Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 05 Oct 2023

Identification of rare microbial colonizers of plastic materials incubated in a coral reef environment

in Systems Microbiology

Sebastian L. Singleton
Edward W. Davis
Holly K. Arnold
An Mei Y. Daniels
Susanne M. Brander
Rachel J. Parsons
Thomas J. Sharpton
Stephen J. Giovannoni

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1259014

5,306 views
9 citations

Mini Review

Published on 05 Oct 2023

Overview of data preprocessing for machine learning applications in human microbiome research

in Systems Microbiology

Eliana Ibrahimi
Marta B. Lopes
Xhilda Dhamo
Andrea Simeon
Rajesh Shigdel
Karel Hron
Blaž Stres
Domenica D’Elia
Magali Berland
Laura Judith Marcos-Zambrano

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1250909

8,239 views
20 citations

Methods

Published on 03 Oct 2023

Culturing the Plastisphere: comparing methods to isolate culturable bacteria colonising microplastics

in Systems Microbiology

Emily M. Stevenson
Angus Buckling
Matthew Cole
Penelope K. Lindeque
Aimee K. Murray

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1259287

9,324 views
15 citations

Original Research

Published on 29 Sep 2023

Long-term impacts of conservation pasture management in manuresheds on system-level microbiome and antibiotic resistance genes

in Systems Microbiology

Mitiku Mihiret Seyoum
Amanda J. Ashworth
Kristina M. Feye
Steven C. Ricke
Phillip R. Owens
Philip A. Moore
Mary Savin

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1227006

4,404 views
3 citations

Original Research

Published on 28 Sep 2023

Application of multi-omic features clustering and pathway enrichment to clarify the impact of vitamin B2 supplementation on broiler caeca microbiome

in Systems Microbiology

Carlo Mengucci
Simone Rampelli
Gianfranco Picone
Alex Lucchi
Gilberto Litta
Elena Biagi
Marco Candela
Gerardo Manfreda
Patrizia Brigidi
Francesco Capozzi

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1264361

2,104 views
1 citation

Correction

Published on 27 Sep 2023

Corrigendum: Geminicoccus flavidas sp. nov. and Geminicoccus harenae sp. nov., two IAA-producing novel rare bacterial species inhabiting desert biological soil crusts

in Systems Microbiology

Zhu-Ming Jiang
Yang Deng
Xue-Fei Han
Jing Su
Hao Wang
Li-Yan Yu
Yu-Qin Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1285950

1,277 views
1 citation

Original Research

Published on 27 Sep 2023

Machine learning strategy for identifying altered gut microbiomes for diagnostic screening in myasthenia gravis

in Systems Microbiology

Che-Cheng Chang
Tzu-Chi Liu
Chi-Jie Lu
Hou-Chang Chiu
Wei-Ning Lin

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1227300

3,837 views
6 citations

Review

Published on 26 Sep 2023

Gut macrobiotic and its metabolic pathways modulate cardiovascular disease

in Systems Microbiology

Junwen Zhu
Jin Lyu
Ruochi Zhao
Gang Liu
Shuangshuang Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1272479

6,037 views
10 citations

Review

Published on 22 Sep 2023

Machine learning approaches in microbiome research: challenges and best practices

in Systems Microbiology

Georgios Papoutsoglou
Sonia Tarazona
Marta B. Lopes
Thomas Klammsteiner
Eliana Ibrahimi
Julia Eckenberger
Pierfrancesco Novielli
Alberto Tonda
Andrea Simeon
Rajesh Shigdel

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1261889

16,484 views
62 citations

Editorial

Published on 19 Sep 2023

Editorial: Soil microbe-arthropod interactions under global change

in Systems Microbiology

Rentao Liu
Bing Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1280103

1,569 views

Original Research

Published on 18 Sep 2023

Dissecting the association between gut microbiota and liver cancer in European and East Asian populations using Mendelian randomization analysis

in Systems Microbiology

Hua Jiang
Tianjun Song
Zhongyi Li
Lingxuan An
Chiyi He
Kai Zheng

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1255650

5,723 views
8 citations

Original Research

Published on 18 Sep 2023

Predicting potential microbe-disease associations with graph attention autoencoder, positive-unlabeled learning, and deep neural network

in Systems Microbiology

Lihong Peng
Liangliang Huang
Geng Tian
Yan Wu
Guang Li
Jianying Cao
Peng Wang
Zejun Li
Lian Duan

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1244527

3,129 views
9 citations

Original Research

Published on 14 Sep 2023

Causality of anti-Helicobacter pylori IgG levels on myocardial infarction and potential pathogenesis: a Mendelian randomization study

in Systems Microbiology

Qiubo Wang
Yingbo Liu
Zhenxing Xu
Zhimiao Wang
Mei Xue
Xinran Li
Ye Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1259579

4,861 views
7 citations

Mini Review

Published on 25 Aug 2023

Role of the gut microbiota in hematologic cancer

in Systems Microbiology

Patricia Guevara-Ramírez
Santiago Cadena-Ullauri
Elius Paz-Cruz
Rafael Tamayo-Trujillo
Viviana A. Ruiz-Pozo
Ana Karina Zambrano

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1185787

8,034 views
27 citations

Original Research

Published on 24 Aug 2023

2bRAD-M reveals the difference in microbial distribution between cancerous and benign ovarian tissues

in Systems Microbiology

Xiaogang Wang
Yaojun Zheng
Xiang Chen
Chen Peng
Shizhen Zhou
Sunan Shen
Shuli Zhao
Tingting Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1231354

3,919 views
5 citations

Original Research

Published on 22 Aug 2023

A new integrated framework for the identification of potential virus–drug associations

in Systems Microbiology

Jia Qu
Zihao Song
Xiaolong Cheng
Zhibin Jiang
Jie Zhou

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1179414

2,555 views
7 citations