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Front. Microbiol., 29 January 2019
Sec. Food Microbiology

Effect of Fortified Daqu on the Microbial Community and Flavor in Chinese Strong-Flavor Liquor Brewing Process

Guiqiang He1,2, Jun Huang1,2, Rongqing Zhou1,2,3*, Chongde Wu1,2 and Yao Jin1,2
  • 1College of Light Industry, Textile and Food Engineering, Sichuan University, Chengdu, China
  • 2Key Laboratory of Leather Chemistry and Engineering, Ministry of Education, Sichuan University, Chengdu, China
  • 3National Engineering Research Center of Solid-State Manufacturing, Luzhou, China

Daqu, an important fermentation starter for the production of Chinese liquor, as used in the current study included traditional Daqu and fortified Daqu inoculated with Bacillus velezensis and Bacillus subtilis. To evaluate the effect of fortified Daqu on strong-flavor liquor production, the differences of microbial communities among three inoculation patterns of fermented grains (FG) were analyzed by the Illumina MiSeq platform. A higher relative abundance of dominant genera including Bacillus, Lactococcus, Aspergillus, and Candida, and lower relative abundance of Lactobacillus, were observed in FG50, in which mixed Daqu (traditional: fortified Daqu = 1: 1, w/w, 50% fortified Daqu) was used as the starter. Then, volatile compounds of their distillations were also examined by HS-SPME-GC-MS. The results showed that the contents of skeleton flavor components, mainly including important esters and aromatic compounds, were higher in the corresponding liquor L50, which distillated from FG50. Moreover, most esters mainly positively correlated with Lactobacillus and Candida in the bottom layer of FG fermented with 50% fortified Daqu (FG50-B). Aromatic compounds were strongly positively correlated with Bacillus and Aspergillus in the middle layer of FG with 50% fortified Daqu used (FG50-M). In particular, hexyl hexanoate showed a positive correlation with higher abundances of Ruminococcus in the FG with addition of 100% fortified Daqu (FG100). This study observed microbial compositions in the FG with fortified Daqu addition, and it further revealed the correlations between pivotal microbes and main flavor compounds. These results may help to develop effective strategies to regulate microbes for the brewing process and further improve the flavors of Chinese liquor.


Strong-flavor liquor, also called Luzhou-flavor baijiu, is the most famous Chinese liquor and has a long history (Zheng and Han, 2016; Jin et al., 2017). The annual output accounts for more than 70% of Chinese liquor as a result of its unique flavor and aroma. Strong-flavor liquor is brewed by solid-state fermentation, in which Daqu manufacture and grain fermentation is mainly involved (Xu et al., 2017). Daqu, as both an important fermenting starter and specialized raw materials, is critical for the quality of Chinese liquor (Gou et al., 2015). As is commonly known, the crude enzyme preparations and various microbes in Daqu are necessary for macromolecular hydrolysis and metabolism. Additionally, it contributes a large number of flavor compounds and precursors, as well as beneficial metabolites to the liquor brewing.

In general, Daqu was manufactured by spontaneous fermentation in an open environment. The production patterns include both simple artisanal scale and large-scale industrial processes. Until now, no matter what pattern, the production of traditional Daqu has mainly depended on the regulation of process parameters by skilled technicians, and the microbes mainly come from the non-sterile raw materials and the ambient environment. Therefore, the manufacture process is neither predictable nor controllable, which causes the unstable quality of the liquor.

In the last two decades, the microbial communities in different types of Daqu, such as Jiang-, Nong-, and Qing-xiang type, have been characterized gradually by traditional and molecular methods. For example, lactic acid bacteria were dominant in all types of Daqu, whereas Bacillus were predominant in Nong- and Jiang-xiang Daqu (Zhang L. et al., 2014). The fungi Saccharomycopsis fibuligera and Lichtheimia ramosa dominated in Qing- and Nong-xiang Daqu, while Thermomyces lanuginosus occurred in Jiang-xiang Daqu (Zheng et al., 2015). The differences of microbial communities between different types of Daqu are also related to the environmental conditions. For instance, moisture and acidity stresses resulted in a transition of microbial structure at thermophilic stages (Pan et al., 2016). The temperature in the Daqu manufacturing process is also an important factor in the composition of microbial communities (Huang et al., 2017; Xiao et al., 2017).

