ORIGINAL RESEARCH article

Front. Immunol.

Sec. Cancer Immunity and Immunotherapy

Volume 16 - 2025 | doi: 10.3389/fimmu.2025.1571508

This article is part of the Research TopicPrecision Immunotherapy and Novel Target Discovery in Hematological MalignancyView all 13 articles

Protective effects for HLA-B*40:01 and C*03:04 in NPM1-mutated AML: result of a large HLA association study

Provisionally accepted
Elke  Rücker-BraunElke Rücker-Braun1,2*Bose  FalkBose Falk2Henning  BaldaufHenning Baldauf2Carolin  MassalskiCarolin Massalski3Gesine  SchäferGesine Schäfer3Heidi  AltmannHeidi Altmann1Jürgen  SauterJürgen Sauter4Ute  Verena SollochUte Verena Solloch4Vinzenz  LangeVinzenz Lange3Katharina  Egger-HeidrichKatharina Egger-Heidrich1Desiree  KunadtDesiree Kunadt1Friedrich  StölzelFriedrich Stölzel1Christoph  RölligChristoph Röllig1Jan  Moritz MiddekeJan Moritz Middeke1Malte  Von BoninMalte Von Bonin1Christian  ThiedeChristian Thiede1Alexander  H SchmidtAlexander H Schmidt2,3,4Martin  BornhauserMartin Bornhauser1Johannes  ScheteligJohannes Schetelig1,2Falk  HeidenreichFalk Heidenreich1,2
  • 1Technical University Dresden, Dresden, Germany
  • 2Clinical Trials Unit (DKMS), Dresden, Lower Saxony, Germany
  • 3DKMS Life Science Lab GmbH, Dresden, Lower Saxony, Germany
  • 4DKMS Group, Tuebingen, Germany

The final, formatted version of the article will be published soon.

Mutations in the nucleophosmin 1 gene (NPM1) are common and recurrent molecular abnormalities in acute myeloid leukemia (AML). NPM1 mutations are considered to be positive prognostic factors. The beneficial effect may be due to immune responses mediated by cytotoxic T cells targeting HLA presented peptides derived from mutated NPM1 and thereby suppressing mutated NPM1-positive hematopoiesis. While the immunogenicity of these NPM1 peptides has not been demonstrated conclusively, certain HLA-types have been linked to a lower risk of NPM1-mutated AML. In a comprehensive HLA association study at 2-field-resolution, we compared the proportions of HLA class I alleles between NPM1-mutated (n=477) and/or DNMT3A-mutated (n=216) patients with AML and a control group of healthy individuals (n=51,890). We found HLA-B*40:01 and HLA-C*03:04 to be significantly underrepresented in NPM1-mutated AML as compared to the control group (4.0% vs 10.2%, p<0.001, and 8.2% vs 15.9%, p<0.001, respectively). This might suggest that neoepitopes presented by these HLA alleles trigger T-cell responses. Online epitope prediction tools predict that mutated-NPM1 derived peptides bind strongly to B*40:01 and to C*03:04. Based on these findings, further studies should confirm the presence and functionality of neo-epitope specific T cells and characterize specific T-cell receptors (TCR). Sequence information might eventually be exploited in immunotherapeutic approaches to treat AML patients with TCR-engineered T cells or bispecific TCR T/NK cell engagers.

Keywords: AML, nucleophosmin 1, NPM1, DNMT3A R882H, HLA class I

Received: 05 Feb 2025; Accepted: 13 May 2025.

Copyright: © 2025 Rücker-Braun, Falk, Baldauf, Massalski, Schäfer, Altmann, Sauter, Solloch, Lange, Egger-Heidrich, Kunadt, Stölzel, Röllig, Middeke, Von Bonin, Thiede, Schmidt, Bornhauser, Schetelig and Heidenreich. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence: Elke Rücker-Braun, Technical University Dresden, Dresden, Germany

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