Abstract
Alopecia is a common problem that affects almost every age group and is considered to be an issue for cosmetic or psychiatric reasons. The loss of hair follicles (HFs) and hair caused by alopecia impairs self-esteem, thermoregulation, tactile sensation and protection from ultraviolet light. One strategy to solve this problem is HF regeneration. Many signalling pathways and molecules participate in the morphology and regeneration of HF, such as Wnt/β-catenin, Sonic hedgehog, bone morphogenetic protein and Notch. Non-coding RNAs (ncRNAs), especially microRNAs and long ncRNAs, have significant modulatory roles in HF development and regeneration via regulation of these signalling pathways. This review provides a comprehensive overview of the status and future prospects of ncRNAs in HF regeneration and could prompt novel ncRNA-based therapeutic strategies.
Introduction
Hair follicles (HFs), which protrude from mammalian skin and are considered to be mini-organs, are formed via epidermis–dermis interactions in the embryo (). Due to the presence of stem cells, HF periodically regenerate to produce keratinised hair continuously throughout life (). Hairs grow from HFs and absorb nutrients from the body to support their growth. Decreases in HF regeneration are a result of aging and some diseases, cause alopecia (). Hair is not only important for aesthetic reasons, but also plays a crucial role in thermoregulation, tactile sensation and protection from ultraviolet (UV) light (; ).
Alopecia is a common problem that affects almost every age group. It is considered to be an issue for cosmetic or psychiatric reasons, especially in women. Alopecia is typically categorised as scarring alopecia or non-scarring alopecia, and the latter can be further divided into seven subtypes according to the systemic cause, such as alopecia areata or androgenetic alopecia (). Among Caucasians, the morbidity rate for androgenetic alopecia is roughly 45% (; ), while in China, the rates are 21.3% and 6% for males and females, respectively (; ). This indicates that hair loss is a serious problem that must be solved urgently. The diagnosis and clinical treatment of alopecia must be improved, because most therapeutic strategies available today are palliative.
Non-coding RNAs (ncRNAs) are ubiquitous throughout the human genome. Unlike mRNAs, ncRNAs do not encode proteins, although they do play a significant modulatory role in various biological processes, such as cell proliferation, the cell cycle, epigenetic modification and apoptosis (). There are several types of ncRNA, including small nuclear RNAs, small nucleolar RNAs, ribosomal RNAs, large intergenic ncRNAs, microRNAs (miRNAs) and long ncRNAs (lncRNAs) (). The ncRNAs modulate gene expression by serving as transcriptional and post-transcriptional regulators within complex regulatory networks (; ). Accumulating evidence indicates that several ncRNAs are associated with the development and regeneration of HFs (; ; ). Increasing our understanding of the roles of ncRNAs in HFs could inspire novel strategies for developing ncRNA-based therapeutics.
The Anatomy, Morphogenesis, and Cycling of Hair Follicles
Hair follicles are dynamic mini-organs and their development has been studied extensively (). HFs and keratinised hair are present on most of the body’s surface, except for the palms, plantar, lips, papilla and parts of the urogenital tissues. The distribution, quantity and texture of hair are primarily driven by sex hormones.
Hair Follicle Anatomy
Hair follicles arise from reciprocal interactions among ectoderm-mesoderm tissues, and are comprised of eight cell layers (Figures 1B,D). HFs contain multiple cell types, such as melanocytes and dermal papilla cells derived from the neural crest, ectoderm or mesoderm. These cells vary in location, function and gene expression profile (). HFs are situated in the dermis of the skin or within invaginations of the epidermis. Mature HFs consist of a mesenchymal part, including dermal papilla (DP) and a perifollicular connective tissue sheath (CTS), and an epithelial part containing the hair matrix, hair shaft and root sheath (RS). HFs can be divided into three segments: the infundibulum (top layer) from the sebaceous gland opening to the epidermis surface; the isthmus (middle layer) from the sebaceous gland to the bulge at the insertion of the arrector pili muscle; and the inferior segment (bottom layer). The arrector pili muscle connects the HF and adjacent dermis (); cold stimuli induce the arrector pili muscle to contract, which orients hair vertically. The DP is surrounded by the hair matrix at the base of the HF, which contains an abundant neurovascular network that provides nourishment to the HF and supports its sensory function (). Matrix and progenitor cells proliferate and spread throughout the bulb and dermal sheath (DS) (). Matrix cells act as germ cells and participate in HF cycling, while progenitor cells play a role in papilla regeneration and wound healing. The RS, which begins at the epidermis, can be divided into two parts, i.e., the outer root sheath (ORS) and the inner root sheath (IRS). The bulge is located in the ORS, where the arrector pili muscle is inserted. The IRS can be further subdivided from inside to outside into the cuticle, Huxley layer, Henle layer and companion layer (CL). The cuticle is composed of squamous cells in direct contact with the hair shaft, thus contributing to the close relationships among the IRS, hair shaft and keratin production (; ; Figure 1).
