ORIGINAL RESEARCH article
Front. Microbiol.
Sec. Terrestrial Microbiology
This article is part of the Research TopicSoil Microbial Community and Function Changes Mechanism Regulated by Agricultural Soil-Borne Disease Control MeasuresView all articles
Effects of Pesticides on Soil Microbial Community Structure and Nitrogen Transformation in Tobacco Fields Affected by Root Rot
Provisionally accepted
Fengyu Li1Zhaoguo Qiu1Zhouyang Pei2Qifa Zhu2Sideng Shen2
Jie Wang3Bin Huang3*Leye Huang3Xinyu Liu3
Qingli Han1*- 1Southwest Forestry University, Kunming, China
- 2Xuancheng Modern Agricultural Industrial Park, Anhui, China
- 3Chinese Academy of Agricultural Sciences Institute of Tobacco Research, Qingdao, China
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Introduction: In tobacco planting soil infected with root rot disease, the potential impacts of prothioconazole (T1), pyrisoxazole (T2), kasugamycin combined with Paenibacillus polymyxa (T3), and cyclobutrifluram (T4) on soil microecology remain unclear. This study examined their effects on soil microbial communities and nitrogen transformation processes. Methods: By measuring soil nitrogen forms and enzyme activities, combined with metagenomic sequencing, we conducted a comprehensive assessment of the soil microecology, focusing on shifts in microbial community composition, xenobiotic degradation potential, and nitrogen cycling processes. Results and Discussion: The results revealed that pesticide application significantly changed the content of nitrogen forms and their transformation rate. T1 and T2 treatments significantly increased the accumulation of ammonium nitrogen (NH₄⁺-N), while T2 and T4 markedly promoted the accumulation of nitrate nitrogen (NO₃⁻-N). Microbial community analysis indicated that the T2 and T4 treatments significantly affected the microbial structure. Analysis of xenobiotic degradation pathways showed that multiple pathways were suppressed by the four pesticide treatments, with the T2 treatment exhibiting the broadest suppressive effect. Metagenomic analysis further revealed that the T2 treatment promoted the accumulation of both NH₄⁺-N and NO₃⁻-N by up-regulating the mineralization gene (gdh) and nitrification genes (hao and nxrAB), while the T4 treatment facilitated NO₃⁻-N accumulation by up-regulating nitrification genes (hao and nxrAB). Correlation network analysis uncovered relationships between key nitrogen cycle genes and microbial genera, showing that nitrification genes (hao and nxrAB) in the T2 and T4 treatment groups exhibited positive correlations with Nitrobacter and Nitrosovibrio. This research clarifies the pathways through which these four pesticides influence the soil nitrogen cycle, providing an important theoretical basis for their ecological risk assessment and rational application.
Keywords: Pesticides, microbial community, xenobiotic degradation, Nitrogen cycle gene, Co-occurrence network patterns
Received: 28 Oct 2025; Accepted: 28 Nov 2025.
Copyright: © 2025 Li, Qiu, Pei, Zhu, Shen, Wang, Huang, Huang, Liu and Han. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
* Correspondence:
Bin Huang
Qingli Han
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