Frontiers in Microbiology | Systems Microbiology

Original Research

Published on 12 Mar 2024

Super resolution-based methodology for self-supervised segmentation of microscopy images

in Systems Microbiology

Vidya Bommanapally
Dilanga Abeyrathna
Parvathi Chundi
Mahadevan Subramaniam

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1255850

1,803 views
1 citation

Original Research

Published on 11 Mar 2024

Shotgun metagenomics reveals the gut microbial diversity and functions in Vespa mandarinia (Hymenoptera: Vespidae) at multiple life stages

in Systems Microbiology

Peng-Kai Yin
Huai Xiao
Zhi-Bin Yang
Da-Song Yang
Yin-He Yang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1288051

3,169 views
4 citations

Original Research

Published on 06 Mar 2024

The proteome of bacterial membrane vesicles in Escherichia coli—a time course comparison study in two different media

in Systems Microbiology

Mia S. C. Yu
Dapi Menglin Chiang
Marlene Reithmair
Agnes Meidert
Florian Brandes
Gustav Schelling
Christina Ludwig
Chen Meng
Benedikt Kirchner
Christian Zenner

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1361270

4,066 views
4 citations

Review

Published on 05 Mar 2024

Role of the gut microbiota in the pathogenesis of endometriosis: a review

in Systems Microbiology

Cuishan Guo
Chiyuan Zhang

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1363455

14,525 views
12 citations

Review

Published on 05 Mar 2024

Metabolites: a converging node of host and microbe to explain meta-organism

in Systems Microbiology

Nabarun Chakraborty

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1337368

2,654 views
7 citations

Original Research

Published on 05 Mar 2024

Metagenomic evidence for antibiotic-associated actinomycetes in the Karamay Gobi region

in Systems Microbiology

Shuai Yang
Wei Zhang
Bo Yang
Xin Feng
Yiyang Li
Xiaolin Li
Qin Liu

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1330880

2,519 views
4 citations

Original Research

Published on 01 Mar 2024

An optimized culturomics strategy for isolation of human milk microbiota

in Systems Microbiology

Fan Wang
Lingmin Yu
Yuting Ren
Qianwen Zhang
Shanshan He
Minlei Zhao
Zhili He
Qi Gao
Jianguo Chen

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1272062

3,833 views
10 citations

Methods

Published on 27 Feb 2024

A simple protocol for cultivating the bacterivorous soil nematode Caenorhabditis elegans in its natural ecology in the laboratory

in Systems Microbiology

Rocel Amor Indong
Jong Min Park
Jin-Kyung Hong
Eun Sun Lyou
Taeman Han
Jong Kwang Hong
Tae Kwon Lee
Jin I. Lee

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1347797

3,897 views
1 citation

Original Research

Published on 21 Feb 2024

The bacterial and archaeal communities of flies, manure, lagoons, and troughs at a working dairy

in Systems Microbiology

Tawni L. Crippen
Dongmin Kim
Toni L. Poole
Sonja L. Swiger
Robin C. Anderson

Frontiers in Microbiology

doi 10.3389/fmicb.2023.1327841

3,652 views
4 citations

Original Research

Published on 20 Feb 2024

High-throughput screening of the effects of 90 xenobiotics on the simplified human gut microbiota model (SIHUMIx): a metaproteomic and metabolomic study

in Systems Microbiology

Victor Castañeda-Monsalve
Laura-Fabienne Fröhlich
Sven-Bastiaan Haange
Masun Nabhan Homsi
Ulrike Rolle-Kampczyk
Qiuguo Fu
Martin von Bergen
Nico Jehmlich

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1349367

5,997 views
9 citations

Original Research

Published on 15 Feb 2024

Explainable artificial intelligence for microbiome data analysis in colorectal cancer biomarker identification

in Systems Microbiology

Pierfrancesco Novielli
Donato Romano
Michele Magarelli
Pierpaolo Di Bitonto
Domenico Diacono
Annalisa Chiatante
Giuseppe Lopalco
Daniele Sabella
Vincenzo Venerito
Pasquale Filannino

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1348974

8,143 views
24 citations

Original Research

Published on 15 Feb 2024

Investigating causal associations among gut microbiota, metabolites, and psoriatic arthritis: a Mendelian randomization study

in Systems Microbiology

Xiao Xu
Lin-yun Wu
Shu-yun Wang
Min Yan
Yuan-Hong Wang
Li Li
Zhi-ling Sun
Ji-Xiang Zhao

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1287637

6,054 views
2 citations

Original Research

Published on 14 Feb 2024

Discovery of novel replication proteins for large plasmids in cyanobacteria and their potential applications in genetic engineering

in Systems Microbiology

Kazuma Ohdate
Minori Sakata
Kaisei Maeda
Yutaka Sakamaki
Kaori Nimura-Matsune
Ryudo Ohbayashi
Wolfgang R. Hess
Satoru Watanabe

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1311290

3,933 views
5 citations

Methods

Published on 12 Feb 2024

Unraveling the microbiome-metabolome nexus: a comprehensive study protocol for personalized management of Behçet’s disease using explainable artificial intelligence

in Systems Microbiology

Sabina Tangaro
Giuseppe Lopalco
Daniele Sabella
Vincenzo Venerito
Pierfrancesco Novielli
Donato Romano
Alessia Di Gilio
Jolanda Palmisani
Gianluigi de Gennaro
Pasquale Filannino

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1341152

2,157 views
2 citations

Original Research

Published on 09 Feb 2024

Effects of type of substrate and dilution rate on fermentation in serial rumen mixed cultures

in Systems Microbiology

Emilio M. Ungerfeld
Nathaly Cancino-Padilla
Nelson Vera-Aguilera
M. Carolina Scorcione
Marcelo Saldivia
Lorena Lagos-Pailla
Milena Vera
Cristián Cerda
Camila Muñoz
Natalie Urrutia

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1356966

2,766 views
1 citation

Editorial

Published on 09 Feb 2024

Editorial: Risk assessment of mycotoxins on metabolism, immunity, and intestinal health

in Systems Microbiology

Einar Ringø
Xiaoyum He
Xiao Li Shen
Jing Jin
Fuguo Xing

Frontiers in Microbiology

doi 10.3389/fmicb.2024.1367261

1,336 views
1 citation