FIGURE 1
Hair Follicle Morphogenesis
The embryonic development of HF arises from the reciprocal regulation of mesenchymal and epithelial cells; this process involves many signalling pathways, such as Wnt/β-catenin, Sonic hedgehog (Shh), bone morphogenetic protein (BMP) and Notch (
FIGURE 2

Schematic illustration of selected stages of HF morphogenesis. The morphogenesis of the HF can be roughly divided into three phases (i.e., induction, organogenesis and cytodifferentiation) and eight stages. The boundaries between these phases are not clear. The interactions associated with the phases are listed below the illustration (
Hair Follicle Induction
The initial signal for HF induction comes from the dermis and is received by epithelial cells (
First, specialised mesenchymal fibroblasts gather below the epidermis. This aggregative phenomenon is directly associated with regulation of versican expression by Wnt/β-catenin (
Ectodysplasin-A (EDA)/EDA receptor (EDAR)/nuclear factor-kappa B (NF-κB) is another essential signalling pathway for primary placode maintenance (
Hair Follicle Organogenesis
Placode formation is followed by dermal condensation (DC) formation and placode growth. The formation of DC, the precursor of DP, is the key step in HF organogenesis (
In the later period of organogenesis, DC further develops into DP. Subsequently, cells from the epithelial compartment differentiate into specific tissues, such as IRS, ORS, etc. Wnt1a maintains the characteristics of DP cells (DPCs) and promotes HF regeneration (
Cytodifferentiation
The most obvious characteristic of this phase is the differentiation of cells among epithelial and mesenchymal compartments, which involves numerous signalling pathways and molecules. Shh takes part in the differentiation of RS via activation of its downstream target, smoothened (
Hair Follicle Cycling
Hair follicle cycling is the process by which mature HFs regenerate. The morphology and gene expression profiles of HF undergo periodic changes in three phases, i.e., anagen, catagen and telogen phases. Only the lower ∼2/3 of the HF undergoes this cycling, while the upper 1/3 maintains its structure (
FIGURE 3

Diagram of selected stages of the HF cycle. The HF cycle can be divided into three phases, i.e., anagen, catagen, telogen. Once it matures, the HF enters into catagen to begin the cycle, following the activation of numerous signals. In catagen, the lower 2/3 of the HF regresses due to apoptosis in the IRS, ORS and hair matrix, and eventually forms the epithelial column. The DP moves up and is in close proximity to the bulge. In the telogen, the primary HS transforms into the club hair, and proximity between the DP and bulge is maintained. The interaction between the bulge and DP activates the transition to anagen. The stem cells in the upper 1/3 of the HF are activated. The HF grows downward to construct the bulb and other structures. New hair is generated, and the old club hair is shed. The signalling pathways involved in the transition are indicated in the bubbles (
Following the interplay among DPCs and HFSCs, involving Wnt, BMP and TGF, the next cycle begins and repeats (
The transition from anagen to catagen is the result of crosstalk between tumour necrosis factor α (TNF-α), vitamin D receptor (VDR) and retinoic acid (
Hair follicle cycling is a complicated process involving interactions among many signalling pathways. Although some regulatory mechanisms have been investigated, the complete process has yet to be fully elucidated.