These results laid an important foundation for regulating the microbial community and their metabolisms in Daqu production. The microbial regulations based on inoculating functional strain or microflora have been applied to Daqu manufacturing, grain fermentation, and artificial pit mud culture (Guo et al., 2017; Sun et al., 2017; Wang P. et al., 2017). For example, Bacillus licheniformis and Bacillus subtilis have been applied to enhance the contents of organic acids in Chinese liquor (Yan et al., 2013a). A previous study showed that the microbiota’s dynamic stability was reinforced when Bacillus, Pediococcus, Wickerhamomyces, and Saccharomycopsis were inoculated to Daqu manufacture (Li P. et al., 2017). As for fermented grain, the diversity of bacterial community and the total ester content significantly increased by inoculating cellulase-producing bacteria (Guo et al., 2017, 2018). Clostridium, as one of the hexanoic acid productors, is a dominant bacteria in the aged-pit, and often inoculated into the new or young cellar to enhance the content of hexanoic acid (Zou et al., 2018).

However, it is still unclear how the microbiota of Daqu influences on the liquor brewing process. Thus, it is of urgent need to explore the effects of fortified Daqu and functional flora on the brewing process which, in turn, will help to improve the liquor quality by bioaugmentation. In this research, we attempted to provide insight into the composition of microbial communities presented in three fermented grains (FG) whereby traditional, mixed, and fortified Daqu were used as starter, respectively. Redundancy analysis (RDA) was applied to improve the understanding of the correlations between functional microbiota and the main flavor compounds of liquor.

Materials and Methods

Daqu Manufacture and Grain Fermentation

The fortified Daqu inoculated with Bacillus velezensis and Bacillus subtilis was manufactured by Xufu Brewery Co., Ltd (Yibin, China). B. velezensis and B. subtilis were isolated from Daqu originated from two breweries, both of which were endowed with protection owing to intangible cultural heritage. The manufacture process of Daqu mainly involved three procedures according to the method described previously (Zheng et al., 2012), as shown in Figure 1. First, crushed wheats were mixed with water, in which the mixture suspension with B. velezensis: B. subtilis at a ratio of 106: 106 cells/mL was contained, and then were pressed to shape a cuboid brick (Daqu bricks). Subsequently, the bricks were placed into a special room (called a Qu Fang), and cultured about 20 days according to the enterprise operation specifications. The incubation temperature of Daqu needs to be controlled according to the following procedure. (i) In the low-temperature incubation period, microbiota begin to grow and the temperature gradually increases, achieving 30–40°C in 2–3 days. (ii) In the high-temperature incubation period, the temperature increases by 5–8°C/day to a maximum of 55–62°C. In this phase, the relative humidity of Qu Fang is up to 90%, and doors and windows are properly opened to ventilate and lower the humidity. (iii) In the aroma-creating period, the temperature and relative humidity slowly decrease, and the aroma compounds are accumulated by the metabolic conversion. Lastly, Daqu were piled up to another Qu Fang, and stored more than 3 months to maturation. Daqu manufactured in the same batch without inoculation was used as control (traditional Daqu).


Figure 1. Manufacture process of fortified Daqu.

The grain fermentation (liquor brewing) was carried out according to the process shown in Figure 2A. Briefly, the steamed grains were cooled to below 40°C, mixed with 20% (based on the quantity of grain) of Daqu, then put into mud pits, and fermented for 2 months anaerobically. In the present experiment, the fermentation starters used were traditional, mixed, and fortified Daqu, respectively, and the mixed Daqu was composed of 50% traditional Daqu and 50% fortified Daqu. Therefore, the corresponding FG obtained after fermentation were referred to as FG0, FG50, and FG100, respectively.


Figure 2. Schematic diagram of brewing process for Chinese strong-flavor liquor (A) and sampling method (B). Different proportions (0, 50, and 100%) of fortified Daqu were mixed with steamed grains, and the corresponding fermented grains (FG) and liquors were obtained. Every FG sample ( was collected from seven different positions (100 g FG at each position), and mixed well as one sample.

