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EDITORIAL article

Front. Microbiol., 22 August 2025

Sec. Antimicrobials, Resistance and Chemotherapy

Volume 16 - 2025 | https://doi.org/10.3389/fmicb.2025.1677866

This article is part of the Research TopicNavigating Challenges and Innovations in Antimicrobial Resistance, Environmental Microbiology, and Industrial SolutionsView all 10 articles

Editorial: Navigating challenges and innovations in antimicrobial resistance, environmental microbiology, and industrial solutions (ARTEMIS)

  • 1Cancer Research Centre, University College Cork, Cork City, Ireland
  • 2School of Biotechnology and Bioengineering, Institute of Advanced Research, Gandhinagar, Gujarat, India
  • 3Department of Microbiology and Biotechnology, University School of Sciences, Gujarat University, Ahmedabad, Gujarat, India
  • 4Microbiology Department, Gujarat Arts and Science College, Gujarat University, Ahmedabad, Gujarat, India

The silent pandemic of Antimicrobial Resistance (AMR) continues to escalate, posing one of the most significant threats to global health, food security, and development in the 21st century. The complex web of factors driving its emergence and spread transcends clinical settings, deeply embedding itself within our environment and industrial practices. It is from this understanding that our Research Topic, “Navigating Challenges and Innovations in Antimicrobial Resistance: Environmental Microbiology, and Industrial Solutions,” was born.

This Research Topic is proud to be organized in collaboration with the 2-day National Conference on ARTEMIS 2024, held on the 21st and 22nd of March, 2024, at the Institute of Advanced Research in Gandhinagar, India. This pivotal event, sponsored by the Gujarat State Biotechnology Mission (GSBTM), the Science and Engineering Research Board (SERB), and Frontiers, brought together the next generation of scientists to address this global challenge. The conference was a resounding success, hosting 140 participants and featuring vibrant scientific exchange through 27 oral and 46 poster presentations from postgraduate and doctoral students. This Research Topic of articles was conceived to create a lasting, peer-reviewed platform for the ideas and research discussed, uniting researchers to explore the intersections of these critical fields and fostering a holistic approach to understanding and combating AMR. The diverse and innovative articles presented here are a testament to that collaborative vision.

The contributions to this Research Topic highlight three interconnected pillars: the direct challenge of AMR, the crucial role of environmental microbiology, and the development of sustainable industrial and agricultural solutions.

Several articles tackle the challenge of AMR head-on, focusing on improved detection and novel therapeutic strategies. The development of rapid and accurate diagnostics is paramount to effective surveillance and treatment. Addressing this, the work by Zhu et al. provides a valuable new tool with their evaluation of a two-dimensional PCR method for the rapid detection of hypervirulent Klebsiella pneumoniae, a notoriously difficult pathogen. Complementing this, Liang et al. developed three simple and cost-effective assays to detect the activity of the AAC(6′)-Ib-cr enzyme, which confers resistance to multiple antibiotics, offering a practical solution for resource-limited settings. Beyond detection, the search for alternatives to conventional antibiotics is urgent. Wang et al. present a promising approach by displaying a prophage lysin on the surface of Bacillus subtilis spores, creating a potent antibacterial agent against the swine pathogen Streptococcus suis. In a similar vein, Liu et al. explore the natural world for solutions, providing a preliminary but encouraging look into the antimicrobial and antioxidant potential of Magnolia essential oil, a potential source for novel bioactive compounds.

The environment is a critical reservoir and conduit for the spread of resistance genes and resistant organisms. Several of our authors have focused on harnessing the power of microorganisms to remediate and protect our ecosystems. Recognizing that contaminated waterways are hotspots for AMR, Patel et al. demonstrate an innovative solution using a synergistic system of plants and bacteria in floating treatment beds to efficiently remove emerging contaminants from polluted river water. Directly addressing pharmaceutical pollution, Yang et al. isolated and characterized bacteria capable of efficiently degrading the antibiotic neomycin, offering a bioremediation strategy for contaminated wastewater and soil. The impact of industrial pollution is tackled by Zheng et al., who characterized a bacterium from activated sludge capable of degrading N,N-dimethylformamide, a widely used industrial solvent, showcasing the power of microbes in waste treatment.

Finally, this Research Topic underscores the immense potential of microbial solutions in industrial and agricultural contexts, which are key to a sustainable future. In agriculture, Du et al. show how thermophilic microbial agents can accelerate the composting of pig manure and spent mushroom substrate, transforming agricultural waste into a valuable resource. Shifting from waste management to crop protection, Kamath et al. explore the use of siderophores produced by bacteria to defend mung bean plants against fungal disease, presenting a biological alternative to chemical fungicides that can inadvertently drive resistance.

Together, these articles paint a hopeful picture. They showcase a dynamic research landscape where innovative diagnostics, nature-inspired antimicrobials, and powerful bioremediation strategies are being developed. The findings collected here reinforce the necessity of a “One Health” perspective, where the intricate links between human, animal, and environmental health are not just acknowledged but are central to our research endeavors. We extend our sincere gratitude to all the authors who contributed their valuable research and to the reviewers whose diligent efforts upheld the quality of this work. It is our hope that this Research Topic, born from the energy and intellect of the ARTEMIS 2024 conference, will stimulate further discussion, collaboration, and innovation, moving us closer to a world where the threat of antimicrobial resistance is effectively contained.

Author contributions

AS: Funding acquisition, Conceptualization, Resources, Writing – review & editing, Writing – original draft, Supervision. DG: Writing – review & editing. CJ: Writing – review & editing.

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.

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Publisher's note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Keywords: antimicrobial resistance, drug resistance, microbial ecology, drug discovery, quorum sensing, medical microbiology, bioinformatics, industrial microbiology

Citation: Shukla A, Goswami D and Jha CK (2025) Editorial: Navigating challenges and innovations in antimicrobial resistance, environmental microbiology, and industrial solutions (ARTEMIS). Front. Microbiol. 16:1677866. doi: 10.3389/fmicb.2025.1677866

Received: 01 August 2025; Accepted: 08 August 2025;
Published: 22 August 2025.

Edited and reviewed by: Rustam Aminov, University of Aberdeen, United Kingdom

Copyright © 2025 Shukla, Goswami and Jha. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Arpit Shukla, ZHJhcnBpdHNodWtsYUBnbWFpbC5jb20=

Present address: Arpit Shukla, APC Microbiome, University College Cork, Cork City, Ireland

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.