Frontiers in Microbiomes | Environmental Microbiomes

Original Research

Accepted on 18 Dec 2025

Community assembly following disturbance in batch anaerobic digesters displays highly reproducible secondary succession and a shifting stochastic-deterministic balance

in Environmental Microbiomes

Flor de María Guerrero-Toledo
Teodoro Espinosa-Solares
Guadalupe Hernández-Eugenio
David H. Huber

Frontiers in Microbiomes

Perspective

Accepted on 02 Dec 2025

Multilevel selection theory informs context-dependent mycorrhizal functioning

in Environmental Microbiomes

Anne M. Katula
Nancy Collins Johnson
V. Bala Chaudhary
Michelle E. Afkhami

Frontiers in Microbiomes

153 views

Original Research

Published on 28 Nov 2025

Identification of microbial communities associated with Phymatotrichopsis omnivora sclerotia in two Texas fields

in Environmental Microbiomes

Maxwell Sturdivant
Sanjay Antony-Babu
Elizabeth Pierson
Thomas M. Chappell
Thomas Isakeit

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1666691

490 views

Brief Research Report

Published on 25 Nov 2025

Corrosion inhibition of an aluminum alloy by environmentally derived microbial biofilms

in Environmental Microbiomes

Zachary T. Burton
Han Liu
Nathan Stumme
Scott K. Shaw
Steven Harris
Simon Laflamme
Kaoru Ikuma

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1675064

659 views

Original Research

Published on 17 Nov 2025

Integrated omics analysis of PGPR and AMF effects on soil microbiota and root metabolites in Isatis indigotica

in Environmental Microbiomes

Shuai Yang
Ting Yuan
Tingting Duan
Huimin Zhu
Xiaoxia Zhang
Haihong Zhang
Junjie Jiang
Jun Yang
Lichuan Hu
Yu Yu

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1709335

839 views

Original Research

Published on 17 Oct 2025

The EDEN ISS mobile test facility microbiome changes by cleaning and continued use

in Environmental Microbiomes

Luis Gaiser
Kristina Beblo-Vranesevic
Rob Van Houdt
Jana Fahrion
Louise Gillet de Chalonge
Jess M. Bunchek
Paul Zabel
Daniel Schubert
Petra Rettberg

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1608732

1,159 views

Original Research

Published on 08 Oct 2025

Serial nitrogen-phosphate co-limitation controls the primary productivity in the transitional waters of northern South China Sea and the Pearl River Estuary

in Environmental Microbiomes

Yuanhao Liu
Xunying Zhou
Ruoyu Niu
Rongman Yan
Shuaishuai Xu
Kangli Guo
Jing Guo
Jianchang Tao
Sha Wu
Shengwei Hou

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1655960

1,117 views

Original Research

Published on 26 Sep 2025

Diverse cultivation strategies are necessary to capture microbial diversity in High Arctic lake sediment

in Environmental Microbiomes

Brittany M. Berdy
Claire E. Williams
Maria Sizova
Dawoon Jung
Nil Tandogan
Edgar D. Goluch
Slava Epstein

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1619859

7,337 views

Original Research

Published on 26 Sep 2025

Olivine and dissolved alkalinity trigger different bacterial community shifts in water and oyster gills: insights from a mesocosm experiment

in Environmental Microbiomes

Dominik Antoni
Marco Rump
Gunnar Gerdts

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1659695

1,746 views

Original Research

Published on 18 Sep 2025

Investigating impacts from topsoil stockpile height on soil microbial communities

in Environmental Microbiomes

Ashley Fischer
Jay P. Singh
Jonathan Van Hamme
Eric Bottos
Lauchlan H. Fraser

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1607677

997 views

Original Research

Published on 15 Aug 2025

Effects of biopolymers, cork, and Rhizobium tropici-derived extracellular polymeric substances on soil microbial communities

in Environmental Microbiomes

Alexis K. Craft
Sowndarya Karapareddy
Varsha C. Anche
Madhusudhana R. Janga
Obaloluwa Soyinka
Sravan K. Sanathanam
Seloame T. Nyaku
Govind C. Sharma
Zachary Senwo
Venkateswara R. Sripathi

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1614472

1,690 views

Original Research

Published on 11 Aug 2025

The effect of ocean alkalinity enhancement on pelagic bacterial communities: focus points derived from a mesocosm experiment

in Environmental Microbiomes

Dominik Antoni
Antje Wichels
Maarten Boersma
Gunnar Gerdts

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1606890

1,832 views
1 citation

Editorial

Published on 18 Jul 2025

Editorial: Defining a healthy microbiome

in Environmental Microbiomes

Blaž Stres

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1652331

921 views

Editorial

Published on 07 May 2025

Editorial: Interactions between natural and built environment microbiomes in a One Health context

in Environmental Microbiomes

Weitao Shuai
Bridget Hegarty
Alexander Mahnert
Erica Marie Hartmann

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1608228

1,348 views

Original Research

Published on 30 Apr 2025

Farm conditions shape microbial communities and their association with methane intensity in dairy cattle: insights from the rumen microbiome at the community level

in Environmental Microbiomes

Simon Roques
Lisanne Koning
Alex Bossers
Sanne van Gastelen
Dirkjan Schokker
Edoardo Zaccaria
Léon Šebek
Soumya K. Kar