Sample Collection and Flavor Analysis

The samples were collected on 21 November 2017 according to the pattern shown in Figure 2B. For each mud pit, seven positions (100 g/each sample position) were taken from FG in the middle and bottom layer, respectively. These seven positions were mixed uniformly, taken 200 g as one sample, transferred to sterile polyethylene bags, and then stored at −20°C until further analysis. These samples were numbered as FG0-M, FG50-M, and FG100-M (middle layer samples), and FG0-B, FG50-B, and FG100-B (bottom layer samples), respectively. The corresponding fresh liquors distillated from these FG were also numbered L0-M, L50-M, L100-M, L0-B, L50-B, and L100-B, respectively. These six liquor samples were collected from the head, heart, and tail stages during distillation. For each liquor sample, five key points (100 mL/each point) were selected to sample at equal time intervals. About 500 mL was collected, pooled together, and immediately poured into glass bottles, then sealed and stored at 4°C until analysis. Extraction and determination of volatile compounds of the six liquor samples were done by headspace solid-phase microextraction (HS-SPME) and gas chromatography-mass spectrometry (GC-MS) according to the method described previously (Ding et al., 2017). Analysis of volatile compounds were conducted in triplicate and the results were expressed as mean ± standard deviation.

DNA Extraction, PCR Amplification, and Sequence Analysis

Total bacterial genomic DNA samples were extracted using the Fast DNA SPIN extraction kits (MP Biomedicals, Santa Ana, CA, United States), following the manufacturer’s instructions, and stored at −20°C prior to further analysis. The quantity and quality of extracted DNA were measured using a NanoDrop ND-1000 spectrophotometer (Thermo Fisher Scientific, Waltham, MA, United States) and agarose gel electrophoresis, respectively. For bacteria, the V3-V4 domains of the 16S rRNA genes were amplified using primers 338F (5′-ACTCCTACGGGAGGCAGCA-3′) and 806R (5′-GGACTACHVGGGTWTCTAAT-3′). For fungi, the internal transcribed spacer ITS regions were amplified with primers ITS5 (5′-GGAAGTAAAAGTCGTAACAAGG-3′) and ITS1 (5′-GCTGCGTTCTTCATCGATGC-3′). Sample-specific 7-bp barcodes were incorporated into the primers for multiplex sequencing. The detailed PCR procedures were conducted according to a previous method (Li X. et al., 2014). PCR amplicons were purified with Agencourt AMPure Beads (Beckman Coulter, Indianapolis, IN) and quantified using the PicoGreen dsDNA Assay Kit (Invitrogen, Carlsbad, CA, United States). After the individual quantification step, amplicons were pooled in equal amounts, and pair-end 2 × 300 bp sequencing was performed using the Illumina MiSeq platform with MiSeq Reagent Kit v3 at Shanghai Personal Biotechnology Co., Ltd (Shanghai, China).

The Quantitative Insights Into Microbial Ecology (QIIME, v1.8.0) pipeline was employed to process the sequencing data as previously described (Caporaso et al., 2010). Briefly, raw sequencing reads with exact matches to the barcodes were assigned to respective samples and identified as valid sequences. The low-quality sequences (length below 150 bp, average Phred scores less than 20, mononucleotide repeats over 8 bp, and with ambiguous bases) were removed (Gill et al., 2006; Chen and Jiang, 2014). After chimera detection, the remaining high-quality sequences were clustered into operational taxonomic units (OTUs) at 97% sequence identity by UCLUST (Edgar, 2010). A representative sequence was selected from each OTU using default parameters. OTU taxonomic classification was conducted by BLAST searching the representative sequences set against the Greengenes Database (Desantis et al., 2006). An OTU table was further generated to record the abundance of each OTU in each sample and the taxonomy of these OTUs.

Statistical Analysis

One-way analysis of variance (ANOVA) was carried out to evaluate significant differences (p < 0.05) in volatile compounds using SPSS 19.0 software (SPSS Inc. Chicago, IL, United States). Principal component analysis (PCA) was also conducted with SPSS 19.0 software. Sequence data analyses were mainly performed using QIIME (v1.8.0) and R packages (v3.2.0). OTU-level alpha diversity indices including Chao1 and ACE, were calculated using the OTU table in QIIME. Rarefaction curves were plotted via R packages. RDA between microbial community and volatile compounds was performed with Canoco 5.0 software.


Richness and Diversity of Microbial Community

An average of 31,060 and 29,020 effective tags in 16S rRNA and ITS sequences, respectively, were obtained after quality control from six samples. All the rarefaction curves based on the observed species were saturated (Figure 3), which indicated that the obtained sequenced reads were sufficient to represent the community diversity in these samples. The richness and diversity were characterized by Chao1 and Shannon, respectively, to describe the alpha-diversity of the microbial community in different samples (Table 1). For prokaryotes, the combined data showed higher microbial richness (Chao1) and diversity (Shannon) in the middle layer than that in the bottom layer from the same mud pit. It is worth noting that the richness and diversity of prokaryotes in the bottom layer increased when fortified Daqu was added. For eukaryotes, there were obvious differences in richness and diversity from different layers of FG. For FG0, Chao1 and Shannon in the bottom layer were higher than that in the middle layer, while in FG50 and FG100 the results were opposite. Interestingly, the richness and diversity of eukaryotes increased in the middle layer and decreased in the bottom layer when fortified Daqu was added.


