Multi-omics analysis identifies erythroid cells as the major population in mouse placentas expressing the MHC class II antigen presentation, chemokine, and antibacterial immune response genes

Olga Perik-Zavodskaia^1*Roman Perik-Zavodskii^1*Saleh Alrhmoun¹Kirill Nazarov¹Julia Shevchenko¹Konstantin Zaitsev²Sergey Vital'evich Sennikov^1*

• ¹Research Institute for Fundamental and Clinical Immunology (NIIFKI), Novosibirsk, Russia
• ²Siberian Federal science-clinical center of Federal medicobiological agency, Tomsk, Tomsk Oblast, Russia

Introduction. Pregnancy is a complex process that requires a tightly regulated immune environment to support fetal development and protect against infections. The main barrier between fetus and mother is a specialized organ, the placenta, where the role of specific immune cell populations remains incompletely understood. Methods. In this work, we used spatial transcriptomics at E12.5 to characterize immune and non-immune cell heterogeneity and spatial organization in the mouse placenta. In addition, we performed murine placental mononuclear cell flow cytometry proteomics, murine placental erythroid cell NanoString bulk transcriptomics, and murine placental erythroid cell LegendPlex secretomics to further analyze the immune landscape in the mouse placenta. We also performed single-cell RNA sequencing of human cord blood erythroid cells for cross-species comparisons. Results. Our results show that erythroid cells constitute the predominant immunoregulatory population in murine placentas, comprising more than half of the placental mononuclear cells at E12.5, expressing Ctss, Cd74, H2-Aa, and H2-Ab1 genes involved in antigen presentation via MHC-II, and a PD-L1 checkpoint inhibition molecule gene expression. They also have gene expression of such immunomodulatory molecules as Tgfb1 and Tgfb3 cytokines, Ccl2, Ccl3, Ccl4, Ccl9, Cxcl1, Cxcl12, and Mif chemokines, and antimicrobial protein calprotectin S100a8, S100a9 genes. Discussion. These results indicate that erythroid cells may act as potent regulators of immunity in murine placentas due to their vast number and repertoire of immunoregulatory molecules, shaping the immune landscape through diverse immunoregulatory mechanisms.