Frontiers in Bioinformatics | Integrative Bioinformatics

Original Research

Published on 26 Jul 2024

Predictive identification and design of potent inhibitors targeting resistance-inducing candidate genes from E. coli whole-genome sequences

in Integrative Bioinformatics

Abdullahi Tunde Aborode
Neeraj Kumar
Christopher Busayo Olowosoke
Tope Abraham Ibisanmi
Islamiyyah Ayoade
Haruna Isiyaku Umar
Abdullahi Temitope Jamiu
Basit Bolarinwa
Zainab Olapade
Abidemi Ruth Idowu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1411935

3,157 views
3 citations

Original Research

Published on 15 Jul 2024

CAEM-GBDT: a cancer subtype identifying method using multi-omics data and convolutional autoencoder network

in Integrative Bioinformatics

Jiquan Shen
Xuanhui Guo
Hanwen Bai
Junwei Luo

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1403826

1,449 views
1 citation

Original Research

Published on 19 Jun 2024

A comprehensive multi-omics analysis reveals unique signatures to predict Alzheimer’s disease

in Integrative Bioinformatics

Michael Vacher
Rodrigo Canovas
Simon M. Laws
James D. Doecke

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1390607

3,526 views
9 citations

Original Research

Published on 14 May 2024

Pathway-based analyses of gene expression profiles at low doses of ionizing radiation

in Integrative Bioinformatics

Xihaier Luo
Seyednami Niyakan
Patrick Johnstone
Sean McCorkle
Gilchan Park
Vanessa López-Marrero
Shinjae Yoo
Edward R. Dougherty
Xiaoning Qian
Francis J. Alexander

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1280971

1,676 views
2 citations

Original Research

Published on 16 Apr 2024

PAGER-scFGA: unveiling cell functions and molecular mechanisms in cell trajectories through single-cell functional genomics analysis

in Integrative Bioinformatics

Fengyuan Huang
Robert S. Welner
Jake Y. Chen
Zongliang Yue

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1336135

2,402 views
1 citation

Original Research

Published on 03 Apr 2024

bootGSEA: a bootstrap and rank aggregation pipeline for multi-study and multi-omics enrichment analyses

in Integrative Bioinformatics

Shamini Hemandhar Kumar
Ines Tapken
Daniela Kuhn
Peter Claus
Klaus Jung

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1380928

2,243 views
3 citations

Brief Research Report

Published on 27 Mar 2024

A systematic evaluation of state-of-the-art deconvolution methods in spatial transcriptomics: insights from cardiovascular disease and chronic kidney disease

in Integrative Bioinformatics

Alban Obel Slabowska
Charles Pyke
Henning Hvid
Leon Eyrich Jessen
Simon Baumgart
Vivek Das

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1352594

4,534 views
4 citations

Original Research

Published on 15 Mar 2024

An interactive visualization tool for educational outreach in protein contact map overlap analysis

in Integrative Bioinformatics

Kevan Baker
Nathaniel Hughes
Sutanu Bhattacharya

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1358550

2,678 views
1 citation

Original Research

Published on 06 Feb 2024

MRSLpred—a hybrid approach for predicting multi-label subcellular localization of mRNA at the genome scale

in Integrative Bioinformatics

Shubham Choudhury
Nisha Bajiya
Sumeet Patiyal
Gajendra P. S. Raghava

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1341479

1,662 views
5 citations

Perspective

Published on 08 Jan 2024

No-boundary thinking for artificial intelligence in bioinformatics and education

in Integrative Bioinformatics

Prajay Patel
Nisha Pillai
Inimary Toby

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1332902

2,739 views
2 citations

Hypothesis and Theory

Published on 05 Jan 2024

RxNorm for drug name normalization: a case study of prescription opioids in the FDA adverse events reporting system

in Integrative Bioinformatics

Huyen Le
Ru Chen
Stephen Harris
Hong Fang
Beverly Lyn-Cook
Huixiao Hong
Weigong Ge
Paul Rogers
Weida Tong
Wen Zou

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1328613

2,966 views
4 citations

Original Research

Published on 14 Nov 2023

Development of an antimicrobial resistance plasmid transfer gene database for enteric bacteria

in Integrative Bioinformatics

Suad Algarni
Steven L. Foley
Hailin Tang
Shaohua Zhao
Dereje D. Gudeta
Bijay K. Khajanchi
Steven C. Ricke
Jing Han

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1279359

2,319 views
5 citations

Original Research

Published on 11 Oct 2023

VariantSurvival: a tool to identify genotype–treatment response

in Integrative Bioinformatics

Thomas Krannich
Marina Herrera Sarrias
Hiba Ben Aribi
Moustafa Shokrof
Alfredo Iacoangeli
Ammar Al-Chalabi
Fritz J. Sedlazeck
Ben Busby
Ahmad Al Khleifat

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1277923

1,984 views

Editorial

Published on 21 Aug 2023

Editorial: Insights in integrative bioinformatics–2021

in Integrative Bioinformatics

Zhi-Ping Liu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1267370

1,119 views

Review

Published on 04 Aug 2023

Omics data integration in computational biology viewed through the prism of machine learning paradigms

in Integrative Bioinformatics

Aziz Fouché
Andrei Zinovyev

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1191961

5,055 views
5 citations

Editorial

Published on 04 Aug 2023

Editorial: Transparent machine learning in bio-medicine

in Integrative Bioinformatics

Juan G. Diaz Ochoa
André Marquardt

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1264803

1,630 views
1 citation