Characteristics of Non-Coding RNA
There are many classes of ncRNA, which constitute a large fraction of the transcriptome. By binding to target genes, RNAs and proteins, ncRNAs perform modulatory functions in most biological processes. Of the many types of ncRNA, miRNAs and lncRNAs have the most prominent regulatory roles (
MicroRNA and Long Non-coding RNA Biogenesis
MicroRNAs and lncRNAs constitute the majority of ncRNAs in eukaryotes. miRNAs are typically 18–25 nucleotides long and are involved in post-transcriptional gene regulation (
Long ncRNAs are >200 nucleotides long and are involved in various developmental processes (
Non-coding RNA Functions
The ncRNAs perform diverse regulatory functions in most biological processes; they are associated with physiology, cancer, neuropathy, immunological disorders and cardiovascular diseases (
MicroRNAs regulate gene expression by guiding Argonaute proteins to specific sites on mRNA 3′-untranslated regions via their ‘seed’ regions (5–8 nucleotides) (
Until recently, lncRNAs were dismissed as transcriptional noise. With the rapid development of high-throughput sequencing technology, the functions of many lncRNAs have been elucidated, although most remain uncharacterised. lncRNAs function by interacting with DNA, RNA or proteins. Of the numerous lncRNAs discovered, some have been well characterised. The lncRNA X-inactive specific transcript (Xist) directly interacts with the SHARP protein, which then recruits SMRT and triggers gene silencing in female mammals (
Role of Non-coding RNAs in the Regulation of Hair Follicle Development
There is accumulating evidence that the morphogenesis and regeneration of HFs described above are regulated by several types of ncRNA. Thus, the regulation of ncRNAs may determine the developmental fate of HFs. The ncRNAs with explicit functions are summarised in Tables 1, 2.
TABLE 1
| MiRNA | Expression location in HFs | Target genes | Function in HFs |
| miR-10a ( | Unknown | Bmp7 | DPCs proliferation ↓ |
| miR-22 ( | DPCs | Lef-1, STK40, TP63, Dlx3, Foxn1, Hoxc13 | HF stem cells proliferation and differentiation ↓, keratinocyte expansion and differentiation ↓ |
| miR-24 ( | IRS | Tcf-3, β-catenin | Hair keratinocyte differentiation ↑ |
| miR-26a ( | DPCs | Smad1 | DPCs proliferation ↓ |
| miR-29a ( | Hair matrix, IRS | Lrp6, Ctnnb1, Bmpr1a | HF stem cells proliferation ↓, matrix proliferation ↓ |
| miR-31 ( | Hair matrix, IRS, ORS | Krt16, Krt17, Dlx3, Fgf10, STK40, LATS2, Tgf-β2 | Hair keratinocyte differentiation -, matrix cells proliferation ↑ |
| miR-137 ( | Unknown | Mitf | Hair pigmentation ↓ |
| miR-140 ( | Extracellular vesicles of DPCs | Bmp2 | ORS proliferation↑, matrix cells proliferation ↑ |
| miR-148a ( | Unknown | Bmp7 | DPCs proliferation ↓ |
| miR-195 ( | DPCs | Lrp6 | HF induction of DPC ↓ |
| miR-203 ( | Unknown | DDOST, NAE1 | Not mentioned |
| miR-205 ( | HF stem cells | Inpp4b, Frk, Phlda3, Inppl1 | HF stem cells proliferation ↓,progenitor cell proliferation ↓ |
| miR-214 ( | Hair matrix | EZH2, β-catenin | HF stem cells proliferation and differentiation ↓, matrix proliferation ↓, progenitor cell migration - |
| miR-218 ( | Unknown | SFRP2 | HF growth ↑, hair cycle ↑ |
| miR-339 ( | HF stem cells | Dlx5 | HF stem cells differentiation ↓ |
MicroRNAs associated to HFs.
↑: promote, ↓: inhibit, -: unknown.
TABLE 2
| LncRNA | MiRNA of axis | Expression location in HFs | Target genes | Function in HFs |
| lncRNA-Xist ( | miR-424 | DP in vitro (3D) | Shh | DPCs activity and proliferation, DP markers expression ↑ |
| lncRN-PCAT1 ( | miR-329 | DP in vitro (3D) | Wnt10b | DPCs Characteristics, DP markers expression ↑ |
| lncRNA-5322 ( | miR-19b | HFSC | MPK1, PI3K, AKT | HF stem cells proliferation and differentiation ↑ |
| lncRNA-5322 ( | miR-21 | HFSC, HFs epithelium | Pten, Pdcd4, Timp3 and Tpm1, BMP | HF stem cells proliferation and differentiation ↑ |
Long ncRNAs associated to HFs.
↑: promote, ↓: inhibit, -: unknown.