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1540197

1,628 views

Editorial

Published on 24 Apr 2025

Editorial: Ecology, evolution, and biodiversity of microbiomes and viromes from extreme environments

in Environmental Microbiomes

Gareth Trubl
Lucie Malard
Janina Rahlff

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1604002

1,547 views

Original Research

Published on 09 Apr 2025

Effects of wetting events on mass timber surface microbial communities and VOC emissions: implications for building operation and occupant well-being

in Environmental Microbiomes

Gwynne Á. Mhuireach
Susan Collins
Leslie Dietz
Patrick Finn Horve
Aurélie Laguerre
Dale Northcutt
Jason Stenson
Kevin Van Den Wymelenberg
Elliott Gall
Mark Fretz

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1395519

3,469 views

Original Research

Published on 07 Feb 2025

Microbial partner (MiPner) analysis

in Environmental Microbiomes

Jeffrey L. Bennetzen
Josue Fernandez-Canela
Vienna Elmgreen
Shaugnessy R. McCann
Mary E. Norris
Xiangyu Deng
Philip Brailey-Crane

Frontiers in Microbiomes

doi 10.3389/frmbi.2024.1500798

1,363 views

Original Research

Published on 06 Feb 2025

Biochar and straw amendments drive microbial regulation of phosphorus dynamics in saline-irrigated cotton fields

in Environmental Microbiomes

Yang Ye
Xiaowen Guo
Yueyao Li
Wei Min
Huijuan Guo

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1508717

1,737 views
2 citations

Original Research

Published on 31 Jan 2025

Soil microbiome composition is highly responsive to precipitation and plant composition manipulations in a field biodiversity experiment

in Environmental Microbiomes

Haley M. Burrill
Susan M. Magnoli
James D. Bever

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1460319

2,953 views
2 citations

Editorial

Published on 24 Jan 2025

Editorial: Women in environmental microbiomes

in Environmental Microbiomes

Rebecca C. Mueller
Catherine A. Gehring

Frontiers in Microbiomes

doi 10.3389/frmbi.2025.1537069

1,555 views

Original Research

Published on 20 Jan 2025

Microbial community differentiation in vent chimneys of the Lost City Hydrothermal Field reflects habitat heterogeneity

in Environmental Microbiomes

Osama M. Alian
William J. Brazelton
Karmina A. Aquino
Katrina I. Twing
H. Lizethe Pendleton
Gretchen Früh-Green
Susan Q. Lang
Matthew O. Schrenk

Frontiers in Microbiomes

doi 10.3389/frmbi.2024.1401831

2,656 views

Systematic Review

Published on 17 Jan 2025

Quantifying conjugation rates in clinical and environmental matrices: a systematic review to inform risk assessment

in Environmental Microbiomes

Hunter Quon
Lucia Ramirez
Blakeley Bagwell
Jennifer Moralez
Richard J. Sheppard
Allison J. Lopatkin
Kerry A. Hamilton

Frontiers in Microbiomes

doi 10.3389/frmbi.2024.1490240

3,070 views
2 citations

Original Research

Published on 13 Nov 2024

Metagenomic inference of microbial community composition and function in the weathering crust aquifer of a temperate glacier

in Environmental Microbiomes

Quincy Faber
Christina Davis
Brent Christner

Frontiers in Microbiomes

doi 10.3389/frmbi.2024.1488744

2,316 views
1 citation

56 articles

articles

Community assembly following disturbance in batch anaerobic digesters displays highly reproducible secondary succession and a shifting stochastic-deterministic balance

Multilevel selection theory informs context-dependent mycorrhizal functioning

Identification of microbial communities associated with Phymatotrichopsis omnivora sclerotia in two Texas fields

Corrosion inhibition of an aluminum alloy by environmentally derived microbial biofilms

Integrated omics analysis of PGPR and AMF effects on soil microbiota and root metabolites in Isatis indigotica

The EDEN ISS mobile test facility microbiome changes by cleaning and continued use

Serial nitrogen-phosphate co-limitation controls the primary productivity in the transitional waters of northern South China Sea and the Pearl River Estuary

Diverse cultivation strategies are necessary to capture microbial diversity in High Arctic lake sediment

Olivine and dissolved alkalinity trigger different bacterial community shifts in water and oyster gills: insights from a mesocosm experiment

Investigating impacts from topsoil stockpile height on soil microbial communities

Effects of biopolymers, cork, and Rhizobium tropici-derived extracellular polymeric substances on soil microbial communities

The effect of ocean alkalinity enhancement on pelagic bacterial communities: focus points derived from a mesocosm experiment

Editorial: Defining a healthy microbiome

Editorial: Interactions between natural and built environment microbiomes in a One Health context

Farm conditions shape microbial communities and their association with methane intensity in dairy cattle: insights from the rumen microbiome at the community level

Editorial: Ecology, evolution, and biodiversity of microbiomes and viromes from extreme environments

Effects of wetting events on mass timber surface microbial communities and VOC emissions: implications for building operation and occupant well-being

Microbial partner (MiPner) analysis

Biochar and straw amendments drive microbial regulation of phosphorus dynamics in saline-irrigated cotton fields

Soil microbiome composition is highly responsive to precipitation and plant composition manipulations in a field biodiversity experiment

Editorial: Women in environmental microbiomes

Microbial community differentiation in vent chimneys of the Lost City Hydrothermal Field reflects habitat heterogeneity

Quantifying conjugation rates in clinical and environmental matrices: a systematic review to inform risk assessment

Metagenomic inference of microbial community composition and function in the weathering crust aquifer of a temperate glacier