Figure 3. Rarefaction curve analysis for six FG samples fermented with different proportions of fortified Daqu based on the observed species.


Table 1. Richness and diversity indexes of microbial community in the six FG samples.

Prokaryotic Microbial Community

A total of 7 phyla have been shared by all samples, including Firmicutes, Proteobacteria, Actinobacteria, Bacteroidetes, Acidobacteria, Chloroflexi, and Cyanobacteria (Supplementary Table S1). Among them, Firmicutes were the most abundant, which accounted for 91.4–98.6% of the total abundance, mainly including Bacillus, Carnobacterium, Enterococcus, Lactobacillus, Lactococcus, Leuconostoc, Ruminococcus, Streptococcus, Thermo- actinomyces, and Virgibacillus genera.

Only genera that were detected in all mud pits were considered as an effective genus. A total of 95 genera were detected and clearly classified. The genera with a relative abundance over 0.5% in at least one sample were further analyzed to explore the effect of fortified Daqu, as shown in Figure 4A. There was a significant difference of community abundance in different layers of FG. For the middle layer (FG0-M, FG50-M, and FG100-M), Bacillus was the most dominant genus, while Lactobacillus was the most dominant genus in the bottom layer (FG0-B, FG50-B, and FG100-B). Specifically, the relative abundance of prokaryotes significantly changed in the bottom layer when fortified Daqu was used. Compared with FG0-B, the relative abundance of Lactobacillus dramatically decreased to 69.1 and 58.3% in FG50-B and FG100-B, respectively. Meanwhile FG50-B and FG100-B exhibited a higher relative abundance of the dominant genus Bacillus (14.6 and 17.4%) and 3 special genera including Lactococcus (4.2 and 5.2%), Ochrobactrum (1.1 and 1.6%), and Carnobacterium (0.52 and 0.68%) than that in FG0-B. In the middle layer, the relative abundance of Bacillus, Bacillaceae, Lactococcus, Carnobacterium, Thermoactinomycetaceae, Leuconostoc, Streptococcus, and Thermoactinomyces increased in FG50-M and decreased in FG100-M when compared with FG0-M. However, FG100 possessed a higher abundance of Ruminococcus (FG100-M 5.7 and FG100-B 2.5%) than that in FG0 and FG50.


Figure 4. Relative abundance of prokaryotic (A) and eukaryotic (B) communities in FG at genus level.

Eukaryotic Microbial Community

6 phyla were observed in the eukaryotic community, including Ascomycota, Zygomycota, Basidiomycota, Rozellomycota, Ciliophora, and Glomeromycota (Supplementary Table S2). The most abundant phylum was Ascomycota, with relative abundance from 70.9 to 95.8% in these samples, followed by Basidiomycota (1.8% ∼ 17.6%) and Zygomycota (1.3% ∼ 5.8%).

A total of 76 genera were identified and classified in these samples by the same data processing as prokaryotes. Among these genera, 22 abundant genera (with a relative abundance over 1% in at least one sample) affiliated with three phyla were observed (Figure 4B). Among them, 14 genera (Aspergillus, Candida, Cercophora, Chaetomium, Clavispora, Geosmithia, Humicola, Morchella, Phaeomycocentrospora, Pichia, Preussia, Thermoascus, Thermomyces, and Thyronectria), 6 genera (Auricularia, Bullera, Cryptococcus, Geminibasidiu, Malassezia, and Wallemia), and 2 genera (Basidiobolus and Mortierella) belonged to Ascomycota, Basidiomycota, and Zygomycota, respectively. The dominant genera Aspergillus, Candida, Thermoascus and other eukaryotic genera displayed a significant difference in these samples. Compared with FG0, FG50-M and FG50-B exhibited higher abundances of Aspergillus (47.1%) and Candida (71.3%), respectively. In the middle layer, more genera with a relative abundance over 1% in FG50-M and FG100-M were observed. In addition, the highest abundance of Pichia (6.3%) and Thermomyces (6.2%) were obtained in FG100-B.

