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ORIGINAL RESEARCH article

Front. Microbiol., 13 November 2025

Sec. Antimicrobials, Resistance and Chemotherapy

Volume 16 - 2025 | https://doi.org/10.3389/fmicb.2025.1681222

This article is part of the Research TopicIntegrating Health: a One Health Approach to Antimicrobial Resistance and Sustainable PracticesView all 11 articles

The dltC gene contributes to polyhexamethylene biguanide resistance in Staphylococcus aureus

Chenyang Guo&#x;Chenyang Guo1Congcong Wang&#x;Congcong Wang1Qihui Chen&#x;Qihui Chen1Sophia Hao ZhengSophia Hao Zheng2Fengji ZhangFengji Zhang1Jiayu YanJiayu Yan3Haoyang Brady LongHaoyang Brady Long4Jing LuoJing Luo1Xiaoyan XuanXiaoyan Xuan1Peng WangPeng Wang1Huaixin Zheng
Huaixin Zheng1*
  • 1Department of Microbiology and Immunology, School of Basic Medical Sciences, Zhengzhou University, Zhengzhou, China
  • 2Keystone Academy, Beijing, China
  • 3Department of Animal Biology, College of Agricultural and Environmental Sciences, University of California, Davis, Davis, CA, United States
  • 4Nanjing Foreign Language School, Nanjing, China

As the efficacy of conventional antibiotics continues to decline due to antibiotic resistance, there is an urgent need for alternative antimicrobial strategies. Polyhexamethylene biguanide (PHMB), a cationic polymer with broad-spectrum antimicrobial activity and low toxicity, has been extensively used in medical and personal care applications. Although no definitive cases of bacterial resistance to PHMB have been reported, resistance to other cationic agents suggests the potential resistance to PHMB. In this study, Staphylococcus aureus was cultivated in the presence of a sublethal concentration of PHMB for 30 days, during which the organism developed inheritable resistance. A quantitative proteomics study identified differential expression of the DltC protein, which is associated with cell wall biosynthesis. Our findings revealed structural and chemical alterations in the bacterial cell wall, resulting in a surface with increased hydrophobicity, which leads to PHMB resistance. Furthermore, the adaptive PHMB-resistant strains exhibited elevated sensitivity to the hydrophobic antibiotic chloramphenicol and enhanced resistance to the hydrophilic antibiotics gentamicin and kanamycin, consistent with the resistance mechanism uncovered in this study. These results provide new insights into potential resistance mechanisms against PHMB and offer a foundation for its rational use and future antimicrobial development.

1 Introduction

Staphylococcus aureus (S. aureus) is a common bacterial pathogen first discovered by Alexander Ogston in 1880 (Guo et al., 2020). Clinically significant, it is carried in the nasal cavity of approximately 20–40% of the population (Wertheim et al., 2005; Becker et al., 2017) and can cause infections ranging from mild skin and soft tissue infections (SSTIs) to severe invasive infections, such as pneumonia, bacteremia, infective endocarditis, and osteomyelitis (Lowy, 1998; Humphreys, 2012; Klevens et al., 2007; Rasigade et al., 2014). Additionally, S. aureus frequently contaminates medical implants, becoming a major source of nosocomial infections (Tong et al., 2015). Over the past few decades, the incidence of SSTIs has steadily increased globally, with hospitalizations associated with S. aureus rising significantly in countries such as the United States, the United Kingdom, and Australia (Hersh et al., 2008; Vaska et al., 2012; Hayward et al., 2008).

The emergence of methicillin-resistant Staphylococcus aureus (MRSA) has further complicated the treatment of SSTIs (Mediavilla et al., 2012; Lakhundi and Zhang, 2018). In China, approximately 60% of clinical S. aureus isolates are MRSA, with morbidity and mortality rates significantly higher than those of methicillin-sensitive Staphylococcus aureus (MSSA) (Xiao et al., 2011; Ippolito et al., 2010). According to data from the U. S. Centers for Disease Control and Prevention (CDC), the mortality rate associated with MRSA infections has surpassed that of AIDS and Parkinson’s disease (Lessa et al., 2012). With the widespread use of antibiotics, the problem of antibiotic resistance in MRSA has become increasingly severe (Chambers and Deleo, 2009; Kuroda et al., 2001). MRSA exhibits resistance to multiple classes of antibiotics, including β-lactams, tetracyclines, and aminoglycosides (Jensen and Lyon, 2009). The prevalence of MRSA not only complicates the treatment of S. aureus infections but also imposes a significant burden on public health (McCaig et al., 2006). Moreover, community-associated MRSA strains often exhibit higher virulence, such as the production of Panton-Valentine leukocidin (PVL), further exacerbating the severity of infections (Francis et al., 2005; Herold et al., 1998).

