Frontiers in Genetics | Livestock Genomics

Original Research

Published on 29 Apr 2025

Chromosome-level draft genome assembly of Hypomesus nipponensis reveals transposable element expansion reshaping the genome structure

in Livestock Genomics

Chenzhao Zhu
Youyi Kuang
Zhe Li
Fujiang Tang

Frontiers in Genetics

doi 10.3389/fgene.2025.1502681

2,334 views

Original Research

Published on 28 Apr 2025

Skin transcriptomic and selection signature analyses identify ASIP as a key gene in cattle coat color determination

in Livestock Genomics

Xin Wang
Longxin Xu
Di Zhou
Yanli Lv
Junda Wu
Yuanfeng Zhao
Mengmeng Ni
Wenzhang Zhou
Kaikai Zhang
Hua Wang

Frontiers in Genetics

doi 10.3389/fgene.2025.1577647

2,699 views
2 citations

Original Research

Published on 24 Apr 2025

Genomic and health characteristics of crossbred dairy cattle in central Uganda

in Livestock Genomics

Enrique Sanchez-Molano
Robert Mukiibi
Valentina Riggio
Joel Ogwang
Leonard Kawule
Katali Benda
Peter Beine
Barend M. de Clare Bronsvoort
James Prendergast
Andrea B. Doeschl-Wilson

Frontiers in Genetics

doi 10.3389/fgene.2025.1567910

2,354 views
1 citation

Original Research

Published on 24 Apr 2025

Genetic estimates and genome-wide association studies of antibody response in Tanzanian dairy cattle

in Livestock Genomics

Luis E. Hernandez-Castro
Elizabeth Anne Jessie Cook
Oswald Matika
Isaac Joseph Mengele
Shabani Kiyabo Motto
Shedrack Festo Bwatota
Bibiana Zirra-Shallangwa
Ricardo Pong-Wong
James Prendergast
Raphael Mrode

Frontiers in Genetics

doi 10.3389/fgene.2025.1497355

2,934 views

Original Research

Published on 16 Apr 2025

Discovery of differentially expressed lncRNAs in porcine ovaries with smaller and bigger litter size

in Livestock Genomics

Saixing Duan
Falei Li
Libing Meng
Shimei Cheng
Huangqi Shi
Yingjie Qu
Chaoyue He
Shengyu Gao
Jian Li
Shiduo Sun

Frontiers in Genetics

doi 10.3389/fgene.2025.1498076

2,183 views

Correction

Published on 11 Apr 2025

Corrigendum: Genetic parameters and genome-wide association for milk production traits and somatic cell score in different lactation stages of Shanghai Holstein population

in Livestock Genomics

Dengying Liu
Zhong Xu
Wei Zhao
Shiyi Wang
Tuowu Li
Kai Zhu
Guanglei Liu
Xiaoduo Zhao
Qishan Wang
Yuchun Pan

Frontiers in Genetics

doi 10.3389/fgene.2025.1604082

1,084 views

Review

Published on 24 Mar 2025

Genetic diversity, reproductive performance, and genetic enhancement strategies in Huang-Huai goats

in Livestock Genomics

Kai Quan
Huibin Shi
Caihong Wei
Jun Li
Kun Liu
Huihua Wang
Wei Sun
Haoyuan Han

Frontiers in Genetics

doi 10.3389/fgene.2025.1549051

2,909 views
1 citation

Original Research

Published on 24 Mar 2025

Multi-trait phenotypic modeling through factor analysis and bayesian network learning to develop latent reproductive, body conformational, and carcass-associated traits in admixed beef heifers

in Livestock Genomics

Muhammad Anas
Bin Zhao
Haipeng Yu
Carl R. Dahlen
Kendall C. Swanson
Kris A. Ringwall
Lauren L. Hulsman Hanna

Frontiers in Genetics

doi 10.3389/fgene.2025.1551967

2,631 views
1 citation

Original Research

Published on 19 Mar 2025

Multi-tissue transcriptomic characterization of endogenous retrovirus-derived transcripts in Capra hircus

in Livestock Genomics

Ming-Di Li
Hu-Rong Li
Shao-Hui Ye

Frontiers in Genetics

doi 10.3389/fgene.2025.1544330

2,046 views

Original Research

Published on 19 Mar 2025

Exploring the complex population structure and admixture of four local Hungarian sheep breeds

in Livestock Genomics

Johanna Ramírez-Díaz
Tania Bobbo
Bernt Guldbrandtsen
Anna A. Schönherz
Paolo Cozzi
Szilvia Kusza
Goutam Sahana
Alessandra Stella
Arianna Manunza