Analysis of Flavor Compound of Liquor

In order to assess the influences of fortified Daqu on the volatile profiles of fresh liquors, flavor compounds of liquors distillated from different FG were identified. A total of 49 flavor compounds including esters (30), acids (6), alcohols (4), ketones (4), aromatics (3), and aldehydes (2) were detected (Supplementary Table S3). Overall, significant differences of flavor compounds were observed in different liquors. As described in Figure 5A, compared with the liquor brewed without the addition of fortified Daqu (L0), a noteworthy increase in the total concentration of flavor compounds was observed in the L50 liquor (brewed with 50% fortified Daqu addition), reaching a maximum value of 1435.7 mg/L in L50-B. However, there was a slight variation in the total amount of flavor compounds between liquor L0 and liquor L100 (brewed with addition of 100% fortified Daqu). In terms of categories, the largest family of flavor compounds was esters, followed by acids, alcohols, and a small number of ketones, aromatics, and aldehydes. Likewise, the L50 liquor presented higher contents of these 6 flavor groups.


Figure 5. Concentration variation (A) and principal components analysis (B) of volatile compounds in liquors distillated from different FG. Different letters obtained by ANOVA indicate significant differences at p < 0.05 (n = 3). Each number in the atlas represents 1 compound, listed successively in Supplementary Table S3.

Further, the flavor compounds were used as variable vectors for chemometric analysis of samples to reveal the effect of fortified Daqu on liquor brewing. Two principal components (PC1 40.52 and PC2 25.90%) accounting for 66.42% of the total variance were extracted (Figure 5B). Interestingly, an obvious variation was observed by the PCA plot after the addition of fortified Daqu. Liquor L0 was mainly characterized by propyl hexanoate (No. 22), butyl hexanoate (No. 23), pentyl hexanoate (No. 25), and hexyl hexanoate (No. 27), while the flavor profile changed greatly by fortifying fermentation. Liquor L100 had higher Component 2 values than L0 and they were mainly characterized by acids including 3-methylbutanoic acid (No. 32), heptanoic acid (No. 35), and butanoic acid (No. 31). For liquor L50, L50-M and L50-B had higher Component 2 and Component 1 values, respectively, than L0, and they possessed higher contents of flavor compounds. L50-M was mainly characterized by the aromatic compounds including ethyl phenylacetate (No. 11), phenylethyl acetate (No. 12), benzeneethanol (No. 40), (2,2-diethoxyethyl)-benzene (No. 47), and benzaldehyde (No. 49). Meanwhile, L50-B was characterized by higher concentrations of important esters, including ethyl hexanoate (No. 1), ethyl heptanoate (No. 2), ethyl lactate (No. 3), ethyl octanoate (No. 4), ethyl hexadecanoate (No. 16), and isopentyl hexanoate (No. 24).

Correlation Between Microbial Community and Flavor Compound

In this study, RDA was conducted to reveal the possible relationship between microbial community and flavor compound, as shown in Figure 6. Overall, the two axes explained 86.88 and 83.57% of the variation in prokaryotic and eukaryotic community differentiation, respectively, suggesting the strong correlation between microbial community and flavor compounds. The hexanoic acid, 1-hexanol, and most esters, including ethyl hexanoate, butyl hexanoate, pentyl hexanoate, ethyl heptanoate, ethyl lactate, and isopentyl hexanoate were important compounds that strongly positively correlated with Lactobacillus in FG50-B. The aromatic compounds including benzaldehyde, 4-methylphenol, 2,4-di-ter-butyl-phenol, (2,2-diethoxyethyl)-benzene, benzeneethanol, and ethyl phenylacetate mainly correlated with community composition in FG50-M with abundant Bacillus, Ochrobactrum, Lactococcus, Virgibacillus, Ralstonia, and Thermoactinomyces. In particular, Ruminococcus was only positively correlated with hexyl hexanoate. For eukaryotes, ethyl esters (ethyl hexanoate, ethyl heptanoate, and ethyl lactate) and 1-hexanol were strongly positively correlated with Candida in FG50-B. Aspergillus, Auricularia, Basidiobolus, and Cercophora were positively correlated with aldehydes, aromatics, benzeneethanol, and ethyl phenylacetate. In addition, hexyl hexanoate was mainly positively correlated with a community composition in FG100-B with higher abundance of Thermomyces and Thermoascus.