In the face of the growing issue of antibiotic resistance, there is an urgent need to develop and utilize novel antimicrobial agents. Polyhexamethylene biguanide (PHMB) is a cationic polymer with broad-spectrum antibacterial activity and has been widely used in the medical and personal care fields (Allen et al., 2004; Mori et al., 2007; Lucas et al., 2009; Hubner and Kramer, 2010; Alves et al., 2021; Asiedu-Gyekye et al., 2015). Studies have shown that PHMB promotes wound healing, reduces bacterial load, and effectively kills S. aureus and Klebsiella pneumoniae (To et al., 2016; Yim et al., 2023). The cationic structure of PHMB allows it to interact with the negatively charged bacterial cell membrane, thereby disrupting the membrane and causing bacterial death (Scientific Committee on Consumer and Bernauer, 2015; Ntow-Boahene et al., 2023). Additionally, PHMB is able to enter cells, bind to DNA, and inhibit bacterial replication (Chindera et al., 2016; Sowlati-Hashjin et al., 2020).

Although studies have shown that the use of antimicrobial agents in personal care products has minimal impact on microbial resistance, associated risks still exist (Gilbert and McBain, 2003). PHMB exhibits good antibacterial activity, but its long-term use may pose a risk of bacterial resistance. While no formal reports of PHMB resistance have been made (Wessels and Ingmer, 2013), studies have observed bacterial resistance to other cationic disinfectants, such as chlorhexidine (CHX) (Huang et al., 2022; Stickler, 2002). This study investigated whether prolonged exposure to sublethal dose of PHMB could lead to the development of resistance in S. aureus, and applied techniques such as proteomics to analyze the mechanisms of resistance. The results elicited a novel mechanism of antimicrobial resistance and provided insights for prevention and control of antimicrobial resistance.

2 Materials and methods

2.1 Bacterial strains and culture methods

This study strictly adheres to the “Ethical Review Measures for Human Biomedical Research” published by the National Health and Family Planning Commission of the People’s Republic of China and has obtained informed consent from all participants. The bacterial strains used in this study include Methicillin-resistant Staphylococcus aureus (MRSA) ATCC 43300, Staphylococcus aureus ATCC 25923, Escherichia coli DH5α, and Staphylococcus aureus RN4220 (this strain was induced from NCTC 8325 by ultraviolet and chemical methods to form a mutant with a defective restriction endonuclease). All strains were obtained through commercial purchase or laboratory donation.

For culture conditions, the Escherichia coli DH5α strain was cultured using LB (Luria-Bertani) medium, while the other Staphylococcus aureus strains were cultured in TSB (Tryptic Soy Broth) or B2 broth (Sato'o et al., 2018) to ensure appropriate experimental conditions and data reliability.

2.2 Growth curve determination

Bacterial strains were inoculated into fresh TSB medium and incubated overnight at 37 °C with shaking at 220 rpm for 15–16 h. Then, 400 μL of the overnight culture was transferred to 40 mL of fresh TSB medium at a 1:100 dilution for subculturing. The growth curve was monitored using a microplate reader at an optical density of 600 nm (OD600), with absorbance measurements taken every hour. Three independent replicates were performed for each experiment.

2.3 Minimum inhibitory concentration (MIC) determination of PHMB

A 200 μL aliquot of the overnight bacterial culture was diluted 1:100 into 20 mL of fresh tryptic soy broth (TSB) and incubated at 37 °C with shaking at 220 rpm for 3–4 h until reaching the logarithmic growth phase. Then, 40 μL of this culture was inoculated into 4 mL of TSB containing various concentrations of PHMB and incubated under the same conditions for 24 h. OD600 was measured using a microplate reader to determine the MIC of PHMB.

Two types of culture containers were used. Initially, MIC assays and resistant strain screening were conducted in 96-well microtiter plates. For subsequent assays involving dltC overexpression strains, sterile glass tubes were used. Aside from the difference in containers, all other procedures were identical.

As PHMB increases in concentration, it leads to increased solution turbidity, independent of bacterial growth. Therefore, MIC was determined by the change in OD600 between 0 h and 24 h. When no change in OD600 was observed, the corresponding PHMB concentration was defined as the MIC.

2.4 Spot test

Spot tests were performed essentially as described elsewhere (Wood et al., 2018). A series of gradient dilutions were prepared from bacterial cultures in the logarithmic phase, diluted up to 1:107. Using a multichannel pipette, 5 μL of each diluted bacterial suspension was spotted onto TSB agar plates containing different concentrations of PHMB. The plates were then incubated overnight at 37 °C in a constant-temperature incubator to observe colony growth.

2.5 Transmission electron microscopy observation

TEM observation was performed as previously described (Li et al., 2021). Briefly, 3 mL of overnight culture was centrifuged, and the bacterial pellet was washed three times with PBS. The pellet was fixed in 2.5% glutaraldehyde at 4 °C for 12 h, followed by three PBS washes and pre-embedding in 1% agarose. Fixation was continued with 1% osmium tetroxide in 0.1 M PBS at room temperature for 2 h. After PBS washes, samples were dehydrated through an ethanol gradient, embedded in acetone and 812 resin, sectioned, and stained with 2% uranyl acetate and lead citrate. Images were acquired using transmission electron microscope by Servicebio (Wuhan, China).

