TECHNOLOGY AND CODE
Published on 04 Sep 2025
Protein cleaver: an interactive web interface for in silico prediction and systematic annotation of protein digestion-derived peptides
doi 10.3389/fbinf.2025.1576317
- 3,345 views
- Frontiers in Bioinformatics
- Protein Bioinformatics
- Research Topics
- Methods, Tools and Algorithms in Protein Bioinformatics
Methods, Tools and Algorithms in Protein Bioinformatics
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Articles
ORIGINAL RESEARCH
Published on 18 Jul 2025
IDRdecoder: a machine learning approach for rational drug discovery toward intrinsically disordered regions
doi 10.3389/fbinf.2025.1627836
- 2,476 views
ORIGINAL RESEARCH
Published on 14 Apr 2025
Using AlphaFold-Multimer to study novel protein-protein interactions of predation essential hypothetical proteins in Bdellovibrio
doi 10.3389/fbinf.2025.1566486
- 5,775 views
- 5 citations
METHODS
Published on 26 Jan 2024
AlignScape, displaying sequence similarity using self-organizing maps
doi 10.3389/fbinf.2024.1321508
- 2,991 views
METHODS
Published on 13 Dec 2023
Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-)orthologs
doi 10.3389/fbinf.2023.1322477
- 2,826 views
- 36 citations
METHODS
Published on 17 Oct 2023
Protein quality assessment with a loss function designed for high-quality decoys
doi 10.3389/fbinf.2023.1198218
- 2,735 views
- 4 citations
ORIGINAL RESEARCH
Published on 20 Jun 2023
Large-scale data mining pipeline for identifying novel soybean genes involved in resistance against the soybean cyst nematode
doi 10.3389/fbinf.2023.1199675
- 2,301 views
- 3 citations
ORIGINAL RESEARCH
Published on 26 Sep 2022
Improving peptide-protein docking with AlphaFold-Multimer using forced sampling
doi 10.3389/fbinf.2022.959160
- 30,637 views
- 146 citations
ORIGINAL RESEARCH
Published on 02 Dec 2021
BRANEart: Identify Stability Strength and Weakness Regions in Membrane Proteins
doi 10.3389/fbinf.2021.742843
- 3,131 views
- 6 citations
ORIGINAL RESEARCH
Published on 24 Jun 2021
CoeViz 2: Protein Graphs Derived From Amino Acid Covariance
doi 10.3389/fbinf.2021.653681
- 7,541 views
- 8 citations
METHODS
Published on 13 Apr 2021
Deriving and Using Descriptors of Elementary Functions in Rational Protein Design
doi 10.3389/fbinf.2021.657529
- 4,189 views
- 5 citations
ORIGINAL RESEARCH
Published on 09 Apr 2021
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins
doi 10.3389/fbinf.2021.646581
- 5,881 views
- 15 citations
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