Figure 6. Correlation of prokaryotic (A) and eukaryotic (B) communities with flavor compounds by redundancy analysis.


The brewing process of Chinese strong-flavor liquor is complicated and involves many microbes originating from Daqu and pit mud. Especially for Daqu, the contribution of microbes to fermented grain is very important. For example, Wang X. et al. (2017) found that Daqu was the main source of strict aerobes and facultative aerobes, and they took up over 74% of prokaryotic communities in fermented grain. To stabilize and improve the quality of Chinese liquor, the corresponding strategies of both fortified Daqu manufacture and artificial pit mud culture were developed. Artificial pit mud is indeed applied widely in Chinese liquor production (Ding et al., 2014; Zhang L. et al., 2015; Sun et al., 2017). Unfortunately, artificial pit mud is generally continuously used and easily aged during the fermentation process. An obvious characteristic of aged artificial pit mud is the formation of a large amount of ferrous lactate, magnesium lactate, and copper lactate (Zhang Y. et al., 2014; Sun et al., 2017), and this leads to fermentation failure.

In recent years, interest in fortified daqu for liquor making has increased in many researchers. For example, highly similar dynamics of physicochemical parameters, enzymatic activities, and microbial communities were observed during the traditional and fortified Daqu fermentation processes (Li P. et al., 2017). Another study has shown that inoculation of Bacillus licheniformis influenced the enzyme activity of Daqu, including a significant increase in amylase activity, and the significant decrease in glucoamylase activity and esterase activity (Wang P. et al., 2017). Moreover, liquor yield, liquor flavor, and sensory appraisals were also compared by applying fortified Daqu and traditional Daqu for liquor production (Wu et al., 2009). Taken together, these studies only focused on the manufacture of fortified Daqu by evaluating physicochemical properties, enzyme activities, and microbial community structures, as well as by applying analyses of percent conversion and flavor characteristics to liquor production. Nevertheless, little attention has been paid to the bioturbation effects of fortified Daqu (especially for functional microbiota) on the community structure of the brewing process and their metabolisms. This study aimed to investigate the complex microbial community in the FG with different proportions of fortified Daqu used and to evaluate the effect of functional microbiota on the flavor of strong-flavor liquor.

In this study, the microbial communities were mainly dominated by three prokaryotic genera (Bacillus, Lactobacillus, and Lactococcus) and three eukaryotic genera (Aspergillus, Candida, and Thermoascus), which is consistent with many previous reports (Sun et al., 2016; Li H. et al., 2017; Wang X. et al., 2017). Clear differences of community compositions in different layers of FG were observed (Table 1 and Figure 4). The heterogeneity of microbial communities in different layers might be an important reason why liquors obtained from different layers exhibited different flavor compounds. For prokaryotes, Lactobacillus seemed to prefer to inhabit the bottom layer because of the anaerobic environments. A higher abundance of Bacillus (27.7% ∼ 44.0%) in the middle layer was observed possibly because the oxygen content is higher than that in the bottom layer. Eukaryotic diversity was lower in the middle layer by some aerobic eukaryotes with the disadvantage of competition for growth with the abundant Bacillus in FG0. In FG50 and FG100, acid production by abundant Lactobacillus might have inhibited other eukaryotes, resulting in a decrease of eukaryotic diversity in the bottom layer. Thus, as a disturbance, the fortified Daqu could regulate the microbial structure in the brewing ecosystem.