2.6 Proteomics analysis

Proteomic analysis was performed as previously described (Gao et al., 2023) by Gene Create Biolabs Inc. (Wuhan, China). A 250 mL overnight culture was centrifuged, and the pellet was washed three times with PBS. Protein extraction buffer (7 M urea, 2 M thiourea, 4% SDS, 40 mM Tris–HCl pH 8.5, 1 mM PMSF, 2 mM EDTA) was added, and the sample was mixed and incubated on ice for 5 min. DTT was added to 10 mM, followed by sonication on ice for 15 min. After centrifugation at 13,000 × g at 4 °C for 20 min, the supernatant was mixed with four volumes of cold acetone and stored at −20 °C overnight. The resulting protein pellet was collected, air-dried, and dissolved in 8 M urea/100 mM TEAB (pH 8.0). DTT (10 mM) was added for reduction at 56 °C for 30 min, followed by alkylation with 55 mM IAM at room temperature for 30 min in the dark. Protein concentration was determined using the Bradford method, and samples were labeled for mass spectrometry.

2.7 Construction of gene knockout and overexpression plasmids

Gene editing was performed according to established protocols for MRSA (Ji, 2020), using the pCasSa plasmid developed by Ji Quanjian’s lab (Chen et al., 2017). The sgRNA spacer sequence targeting dltC was inserted into the pCasSa plasmid using BsaI, yielding pCasSa_dltC_spacer. A ~ 1 kb upstream and downstream homologous arm of dltC was amplified and fused via overlap extension PCR as a repair template, which was inserted into pCasSa_dltC_spacer using XhoI and XbaI to generate the knockout plasmid pCasSa_dltC.

For overexpression, the dltC gene and its native promoter were cloned into the multiple cloning site of the pLI50 vector using EcoRI and XbaI, generating the plasmid pLI50_dltC for dltC overexpression (Table 1).

Table 1
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Table 1. Primers used in this work.

2.8 Plasmid electroporation

Electrocompetent cells of Staphylococcus aureus RN4220, ATCC 25923, and MRSA ATCC 43300 strains were prepared. The recombinant plasmid pLI50_dltC was electroporated into RN4220 using the BioRad Gene Pulser Xcell™ system with the following parameters: 0.2 cm cuvette, 2.9 kV, 25 μF, and 100 Ω. Immediately after electroporation, 1 mL of B2 broth was added, and the cells were incubated at 37 °C with shaking at 100 rpm for 2 h. The suspension was then plated onto TSB agar containing 5 μg/mL chloramphenicol (Cm) and incubated at 37 °C for 2 days. Positive clones were screened by PCR. Verified transformants were cultured in TSB containing 5 μg/mL Cm at 37 °C for 15–16 h. The pLI50_dltC plasmid was extracted from RN4220 (pre-treated with 20 mg/mL lysozyme and 30 U/mL lysostaphin) and subsequently electroporated into MRSA ATCC 43300 and ATCC 25923 competent cells using the same electroporation parameters, adjusting the Cm concentration to 7 μg/mL.

The pCasSa_dltC plasmid was introduced following the same procedure, except that incubation was performed at 30 °C.

2.9 Hydrophobicity test

Bacterial surface hydrophobicity was assessed as described by Buchanan et al. (2005), based on the adsorption of bacteria to n-hexadecane. An overnight culture (200 μL) was diluted 1:100 into 20 mL fresh TSB and incubated at 37 °C with shaking at 220 rpm for 12 h. After incubation, the bacterial cells were washed three times with PBS and resuspended in PBS. The suspension was adjusted to OD600 = 1. Then, 1 mL of this suspension was mixed with 300 μL of n-hexadecane, vortexed for 2 min, and left to stand at room temperature for 30 min. The OD600 of the lower aqueous phase was measured to assess hydrophobicity using the following formula:

Bacterial hydrophobicity = (OD600 before adsorption - OD600 after adsorption) / (OD600 before adsorption) × 100%.

2.10 RNA extraction and reverse transcription quantitative PCR

Total RNA from bacteria was extracted using the Thermo Scientific GeneJET RNA Purification Kit according to the manufacturer’s instructions, with a pre-treatment using 20 mg/mL lysozyme and 30 U/mL lysostaphin. After DNA removal, RNA samples were subjected to cDNA synthesis using Vazyme’s (Nanjing, China) 4 × gDNA wiper Mix and 5 × ChamQ Universal SYBR qPCR Master Mix. The qPCR experiment was conducted using Servicebio’s (Wuhan, China) 2 × Universal Blue SYBR Green qPCR Master Mix and performed on a Thermo (China) QuantStudio 6 Flex fluorescence quantitative PCR system. All PCR reactions were conducted in PCR tubes produced by BBI (Shanghai, China), with the gyrA gene used as the internal control. Gene expression levels were calculated using the 2^(-ΔΔCt) method.

2.11 Bioinformatics analysis

Bioinformatics analyses in this study were conducted within the RStudio environment using R version 4.2.3. Data preprocessing, statistical analysis, and visualization were performed with relevant bioinformatics packages and tools available in R. The analysis workflow was designed to ensure accuracy and reproducibility of the results.

2.12 Statistical analysis

All experiments were conducted with three independent parallel groups to ensure the reliability and reproducibility of the data. Statistical analyses were performed using IBM SPSS Statistics 25 software. Differences between experimental and control groups were assessed using t-tests and non-parametric tests. A significance level of p < 0.05 was considered statistically significant. Additionally, GraphPad Prism 8.0.2 software was used for data visualization to intuitively display the distribution and differences between groups (Table 1).