Frontiers in Genetics

doi 10.3389/fgene.2025.1507315

4,599 views
2 citations

Original Research

Published on 18 Mar 2025

Genetic diversity and population structure of non-descript cattle in South African smallholder systems

in Livestock Genomics

M. P. Ramoroka
M. D. MacNeil
F. W. C. Neser
S. F. Lashmar
M. L. Makgahlela

Frontiers in Genetics

doi 10.3389/fgene.2025.1535730

4,274 views
4 citations

Original Research

Published on 12 Mar 2025

Genetic determinism of cortisol levels in pig

in Livestock Genomics

Elena Terenina
Nathalie Iannuccelli
Yvon Billon
Katia Fève
Laure Gress
Darya Bazovkina
Pierre Mormede
Catherine Larzul

Frontiers in Genetics

doi 10.3389/fgene.2025.1461385

2,552 views
3 citations

Correction

Published on 06 Mar 2025

Corrigendum: Omics multi-layers networks provide novel mechanistic and functional insights into fat storage and lipid metabolism in poultry

in Livestock Genomics

Farzad Ghafouri
Abolfazl Bahrami
Mostafa Sadeghi
Seyed Reza Miraei-Ashtiani
Maryam Bakherad
Herman W. Barkema
Samantha Larose

Frontiers in Genetics

doi 10.3389/fgene.2025.1572670

1,071 views

Original Research

Published on 05 Mar 2025

Expression quantitative trait loci associated with performance traits, blood biochemical parameters, and cytokine profile in pigs

in Livestock Genomics

Felipe André Oliveira Freitas
Luiz F. Brito
Bárbara Silva-Vignato
Fernanda Nery Ciconello
Vivian Vezzoni de Almeida
Aline Silva Mello Cesar

Frontiers in Genetics

doi 10.3389/fgene.2025.1533424

2,144 views
2 citations

Original Research

Published on 05 Mar 2025

Differential responses of the intestine and liver transcriptome to high levels of plant proteins in diets for large yellow croaker (Larimichthys crocea)

in Livestock Genomics

Qiaozhen Ke
Yin Li
Huasong Weng
Baohua Chen
Jiaying Wang
Ji Zhao
Pengxin Jiang
Peng Xu
Tao Zhou

Frontiers in Genetics

doi 10.3389/fgene.2025.1540305

2,295 views
4 citations

Original Research

Published on 28 Feb 2025

Combined metabolome and transcriptome analysis provides molecular insights into reproductive process in Chuanxiang Black and Landrace pigs

in Livestock Genomics

Jiangling Li
Jinling Zhang
Sujun Zhao
Qiushi Wang
Rui Liu
Xiaohui Chen
Zhiping He

Frontiers in Genetics

doi 10.3389/fgene.2025.1501876

2,084 views

Original Research

Published on 27 Feb 2025

Annotation of cis-regulatory-associated histone modifications in the genomes of two Thoroughbred stallions

in Livestock Genomics

Alexa M. Barber
Nicole B. Kingsley
Sichong Peng
Elena Giulotto
Rebecca R. Bellone
Carrie J. Finno
Ted Kalbfleisch
Jessica L. Petersen

Frontiers in Genetics

doi 10.3389/fgene.2025.1534461

2,409 views

Correction

Published on 20 Feb 2025

Corrigendum: Integrated network analysis to identify key modules and potential hub genes involved in bovine respiratory disease: a systems biology approach

in Livestock Genomics

Aliakbar Hasankhani
Abolfazl Bahrami
Negin Sheybani
Farhang Fatehi
Roxana Abadeh
Hamid Ghaem Maghami Farahani
Mohammad Reza Bahreini Behzadi
Ghazaleh Javanmard
Sadegh Isapour
Hosein Khadem

Frontiers in Genetics

doi 10.3389/fgene.2025.1572285

1,134 views

Correction

Published on 18 Feb 2025

Corrigendum: Construction of a circRNA–lincRNA–lncRNA–miRNA–mRNA ceRNA regulatory network identifies genes and pathways linked to goat fertility

in Livestock Genomics

Farzad Ghafouri
Mostafa Sadeghi
Abolfazl Bahrami
Masoumeh Naserkheil
Vahid Dehghanian Reyhan
Arash Javanmard
Seyed Reza Miraei-Ashtiani
Soheila Ghahremani
Herman W. Barkema
Rostam Abdollahi-Arpanahi