Many ncRNAs modulate HF development by targeting one or multiple signalling pathways. For example, the ncRNA miRNA-214 decreases β-catenin expression directly, and can also target EZH2 to exert the same effect. Overexpression of miRNA-214 leads to abnormal HF patterns and hair formation, and this phenotype can be rescued by Wnt agonists. miRNA-214 regulates HFs by directly binding to the 3′-untranslated region of β-catenin (
The modulatory functions of lncRNAs often occur via gene methylation. Three lncRNAs, H19, RP11-766N7.3 and HOTAIR, are differentially expressed in low- and high-passage DPCs, and regulate development by triggering methylation of Wnt inhibitory factor-1, a key suppressor of the Wnt/β-catenin pathway (
Surprisingly few studies have reported direct regulation of HF signalling pathways by lncRNAs. The lncRNA H19, which was identified in Liaoning cashmere goats via crosslinking and immunoprecipitation-sequencing, may target miRNAs (miR301a-3p, miR301b-3p, and miR766-5p) that are predicted to be involved in hair shaft formation (
Roles of Non-Coding RNAs in Specific Parts of the Hair Follicle
Non-coding RNAs and Hair Follicle Stem Cells
Various types of stem cells reside in the mammalian epidermis, where they proliferate and differentiate in response to wounding to maintain skin homeostasis (
Highly expressed miRNAs typically play critical regulatory roles in specific cell and tissue types (
Compared to other cells in the HF, PlncRNA-1, TGF-β1, Wnt and β-catenin are all significantly downregulated in HFSCs. Transfection of HFSCs with PlncRNA-1 causes the upregulation of TGF-β1, Wnt and β-catenin, promoting HFSC proliferation and differentiation without affecting stemness. This positive effect can be blocked by the TGF-β1 inhibitor, LY2109761 (
Exosomes of DPCs play a key role in the differentiation of HFSCs in the HF. To investigate the pathways regulated by DPC exosomes during HF cycling,
Non-coding RNAs and Dermal Papillae
Mesenchymal cells located in the DP are intimately involved in the development and regeneration of HFs. Aggregates of these cells are the precursors of the DP and release the initial signals that trigger HF development (
Based on gene chip and high-throughput sequencing data,
Dermal papilla cells cultured in 3D regain their ability to induce HF formation, unlike those cultured in 2D. However, the mechanisms underlying this phenomenon are still unclear (
Non-coding RNAs and Hair Follicle Pigmentation
Hair shaft pigmentation occurs via successive interactions between HF pigmentary units, which consist of follicular melanocytes, matrix keratinocytes and DP fibroblasts. Unlike epidermal pigmentation, the hair shaft pigmentation process is intermittent, occurring only during the anagen phase of the HF cycle (
Advances in sequencing technologies have facilitated the discovery of several miRNAs involved in pigmentation.
Compared to miRNAs, relatively few lncRNAs have been found to be involved in melanogenesis. The lncRNA taurine upregulated gene 1 (TUG1) is downregulated following UV-B exposure, which suggests that TUG1 plays a negative role in UV-B-induced melanogenesis. TUG1 may function via the extracellular-regulated protein kinase signalling pathway, and its inhibition may upregulate melanogenesis-associated genes (
Clinical Translation of Non-Coding RNA-Based Treatments for Hair Follicle Regeneration
Although ncRNAs do not encode proteins, their ubiquity and robust regulatory abilities make them potential targets for clinical treatments (
Delivery Systems for Non-coding RNAs
The two major categories of ncRNA delivery system are viral and non-viral vectors. There are four kinds of viral vector: retroviruses, lentiviruses, adeno-associated viruses and adenoviruses. Viral vectors are efficient and can achieve relatively stable and prolonged ncRNA expression compared to non-viral vectors. Nevertheless, issues such as immunological toxicity, high mutation rates and off-target effects limit the clinical utilization of viral delivery systems (
Non-viral systems include naked oligonucleotides, chemically modified oligonucleotides, lipid-based vectors, dendrimers, natural and synthetic polymers and exosomes (
Dendrimers also represent attractive RNA delivery systems. In one study, a novel dendrimer complex was constructed by attaching EpDT3, a 19-nucleotide RNA aptamer, and polyethylene glycol (PEG) to the surface of a poly-amidoamine, which was used as a vector to deliver lncRNA (
Recently, spherical nucleic acid (SNA) has shown great promise as a drug delivery system. SNA is a nanostructure composed of chemically modified nanoparticles at its core, which is surrounded by a shell of highly arranged oligonucleotides. Unlike stranded nucleotides, SNA can enter into cells without the need for transfection reagents (
Non-coding RNA-Based Treatments for Hair Loss
Currently, therapies for hair loss are focused on HF transplantation and drug intervention. However, the costs of transplantation are high and the effectiveness of the available drugs is disputable. On the other hand, ncRNA-based therapeutic strategies for alopecia show great clinical potential. The diagnosis and classification of alopecia are mainly based on clinical symptoms, medical history (e.g., drug use and diseases), trichoscopy and biopsies (