3 Results

3.1 The MRSA strain exhibited resistance after prolonged exposure to PHMB

The growth curve of the MRSA ATCC 43300 strain (hereafter referred to as MRSA) was first established (Figure 1A), and the MIC of PHMB against MRSA was determined to be 10 μg/mL (Figure 1B). MRSA was continuously passaged for 30 days in TSB containing 2 μg/mL PHMB, maintaining stable growth (OD600 ≈ 1.5; Figure 1C). By day 10, the MIC in both treatment groups increased to 20 μg/mL, while the control remained at 10 μg/mL (Supplementary Figure S1A). On day 20, treatment group #1 remained at 20 μg/mL, while group #2 increased to 35 μg/mL (Supplementary Figure S1B). These MIC values persisted through day 30 (Supplementary Figure S1C). Overall, PHMB MIC showed a progressive increase during selection, indicating the emergence of resistant MRSA strains (Figure 1D), further confirmed by spot test (Figure 1E).

Figure 1
Graphs and images analyze the effects of PHMB on bacterial growth. Graph A shows growth over time, reaching a peak. Graph B shows OD drops at 10 μg/mL PHMB concentration. Graph C displays consistent OD over 30 days of PHMB treatment. Graph D shows MIC levels increase with treatment duration, with statistical significance indicated. Image E compares bacterial cultures under different PHMB concentrations, showing varied responses across control and treatment groups at 0 to 40 μg/mL concentrations.

Figure 1. S. aureus developed resistance after continuous exposure to 2 μg/mL PHMB. (A) Growth curve of MRSA ATCC 43300 based on OD600. (B) MIC of PHMB determined by OD600 changes after 24 h. (C) OD600 changes during 30 days of continuous PHMB exposure. (D) Comparison of MIC values between control and treatment groups on days 10, 20, and 30. (E) Resistance assessment of MRSA-PR via spot plating after 1:107 dilution. One control and two treatment groups were analyzed with two technical replicates per condition. Data shown as mean ± SD from ≥3 independent experiments. ***: p < 0.001.

For subsequent experiments, MRSA strains with elevated MICs after 30-day exposure were designated as PHMB-resistant MRSA (MRSA-PR). From each of Treatment #1 and Treatment #2, 10 colonies were isolated; four colonies (MRSA-PR #1.2, #1.8, #2.4, #2.9) were randomly selected for further analysis (Supplementary Figure S1D), all showing MICs of 20 μg/mL (Supplementary Figures S1E–I), indicating stable resistance phenotypes.

3.2 Physicochemical properties of MRSA-PR

To investigate whether the resistance of MRSA-PR is genetically stable, spot test were performed after passaging the four MRSA-PR groups five times in TSB liquid medium without PHMB. The fifth-generation MRSA-PR strains still exhibited strong resistance to PHMB, confirming the inheritable feature of their PHMB resistance (Figure 2A). The growth state, cell morphology, and structural characteristics of MRSA-PR were compared to those of the wild-type strain. Growth curves showed no significant difference between MRSA-PR and wild-type strains (Figure 2B), indicating resistance did not impair growth. TEM analysis revealed no significant differences in cell area, cell wall thickness, transverse cell diameter or longitudinal cell diameter between MRSA-PR and wild-type cells (Figures 2CG).

Figure 2
A scientific figure with multiple panels showing bacterial growth and analysis under different treatments. Panel A shows after five consecutive passages, the treated strain maintained its resistance phenotype. Panel B displays a growth curve chart plotting OD600 values over time for control and treated samples. Panels C to F present bar graphs comparing cell size, cell wall thickness, and cell diameter in both horizontal and vertical dimensions, with no significant differences indicated. Panel G provides electron micrographs at different magnification levels, illustrating cellular morphology for control and treated samples. Each panel highlights experimental conditions and findings.

Figure 2. MRSA-PR strains exhibit inheritable feature and show similar growth and cell morphology to the wild-type strain. (A) Spot test of MRSA-PR after five passages, using 10-fold serial dilutions plated on TSB agar with 10 μg/mL PHMB. (B) Growth curves of MRSA-PR strains (#1.2, #1.8, #2.4, #2.9) and wild-type. (C–F) Quantitative comparison of cell morphology: surface area (C), cell wall thickness (D), transverse (E) and longitudinal diameter (F). (G) TEM images of wild-type and MRSA-PR strains at 5.0 k, 30.0 k, and 60.0 k magnifications. Data shown as mean ± SD from ≥3 experiments. ns: not significant.

3.3 Upregulation of DltC protein expression in MRSA-PR

To explore the differences in protein expression between the resistant strain MRSA-PR and its parental MRSA strain, proteomic analysis was conducted. Proteomic analysis revealed notable differences in protein expression between MRSA-PR and wild-type strains (Figure 3A). MRSA-PR #1.2 and #1.8 showed similar expression profiles (Figure 3B). Using a threshold of |Log2FC| > 0.3 and p < 0.05, MRSA-PR #1.2 had 296 upregulated and 263 downregulated proteins (Figure 3C), #1.8 had 322 upregulated and 256 downregulated (Figure 3D), and #2.9 had 271 upregulated and 262 downregulated (Figure 3E). Subcellular localization showed most DEPs were intracellular, with an approximate 10:1 ratio (Figures 3FH).

