank

in Genomic Analysis

Yixuan Ye
Jiaqi Hu
Fuyuan Pang
Can Cui
Hongyu Zhao

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1320748

2,426 views
1 citation

Methods

Published on 03 Jan 2024

Identifying epigenetic aging moderators using the epigenetic pacemaker

in Genomic Analysis

Colin Farrell
Chanyue Hu
Kalsuda Lapborisuth
Kyle Pu
Sagi Snir
Matteo Pellegrini

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1308680

1,519 views
1 citation

Original Research

Published on 22 Dec 2023

Improving fluorescence lifetime imaging microscopy phasor accuracy using convolutional neural networks

in Computational BioImaging

Varun Mannam
Jacob P. Brandt
Cody J. Smith
Xiaotong Yuan
Scott Howard

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1335413

2,722 views
5 citations

Original Research

Published on 18 Dec 2023

Attention network for predicting T-cell receptor–peptide binding can associate attention with interpretable protein structural properties

in Protein Bioinformatics

Kyohei Koyama
Kosuke Hashimoto
Chioko Nagao
Kenji Mizuguchi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1274599

2,972 views
8 citations

Original Research

Published on 15 Dec 2023

Efficient semi-supervised semantic segmentation of electron microscopy cancer images with sparse annotations

in Computational BioImaging

Lucas Pagano
Guillaume Thibault
Walid Bousselham
Jessica L. Riesterer
Xubo Song
Joe W. Gray

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1308707

1,626 views

Brief Research Report

Published on 15 Dec 2023

Completing a molecular timetree of apes and monkeys

in Evolutionary Bioinformatics

Jack M. Craig
Grace L. Bamba
Jose Barba-Montoya
S. Blair Hedges
Sudhir Kumar

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1284744

2,231 views
2 citations

Original Research

Published on 15 Dec 2023

Segmentation of cellular ultrastructures on sparsely labeled 3D electron microscopy images using deep learning

in Computational BioImaging

Archana Machireddy
Guillaume Thibault
Kevin G. Loftis
Kevin Stoltz
Cecilia E. Bueno
Hannah R. Smith
Jessica L. Riesterer
Joe W. Gray
Xubo Song

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1308708

2,327 views
6 citations

Methods

Published on 13 Dec 2023

Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-)orthologs

in Protein Bioinformatics

Paul Klemm
Peter F. Stadler
Marcus Lechner

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1322477

2,106 views
14 citations

Original Research

Published on 11 Dec 2023

Reconstructing diploid 3D chromatin structures from single cell Hi-C data with a polymer-based approach

in Genomic Analysis

Jan Rothörl
Maarten A. Brems
Tim J. Stevens
Peter Virnau

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1284484

1,544 views
1 citation

Original Research

Published on 07 Dec 2023

Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA

in Genomic Analysis

Annette Lien
Leonardo Pestana Legori
Louis Kraft
Peter Wad Sackett
Gabriel Renaud

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1260486

4,701 views
6 citations