The pathogenesis of hair loss is complex and varies among individuals. For example, although autoimmune processes are known to be involved in the pathogenesis of alopecia areata, the disease aetiology is still not clear (
Dermal papillae are crucial centres of HF regeneration; 3D-cultured DPCs can regenerate HF (
Non-coding RNAs have potential for treating hair loss. Research has focused more on the effects of ncRNA in one specific organ, while ncRNAs are not expressed only in specific sites (
Concluding Remarks and Future Directions
Hair loss, which is caused by many factors, is far from being cured due to its complex mechanisms. Although hair loss is not regarded as a disease in most circumstances, it significantly impacts the social life and mental health of patients and can cause depression, especially in women (
Non-coding RNAs are regulatory biomolecules that account for a large proportion of the human genome, despite not encoding proteins. Many ncRNAs are enriched in the skin and HFs, and are involved in their formation. A complex regulatory network of ncRNAs is intimately involved in HF development and regeneration. Among the various types of ncRNAs, miRNAs and lncRNAs are critical modulators of physiological and pathological processes. Recently, with the advent of novel sequencing technologies, a plethora of ncRNAs have been identified and found to regulate HF-associated mechanisms, illustrating their promise as targets for hair loss therapies. Current research exploring the regulatory mechanisms of ncRNAs in the HF tend to use high-throughput techniques (such as microarrays and RNA chips) to acquire large genetic and transcriptomics datasets, utilizing bioinformatics methods to analyse potential targets in relevant signalling pathways and verifying the ncRNA mechanisms discovered via omics analyses. However, these verification processes have largely remained at the in vitro phase, and in vivo studies are lacking. Therefore, it is necessary to characterise more ncRNAs experimentally, and to investigate the specific regulatory mechanisms of action of the discovered ncRNAs in HFs in vivo to develop clinically applicable ncRNA-based therapies.
During ncRNA therapy development, the drug delivery system must be considered. As discussed above, both viral and non-viral systems show promise for delivering specific RNAs; however, issues such as biotoxicity and inefficient transfection still limit their clinical progress and must be improved. Although the US Food and Drug Administration has approved several nucleic acid-based therapies for clinical use, efficacy is moderate. SNA shows promise as a robust delivery system for ncRNA-based personalised treatments. Two companies, Exicure and Allergen, are collaborating to discover and develop an SNA-based treatment for hair loss (
Non-coding RNAs, especially miRNAs and lncRNAs, are intimately involved in the regeneration and development of HF, indicating their great potential in the diagnosis and treatment of hair loss among clinical applications. In summary, although many hurdles remain, there has been a great deal of research and preclinical work regarding the potential of ncRNA-based therapies in the field of HF regeneration.
Publisher’s Note
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Statements
Author contributions
MY and XW conceived of topic for this review. All authors listed have made a substantial, direct and intellectual contribution to the work, and approved it for publication.
Funding
This work was financially supported by the National key research and development project (2016YFC1100800 and 2016YFC1100803), the National Natural Science Foundation of China (81772069, 81401591, 81801911, and 81871558), and the Natural Science Foundation of Zhejiang province (LGF20H150004).
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
hair follicle, hair follicle cycling, non-coding RNA, regeneration, alopecia
Citation
Yang M, Weng T, Zhang W, Zhang M, He X, Han C and Wang X (2021) The Roles of Non-coding RNA in the Development and Regeneration of Hair Follicles: Current Status and Further Perspectives. Front. Cell Dev. Biol. 9:720879. doi: 10.3389/fcell.2021.720879
Received
05 June 2021
Accepted
23 September 2021
Published
11 October 2021
Volume
9 - 2021
Edited by
Kunimasa Ohta, Kyushu University, Japan
Reviewed by
Esteban Hoijman, University of Barcelona, Spain; Jacqueline Tabler, Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society (MPG), Germany
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© 2021 Yang, Weng, Zhang, Zhang, He, Han and Wang.
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*Correspondence: Xingang Wang, wangxingang8157@zju.edu.cn
This article was submitted to Morphogenesis and Patterning, a section of the journal Frontiers in Cell and Developmental Biology
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