Figure 3
Composite image showing a PCA plot, heatmap, volcano plots, and bar charts. Panel A displays significant differences were observed between the PHMB-treated strain and the control group in the PCA plot. Panel B is a heatmap showing expression levels across the NC, #1.2, #1.8, and #2.9 groups. Panels C, D, and E are volcano plots comparing differential expression with significant points highlighted. Panels F, G, and H are bar charts displaying the number of differentially expressed proteins (DEPs) for each comparison, categorized into cytoplasmic (CYT) and extracellular (EXC).

Figure 3. MRSA-PR strains show distinct protein expression profiles compared to the wild-type. (A) PCA showing protein expression similarities between MRSA-PR (#1.2, #1.8, #2.9) and wild-type. Each group includes three biological replicates. (B) Heatmap of protein abundance across strains. Color intensity reflects relative protein expression levels. (C–E) Volcano plots of DEPs: MRSA-PR vs. wild-type. Red: upregulated; blue: downregulated; gray: not significant. (F–H) Subcellular localization of DEPs in MRSA-PR vs. wild-type. CYT: cytoplasmic; EXC: extracellular.

Additionally, GO and KEGG enrichment analyses revealed subtle functional differences among strains, particularly between MRSA-PR #2.9 and the other two (Supplementary Figures S2A–F). Intersection analysis identified 301 shared DEPs (Figure 4A), which underwent further GO, KEGG, and PPI network analysis (Figures 4BD). Based on these analyses and supporting background research, we identified a key protein — D-alanine–carrier protein (DltC) D-alanine–carrier protein ligase (DltC) — which was significantly upregulated in the MRSA-PR strains.

Figure 4
Venn diagram, bubble plot, bar graph, and network diagram illustrate metabolic and cellular processes. Panel A: Venn diagram of differentially expressed genes. Panel B: GO enrichment analysis; bubble size represents the count, and color indicates the p-value. Panel C: KEGG pathway enrichment analysis; color indicates the p-value. Panel D: Network diagram of gene interactions, color-coded by biological function. Each panel provides insights into intracellular and extracellular metabolic processes with color-coded legends.

Figure 4. The D-alanyl-D-alanine carrier protein (DltC) is upregulated in MRSA-PR strains. (A) Venn diagram of shared DEPs among MRSA-PR strains. A total of 301 DEPs were common to all. (B) GO enrichment analysis of shared DEPs. Top 8 terms per category —biological process (BP), cellular component (CC), and molecular function (MF)—were selected based on -log10(p-value). (C) KEGG pathway enrichment. Top 24 pathways were selected according to -log10(p-value). (D) PPI network of shared DEPs. Top 6 clusters identified by MCODE, color-coded by cluster.

DltC, encoded by the dltC gene within the dlt operon (dltA-D), plays a key role in lipoteichoic acid (LTA) D-alanylation, affecting cell wall structure and surface charge (Santa Maria et al., 2014; Arnaud et al., 2004; Peschel et al., 1999; Peschel et al., 2000; Heaton and Neuhaus, 1994). DltC, as an acyl carrier protein, is post-translationally modified at Ser35 with phosphopantetheine (Ppant) by AcpS (Ma et al., 2018), enabling it to bind D-alanine via ATP hydrolysis (catalyzed by DltA) and transfer it to LTA through interaction with DltB (Figure 5). D-alanylation reduces LTA’s negative charge, altering cell surface hydrophobicity.

Figure 5
Diagram illustrating PHMB targets and resistance mechanisms. The left panel shows lipoteichoic acids interacting with PHMB on the membrane. The right panel depicts PHMB resistance involving proteins DltD, DltA, DltB, and DltC altering lipoteichoic acids with D-Ala additions, using ATP. Phospholipids, PHMB, and a Ppant group are labeled.

Figure 5. Schematic representation of the D-alanylation of lipoteichoic acid mediated by the dltC gene. DltA exhibits catalytic activity. DltB is a member of the membrane-bound O-acyltransferase (MBOAT) superfamily, consisting of a ring-like structure formed by 11 peripheral transmembrane helices. DltC is an acyl carrier protein. The functions of DltD remain unclear. DltC, as an acyl carrier protein, is first modified at its serine 35 (Ser35) residue by the attachment of a 4′-phosphopantetheine (Ppant) group, catalyzed by acyl carrier protein synthase (AcpS). The Ppant group, derived from the conjugation of pantothenic acid and cysteine, enables DltC to be loaded with D-alanine via ATP consumption, catalyzed by DltA. Upon interaction with DltB, the D-alanyl group is subsequently transferred and attached to lipoteichoic acid (LTA). (This Figure was created using Figdraw).

To investigate the potential regulatory mechanism underlying dltC upregulation, whole-genome resequencing was performed to compare the genomic sequences of MRSA-PR strains and the wild-type strain, with a focus on dltC and its associated regulatory regions (data not shown). No mutations were identified in the dltC coding region or its proximal regulatory sequences.