Frontiers in Genetics

doi 10.3389/fgene.2025.1422201

1,657 views

Editorial

Published on 13 Feb 2025

Editorial: Advances and trends in gene expression, regulation, and phenotypic variation in livestock science: a comprehensive review of methods and technologies

in Livestock Genomics

Priyanka Banerjee
Andressa Oliveira de Lima
Loan T. Nguyen
Wellison J. S. Diniz

Frontiers in Genetics

doi 10.3389/fgene.2025.1565301

1,920 views
1 citation

Original Research

Published on 13 Feb 2025

Genetic and metabolic characterization of individual differences in liver fat accumulation in Atlantic salmon

in Livestock Genomics

Siri S. Horn
Anna K. Sonesson
Aleksei Krasnov
Muhammad L. Aslam
Borghild Hillestad
Bente Ruyter

Frontiers in Genetics

doi 10.3389/fgene.2025.1512769

3,006 views
3 citations

Original Research

Published on 31 Jan 2025

Revealing study and breeding implications for production traits and tail characteristics in Simmental cattle by GWAS

in Livestock Genomics

Jie Wang
Na Shen
Kaisen Zhao
Jiayu Liao
Genglong Jiang
Jianghai Xiao
Xianbo Jia
Wenqiang Sun
Songjia Lai

Frontiers in Genetics

doi 10.3389/fgene.2025.1491816

3,971 views
4 citations

Original Research

Published on 23 Jan 2025

Transgenerational epigenetic heritability for growth, body composition, and reproductive traits in Landrace pigs

in Livestock Genomics

Andre C. Araujo
Jay S. Johnson
Jason R. Graham
Jeremy Howard
Yijian Huang
Hinayah R. Oliveira
Luiz F. Brito

Frontiers in Genetics

doi 10.3389/fgene.2024.1526473

5,033 views
2 citations

Brief Research Report

Published on 09 Jan 2025

Variability of PRDM9 in buffaloes

in Livestock Genomics

Luca Godoi Rocha Santana
Jackeline Santos Alves
Fabieli Loise Braga Feitosa
Victoria Camilla Parente Rocha
Humberto Tonhati
Raphael Bermal Costa
Gregório Miguel Ferreira de Camargo

Frontiers in Genetics

doi 10.3389/fgene.2024.1479287

1,671 views

1,404 articles

articles

Chromosome-level draft genome assembly of Hypomesus nipponensis reveals transposable element expansion reshaping the genome structure

Skin transcriptomic and selection signature analyses identify ASIP as a key gene in cattle coat color determination

Genomic and health characteristics of crossbred dairy cattle in central Uganda

Genetic estimates and genome-wide association studies of antibody response in Tanzanian dairy cattle

Discovery of differentially expressed lncRNAs in porcine ovaries with smaller and bigger litter size

Corrigendum: Genetic parameters and genome-wide association for milk production traits and somatic cell score in different lactation stages of Shanghai Holstein population

Genetic diversity, reproductive performance, and genetic enhancement strategies in Huang-Huai goats

Multi-trait phenotypic modeling through factor analysis and bayesian network learning to develop latent reproductive, body conformational, and carcass-associated traits in admixed beef heifers

Multi-tissue transcriptomic characterization of endogenous retrovirus-derived transcripts in Capra hircus

Exploring the complex population structure and admixture of four local Hungarian sheep breeds

Genetic diversity and population structure of non-descript cattle in South African smallholder systems

Genetic determinism of cortisol levels in pig

Corrigendum: Omics multi-layers networks provide novel mechanistic and functional insights into fat storage and lipid metabolism in poultry

Expression quantitative trait loci associated with performance traits, blood biochemical parameters, and cytokine profile in pigs

Differential responses of the intestine and liver transcriptome to high levels of plant proteins in diets for large yellow croaker (Larimichthys crocea)

Combined metabolome and transcriptome analysis provides molecular insights into reproductive process in Chuanxiang Black and Landrace pigs

Annotation of cis-regulatory-associated histone modifications in the genomes of two Thoroughbred stallions

Corrigendum: Integrated network analysis to identify key modules and potential hub genes involved in bovine respiratory disease: a systems biology approach

Corrigendum: Construction of a circRNA–lincRNA–lncRNA–miRNA–mRNA ceRNA regulatory network identifies genes and pathways linked to goat fertility

Editorial: Advances and trends in gene expression, regulation, and phenotypic variation in livestock science: a comprehensive review of methods and technologies

Genetic and metabolic characterization of individual differences in liver fat accumulation in Atlantic salmon

Revealing study and breeding implications for production traits and tail characteristics in Simmental cattle by GWAS

Transgenerational epigenetic heritability for growth, body composition, and reproductive traits in Landrace pigs

Variability of PRDM9 in buffaloes