Frontiers in Bioinformatics | Integrative Bioinformatics

Original Research

Published on 03 Apr 2024

bootGSEA: a bootstrap and rank aggregation pipeline for multi-study and multi-omics enrichment analyses

in Integrative Bioinformatics

Shamini Hemandhar Kumar
Ines Tapken
Daniela Kuhn
Peter Claus
Klaus Jung

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1380928

2,017 views
3 citations

Brief Research Report

Published on 27 Mar 2024

A systematic evaluation of state-of-the-art deconvolution methods in spatial transcriptomics: insights from cardiovascular disease and chronic kidney disease

in Integrative Bioinformatics

Alban Obel Slabowska
Charles Pyke
Henning Hvid
Leon Eyrich Jessen
Simon Baumgart
Vivek Das

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1352594

4,097 views
3 citations

Original Research

Published on 15 Mar 2024

An interactive visualization tool for educational outreach in protein contact map overlap analysis

in Integrative Bioinformatics

Kevan Baker
Nathaniel Hughes
Sutanu Bhattacharya

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1358550

2,495 views
1 citation

Original Research

Published on 06 Feb 2024

MRSLpred—a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale

in Integrative Bioinformatics

Shubham Choudhury
Nisha Bajiya
Sumeet Patiyal
Gajendra P. S. Raghava

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1341479

1,540 views
4 citations

Perspective

Published on 08 Jan 2024

No-boundary thinking for artificial intelligence in bioinformatics and education

in Integrative Bioinformatics

Prajay Patel
Nisha Pillai
Inimary Toby

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1332902

2,362 views
2 citations

Hypothesis and Theory

Published on 05 Jan 2024

RxNorm for drug name normalization: a case study of prescription opioids in the FDA adverse events reporting system

in Integrative Bioinformatics

Huyen Le
Ru Chen
Stephen Harris
Hong Fang
Beverly Lyn-Cook
Huixiao Hong
Weigong Ge
Paul Rogers
Weida Tong
Wen Zou

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1328613

2,635 views
3 citations

Original Research

Published on 14 Nov 2023

Development of an antimicrobial resistance plasmid transfer gene database for enteric bacteria

in Integrative Bioinformatics

Suad Algarni
Steven L. Foley
Hailin Tang
Shaohua Zhao
Dereje D. Gudeta
Bijay K. Khajanchi
Steven C. Ricke
Jing Han

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1279359

2,148 views
5 citations

Original Research

Published on 11 Oct 2023

VariantSurvival: a tool to identify genotype–treatment response

in Integrative Bioinformatics

Thomas Krannich
Marina Herrera Sarrias
Hiba Ben Aribi
Moustafa Shokrof
Alfredo Iacoangeli
Ammar Al-Chalabi
Fritz J. Sedlazeck
Ben Busby
Ahmad Al Khleifat

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1277923

1,880 views

Editorial

Published on 21 Aug 2023

Editorial: Insights in integrative bioinformatics–2021

in Integrative Bioinformatics

Zhi-Ping Liu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1267370

1,038 views

Review

Published on 04 Aug 2023

Omics data integration in computational biology viewed through the prism of machine learning paradigms

in Integrative Bioinformatics

Aziz Fouché
Andrei Zinovyev

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1191961

4,800 views
3 citations

Editorial

Published on 04 Aug 2023

Editorial: Transparent machine learning in bio-medicine

in Integrative Bioinformatics

Juan G. Diaz Ochoa
André Marquardt

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1264803

1,526 views
1 citation

Original Research

Published on 27 Jul 2023

3′ RNA-seq is superior to standard RNA-seq in cases of sparse data but inferior at identifying toxicity pathways in a model organism

in Integrative Bioinformatics

Ryan S. McClure
Yvonne Rericha
Katrina M. Waters
Robyn L. Tanguay

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1234218

2,753 views
2 citations

Original Research

Published on 27 Jul 2023

Optimal ranking and directional signature classification using the integral strategy of multi-objective optimization-based association rule mining of multi-omics data

in Integrative Bioinformatics

Saurav Mallik
Soumita Seth
Amalendu Si
Tapas Bhadra
Zhongming Zhao

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1182176

1,732 views
1 citation

Original Research

Published on 05 Jul 2023

Translating theory into practice: assessing the privacy implications of concept-based explanations for biomedical AI

in Integrative Bioinformatics

Adriano Lucieri
Andreas Dengel
Sheraz Ahmed

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1194993

2,419 views
5 citations

Editorial

Published on 04 Jul 2023

Editorial: Bioinformatics in the age of data science: algorithms, methods, and tools applied from Omics to structural data

in Integrative Bioinformatics

Diego Mariano
Neli José Da Fonseca Júnior
Lucianna Helene Santos
Raquel Cardoso de Melo-Minardi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1246859

1,328 views

Original Research

Published on 20 Jun 2023

Structure-based neural network protein–carbohydrate interaction predictions at the residue level

in Integrative Bioinformatics

Samuel W. Canner
Sudhanshu Shanker
Jeffrey J. Gray

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1186531

6,140 views
16 citations