3.4 Increased cell surface hydrophobicity of MRSA-PR strains

To further investigate the resistance mechanisms of MRSA-PR strains, we evaluated changes in bacterial surface hydrophobicity. MRSA-PR strains displayed significantly increased hydrophobicity compared to the wild-type strain, especially MRSA-PR #2.4 and #2.9 (Figure 6A), which correlated with their higher PHMB resistance. Similarly, overexpression of dltC in RN4220, ATCC 25923, and MRSA strains (Figures 6BD) led to increased surface hydrophobicity (Figures 6EG).

Figure 6
Bar and line graphs showing bacterial adherence and response to PHMB. Legend: Panels A, E, F, and G depict the hydrophobicity levels of different bacterial strains with varying levels of significance. Panels B, C, and D display fold-change data. Panels H, I, and J show bacterial growth inhibition by PHMB at different concentrations, highlighting significant differences across strains. Error bars indicate variability, and significance is marked by asterisks.

Figure 6. Overexpression of dltC significantly enhances PHMB resistance in S. aureus. (A–C) Introduction of pLI50_dltC into RN4220, MRSA ATCC 43300, and ATCC 25923., and relative quantification of gene expression was performed using the comparative Ct method (2^(-ΔΔCt)). (D–F) PHMB susceptibility assessed by OD600 changes among dltC-overexpressing strains, wild-type, and empty vector controls. (G–I) Bacterial surface hydrophobicity measured in the three backgrounds. (J) Hydrophobicity comparison between MRSA-PR and wild-type. Hydrophobicity was measured based on the adherence of bacteria to n-hexadecane. Data shown as mean ± SD from ≥3 experiments. ns: not significant; *: p < 0.05; **: p < 0.01; ***: p < 0.001.

Overexpression of dltC also enhanced PHMB resistance. In RN4220, the dltC-overexpressing strain grew at 8 μg/mL PHMB, whereas wild-type and vector controls were inhibited at 4 μg/mL (Figure 6H). Similar results were observed in MRSA and ATCC 25923 backgrounds (Figures 6I,J).

3.5 Changes in the sensitivity of MRSA-PR to other antimicrobial agents

To investigate whether the MRSA-PR strains exhibit similar resistance changes to other antimicrobial agents, MRSA-PR strains were tested against polyhexamethylene guanidine (PHMG), chlorhexidine (CHX), and antibiotics including chloramphenicol (Cm), kanamycin (Kan), and gentamicin (Gen) by spots test. Without antimicrobials, all strains showed good growth (Figure 7A). At 40 μg/mL PHMG, MRSA-PR strains grew at 103–104 dilutions, while the control only grew undiluted (Figure 7B). At 3 μg/mL CHX, the control again grew only undiluted, while MRSA-PR #1.2 and #1.8 grew at 105 dilutions, and #2.4 and #2.9 at 106 (Figure 7C).

Figure 7
Serial dilution images show bacterial growth on agar plates under varying conditions. Panels A to F represent different treatments: antibiotic-free, 40 μg/mL PHMG, 3 μg/mL CHX, 3 μg/mL Cm, 2 μg/mL Gen, and 5 μg/mL Kan. Labels such as Control and #1.2 to #2.9 indicate different samples. Each panel displays the growth pattern from undiluted to seven serial dilutions, illustrating the impact of each treatment on bacterial growth.

Figure 7. MRSA-PR strains show reduced susceptibility to PHMG and CHX, increased sensitivity to Cm, and enhanced resistance to Gen and Kan. (A) The wild-type strain and four MRSA-PR strains were diluted to 1:107 and spotted onto solid agar plates without antimicrobial agents, with two technical replicates per condition. (B–F) Susceptibility of MRSA-PR strains was assessed on agar plates containing PHMG (B), CHX (C), Cm (D), Gen (E), and Kan (F), using the same dilution and spotting procedure. Two technical replicates per condition.

MRSA-PR strains also exhibited altered responses to antibiotics. They were more sensitive to hydrophobic antibiotics (e.g., Cm) but more resistant to hydrophilic ones (e.g., Gen, Kan). At 3 μg/mL Cm, the control grew at a 104 dilution, while MRSA-PR strains only grew at 102–103 (Figure 7D). In contrast, at 2 μg/mL Gen and 5 μg/mL Kan, MRSA-PR strains showed higher resistance than the control, with #2.4 and #2.9 being the most resistant (Figures 7E,F).

4 Discussion

The emergence of antimicrobial resistance is a global concern, particularly in clinical settings where resistant strains complicate treatment. Staphylococcus aureus, a common pathogen, is notorious for rapidly acquiring resistance. PHMB has demonstrated broad-spectrum bactericidal activity, even at concentrations below 10 μg/mL. Previous research has examined the interactions between PHMB and different membrane types, showing that PHMB rapidly binds to negatively charged membranes (Ikeda et al., 1983; Kuroki et al., 2019), primarily by adsorbing onto the surface of phospholipid bilayers (Horner et al., 2015). Moreover, a recent study proposed that PHMB may enter both bacterial and mammalian cells and selectively condense bacterial chromosomes (Chindera et al., 2016; Allen et al., 2006), this phenomenon not fully explained by membrane interactions alone (Ikeda et al., 1983; Broxton et al., 1984a; Broxton et al., 1984b). According to this new model, PHMB polymer chains can penetrate mammalian cell membranes but not the membrane-bound nucleus where genetic material is stored. In contrast, bacteria—being prokaryotes—lack membrane-enclosed organelles and nuclei, allowing PHMB to potentially interact directly with bacterial chromosomes upon cell entry (Sowlati-Hashjin et al., 2020). Although PHMB, as a novel cationic biocide, exhibits significant efficacy against S. aureus and other pathogens, the potential emergence of resistance warrants close attention.

