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ORIGINAL RESEARCH article

Front. Microbiol.

Sec. Terrestrial Microbiology

Volume 16 - 2025 | doi: 10.3389/fmicb.2025.1663041

This article is part of the Research TopicSoil microbial ecology and soil ecosystem functions for addressing climate change and maintaining ecological sustainabilityView all articles

Soil disinfestation and optimized nutrient management reduces nitrogen leaching and promotes shapes soil microbial community composition in greenhouse cucumber production systems

Provisionally accepted
Xilin  GuanXilin Guan1Bin  LiuBin Liu2Wenfan  BianWenfan Bian1Yufeng  ZhangYufeng Zhang1Xinhao  GaoXinhao Gao1Xinping  ChenXinping Chen1Yan  LiYan Li1Shenzhong  TIANShenzhong TIAN1*
  • 1Shandong Academy of Agricultural Sciences, Jinan, China
  • 2Southwest University, Chongqing, China

The final, formatted version of the article will be published soon.

High nutrient input leads to problems such as excessive accumulation of soil nutrients, and imbalance of microbial communities. However, there remains significant gaps in the impact of soil disinfestation and optimized nutrient management measures on the growth and soil conditions of greenhouse cucumber. This study investigated the effects of non-disinfected soil with conventional nutrient treatment (CK), after disinfection with conventional chicken manure application (FP), after disinfection with bio-organic fertilizer application (BF), and after disinfection with organic materials application (OM) on cucumber growth performance, soil nutrients, and microbial communities. The results indicated that compared to the CK, FP, BF, and OM could significantly increase cucumber yield, dry weight, nitrogen uptake, and the nutritional yield of potassium, calcium, and magnesium, with BF showing the most pronounced effect. Compared with the CK, BF significantly improved cucumber yield, dry weight, nitrogen uptake, and the nutrient accumulation of potassium, calcium, and magnesium.BF effectively alleviated the migration of dissolved inorganic nitrogen in the 0-200 cm soil layer, thereby reducing its loss. In addition, BF reduced the accumulation of nutrients such as total nitrogen, available phosphorus, available potassium, and available magnesium in the 0-20 cm soil layer. The optimization measures altered the species diversity of the soil microbial community. Optimized management altered the composition of the soil microbial community. In the BF group, microorganisms showed a negative correlation with soil properties, while OM was positively correlated with pH and C/N, with norank_c__Subgroup_6 and Gaiella being the dominant bacteria. In the BF group, microbial communities were negatively correlated with soil properties, with norank_c__Subgroup_6 and Gaiella being the dominant bacteria. Functional analysis revealed that carbon and nitrogen metabolism functions were significantly enriched in BF-associated bacteria compared to all other groups.Functional analysis revealed that carbon and nitrogen metabolism functions were significantly enriched in BF-associated bacteria. These findings provide new insights and strategies for saving resources, improving crop quality, and reducing nutrient accumulation and waste.

Keywords: Greenhouse cucumber, Bio-organic fertilizer, nutrient accumulation, microorganisms, Dissolved inorganic nitrogen

Received: 10 Jul 2025; Accepted: 26 Aug 2025.

Copyright: © 2025 Guan, Liu, Bian, Zhang, Gao, Chen, Li and TIAN. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

* Correspondence: Shenzhong TIAN, Shandong Academy of Agricultural Sciences, Jinan, China

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