To assess PHMB resistance potential in S. aureus, we used the MRSA ATCC 43300 strain. Upon prolonged exposure to sublethal PHMB concentrations, resistant variants with stably elevated MICs were obtained. These findings support earlier reports of acquired biocide resistance, such as chlorhexidine resistance in Streptococcus mutans (Verspecht et al., 2019).

This study further explored the growth characteristics of the resistant strains. Growth curves of the resistant and wild-type strain were analyzed to determine possible differences in growth patterns. The results showed no significant difference in growth behavior, which contrasts with earlier reports suggesting that resistance acquisition often correlates with a reduced growth rate in bacteria (Theophel et al., 2014). This discrepancy may indicate that PHMB resistance in MRSA does not notably impair growth or metabolic activity. Additionally, TEM imaging also showed no marked morphological changes, differing from prior reports where resistant strains developed thicker cell walls (Mavri and Smole Mozina, 2013). These discrepancies may stem from species-specific structural and resistance mechanisms.

Proteomic analysis identified dltC—a gene encoding the D-alanine–carrier protein within the dlt operon—as significantly upregulated in resistant strains. DltC plays a key role in the D-alanylation of lipoteichoic acid (LTA), a process that reduces the net negative charge of the bacterial cell surface and increases hydrophobicity. This change may hinder PHMB’s binding to the membrane, diminishing its antibacterial effect. To validate this, we constructed dltC overexpression strains, which exhibited significantly increased PHMB resistance. Although a knockout strain could not be obtained—likely due to S. aureus’s inherent transformation barriers or limited CRISPR/Cas9 adaptability—our findings are consistent with previous reports linking dltC upregulation to chlorhexidine resistance (Huang et al., 2022).

We also assessed the cell surface hydrophobicity of both the resistant strains and the dltC-overexpressing strains, the results demonstrated a marked increase in hydrophobicity compared to the wild-type strain. This observation is consistent with previous studies (Kitagawa et al., 2016; El-Banna et al., 2019), it has been reported that bacteria that develop resistance show elevated surface hydrophobicity, supporting a potential link between hydrophobicity and antimicrobial resistance. The increase in hydrophobicity is likely linked to dlt operon upregulation, as enhanced LTA D-alanylation reduces the negative charge of teichoic acids, indirectly increasing surface hydrophobicity, thereby improving bacterial survival upon PHMB exposure.

In addition, the altered sensitivity of resistant strains to other cationic agents (e.g., PHMG and CHX) suggests that increased surface hydrophobicity may decrease the binding efficiency of cationic agents, thereby contributing to enhanced resistance in the same way.

For antibiotics, variations in bacterial susceptibility may similarly be influenced by changes in cell surface hydrophobicity: Gentamicin and kanamycin, both belonging to the aminoglycoside class, contain multiple amino and hydroxyl groups, making them highly charged and strongly hydrophilic. In contrast, chloramphenicol, with its aromatic ring, dichloroacetyl, and nitro groups, is more hydrophobic than gentamicin and kanamycin. Upregulation of the dltC gene increases the hydrophobicity of the bacterial cell surface, which preferentially hinders the uptake of hydrophilic aminoglycosides, thereby enhancing Staphylococcus aureus resistance to these agents, while conversely enhancing sensitivity to chloramphenicol. Notably, MRSA-PR#2.4 and #2.9 exhibited higher hydrophobicity and corresponding trends in antibiotic resistance compared to MRSA-PR#1.2 and #1.8, further validating this hypothesis. PHMB resistance in S. aureus may reshape its antimicrobial susceptibility, potentially driving clinically relevant cross-resistance. For infections with PHMB-resistant strains, antibiotic hydrophilicity and cross-resistance should be considered to guide appropriate drug selection and dosing.

Both MRSA-PR and the dltC-overexpressing strains exhibited significantly higher surface hydrophobicity compared to the wild-type strain. This change may reduce PHMB adsorption, thereby contributing to increased resistance. In this study, we also attempted to measure the Zeta potential of the bacterial cell membrane surface (data not shown), however, the results indicated no significant difference in Zeta potential both the MRSA-PR strains, and the wild-type strain. This result may be attributed to the limited impact of dlt-mediated D-alanylation on the overall surface charge, which may not be sufficient to alter the Zeta potential at a detectable level. Moreover, changes in cell surface hydrophobicity do not necessarily correspond to measurable differences in electrostatic potential, as Zeta potential is influenced by a variety of physicochemical parameters including ionic strength, pH, and surface charge distribution.

Based on whole-genome resequencing data, we examined the sequences of the dlt operon and its associated regulatory genes, such as graR and graS. These analyses revealed no mutations in the coding regions or proximal regulatory sequences of these genes. These findings suggest that the mechanism driving dltC overexpression remains unclear. It is possible that more complex transcriptional or post-transcriptional regulatory processes, rather than direct sequence changes, contribute to the elevated dltC expression observed in resistant strains. Further studies are needed to elucidate the regulatory pathways involved.

This study has several limitations. Although dltC was significantly up-regulated in the resistant strain and associated with increased surface hydrophobicity and PHMB tolerance, other members of the dlt operon, such as dltA and dltD, showed no significant changes in our proteomic analysis, which may reflect post-transcriptional regulation or limited sensitivity of the proteomic approach. We did not directly quantify D-alanylation of teichoic acids, and genetic validation through knockout experiments was not performed; future studies will focus on constructing dltC deletion mutants to directly confirm its role in PHMB resistance. It should also be noted that the level of dltC overexpression in our experiments may not fully replicate the endogenous up-regulation observed in resistant strains. While our data indicate that dltC plays a major role in modulating surface hydrophobicity and PHMB resistance, surface hydrophobicity is a complex phenotype influenced by multiple genetic and physiological factors, including other cell wall–modifying genes, regulatory pathways affecting teichoic acid composition, and changes in membrane lipid content. Therefore, the increased surface hydrophobicity observed in PHMB-resistant strains likely reflects the combined effects of several factors rather than the sole activity of dltC. These limitations highlight the need for further work to comprehensively elucidate the molecular mechanisms underlying altered surface properties in resistant strains.

Additionally, the upregulation of efflux-related proteins (EcsA, MepB, EmrR, NorB) suggests that active efflux may also contribute to PHMB resistance, which warrants further investigation. While this study focused on S. aureus, it remains unclear whether similar mechanisms operate in other Gram-positive species. In Gram-negative bacteria, resistance may involve LPS modification and also warrants further investigation.

In conclusion, this study presents the first systematic investigation of PHMB resistance and its underlying mechanisms in S. aureus. Through phenotypic, morphological, genomic, and proteomic analyses, our findings suggest that the upregulation of the dltC gene, leading to increased cell surface hydrophobicity, plays a pivotal role in resistance. These findings provide novel insights into PHMB resistance in S. aureus and lay the groundwork for future development of targeted strategies to overcome or inhibit this emerging form of antimicrobial resistance.

5 Conclusion

This study successfully selected resistant strains of Staphylococcus aureus by repeatedly exposing the bacteria to sublethal concentrations of PHMB. For the first time, it was confirmed that Staphylococcus aureus gradually develops resistance under the selective pressure of prolonged PHMB exposure.

The resistance of Staphylococcus aureus to PHMB is closely related to the upregulation of the dltC - induced increase in cell surface hydrophobicity.

The upregulation of the dltC expression may be a universal mechanism for Staphylococcus aureus resistance to cationic antimicrobial agents, and changes in bacterial hydrophobicity can significantly alter its resistance to antibiotics.

Data availability statement

The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE [1] partner repository with the dataset identifier PXD069566.

Author contributions

CG: Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft. CW: Conceptualization, Data curation, Investigation, Writing – review & editing. QC: Conceptualization, Data curation, Investigation, Writing – review & editing. SZ: Investigation, Writing – review & editing. FZ: Investigation, Writing – review & editing. JY: Investigation, Writing – review & editing. HL: Investigation, Writing – review & editing. JL: Investigation, Writing – review & editing. XX: Supervision, Writing – review & editing. PW: Supervision, Writing – review & editing. HZ: Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – review & editing.

Funding

The author(s) declare that no financial support was received for the research and/or publication of this article.

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Generative AI statement

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Supplementary material

The Supplementary material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmicb.2025.1681222/full#supplementary-material

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Keywords: Staphylococcus aureus , PHMB, bacterial resistance, dlt operon, hydrophobicity

Citation: Guo C, Wang C, Chen Q, Zheng SH, Zhang F, Yan J, Long HB, Luo J, Xuan X, Wang P and Zheng H (2025) The dltC gene contributes to polyhexamethylene biguanide resistance in Staphylococcus aureus. Front. Microbiol. 16:1681222. doi: 10.3389/fmicb.2025.1681222

Received: 07 August 2025; Accepted: 10 October 2025;
Published: 13 November 2025.

Edited by:

Lucas Carvalho Basilio Azevedo, Federal University of Uberlandia, Brazil

Reviewed by:

Flavia Costa, University of Colorado Anschutz Medical Campus, United States
Mohammad Abid, Jamia Millia Islamia, India
Kashish Azeem, Jamia Millia Islamia, India

Copyright © 2025 Guo, Wang, Chen, Zheng, Zhang, Yan, Long, Luo, Xuan, Wang and Zheng. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Huaixin Zheng, aHVhaXhpbl96aGVuZ0B6enUuZWR1LmNu

Present addresses: Chenyang Guo, Eye Institute and Department of Ophthalmology, Eye and ENT Hospital, Fudan University, Shanghai, China
Congcong Wang, Department of Histology and Embryology, Medical School; Henan Provincial Research Center of Engineering and Technology for Medical Detection of Nuclear Protein, Zhengzhou Health College, Mazhai Town, Erqi District, Zhengzhou, Henan, China
Qihui Chen, Frontier Science Center for Immunology and Metabolism, Medical Research Institute, Wuhan University, Wuhan, China

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.