When fermented with fortified Daqu, as expected, the total relative abundance of Bacillus (sum of the proportion of the middle layer and the proportion of the bottom layer) increased in FG50 and FG100, and the highest abundance of Bacillus was observed in FG50-M (Figure 4A). Bacillus could secret various hydrolases including amylases, proteases, and lipases for macromolecular hydrolysis and produce flavor compounds in the brewing process (Yan et al., 2013b; Li H. et al., 2014; Li Z. et al., 2014). For example, Bacillus licheniformis could produce aromatic compounds, C4 compounds, pyrazines, and volatile acids by solid-state fermentation (Zhang et al., 2013). More importantly, improvement of hydrolase and flavor precursor production was obtained when Bacillus was co-cultured (Hero et al., 2017; Samad and Zainol, 2017). The corresponding liquor L50-M also exhibited higher contents of aromatic compounds, including 2,4-di-ter-butyl-phenol, (2,2-diethoxyethyl)-benzene, benzeneethanol, and ethyl phenylacetate (Supplementary Table S3). Especially for benzeneethanol and ethyl phenylacetate, they could endow rose-like and honey fragrances to the liquor (Fan and Qian, 2006a). Furthermore, RDA results indicated that these aromatic compounds were positively correlated with Bacillus in FG50-M (Figure 6A). Likewise, the relative abundance of Aspergillus increased to the highest concentration (47.1%) in FG50-M (Figure 4B), and Aspergillus showed a positive correlation with these aromatic compounds (Figure 6B). Aspergillus produce a wide spectrum of hydrolase for starch saccharification, protein hydrolysis, and flavonoid formation (Machida et al., 2008). Overall, Bacillus and Aspergillus were positively correlated with aromatic compounds, which was in agreement with the notion that Aspergillus produced higher contents of aromatic phenols, including 2-methoxyphenol, 2-methoxy-4-vinylphenol, and 4-ethyl-2-methoxyphenol in co-culture with Bacillus licheniformis (Wang P. et al., 2017). But this is slightly different from our results, because in addition to the aromatic phenols, the aromatic compounds also included ethyl phenylacetate, benzaldehyde, furfural, and benzeneethanol in our study. Therefore, when fermented with 50% fortified Daqu, the increased relative abundance of Bacillus and Aspergillus in FG may accelerate the brewing process and produce more aromatic compounds.

As for Lactobacillus, it could produce lactic acid from glucose, and the lactic acid can be further converted by enzymatic reaction into ethyl lactate, which can improve the mellow flavor of Chinese liquor (Gao et al., 2014). However, compared with FG fermented without the addition of fortified Daqu, the abundance of Lactobacillus significantly decreased in FG50-B (Figure 4A). Interestingly, the content of ethyl lactate was the highest (128.01 mg/L) in the corresponding liquor L50-B (Supplementary Table S3), and this could be attributed to the fact that (i) the relative abundance of Candida increased to the highest (71.3%) in FG50-B, (ii) the other lactic acid bacteria Lactococcus, Leuconostoc, and Streptococcus also can produce lactic acid, and (iii) lactic acid, together with ethanol produced by Candida, gets esterified into ethyl lactate. Additionally, L50-B presented higher levels of other important esters, including ethyl hexanoate, ethyl heptanoate, ethyl octanoate, butyl hexanoate, isopentyl hexanoate, and pentyl hexanoate (Supplementary Table S3). These esters also play pivotal roles in contributing fruity and floral flavors for Chinese liquor (Fan and Qian, 2006b). Moreover, RDA results also showed that Lactobacillus and Candida were highly positively correlated with these esters (Figure 6). These results indicated that Lactobacillus, together with Candida, can improve ester production through synergistic interactions and enhance the fruity flavor of liquor when brewed with 50% fortified Daqu.

Together, variations of microbial community with RDA results suggested that Lactobacillus and other prokaryotic genera were highly competitive during the brewing process. It could be confirmed by the correlations between Lactobacillus and genera Bacillus, Ruminococcus, Thermoactinomyces, Lactococcus, Ochrobactrum, Ralstonia, and Virgibacillus (Figure 6A). A negative correlation between Lactobacillus and the genera observed in this study is in agreement with that confirmed from the previously studied fermented grain (Wang X. et al., 2017). In addition, the abundance of Lactobacillus was found to be negatively correlated with hexanoic acid production as previously reported (Tao et al., 2014), and the liquor L50-B presented the highest content (73.02 mg/L) of hexanoic acid in the present study (Supplementary Table S3). These results demonstrated that an appropriate abundance of Lactobacillus and the exclusion relationship with other genera could help to produce hexanoic acid and maintain the stability of fermentation.

In particular, hexyl hexanoate was positively correlated with highly abundant Ruminococcus in the FG100 (Figure 6A). Ruminococcus was identified as the most dominant member of Clostridiales, showing a good ability for starch degradation (Mukhopadhya et al., 2017). Additionally, hydrogen produced by Ruminococcus could be transferred to Vibrio succinogenes, which was contributive to growth of Vibrio succinogenes (Iannotti et al., 1973). The main mechanism of synergistic interactions is interspecies hydrogen transfer in the brewing process (Thauer et al., 2008), and this mechanism helps to produce hexanoic acid by hexanoic acid bacteria (Tao et al., 2017). In this study, the important thermophilic fungi Thermoascus and Thermomyces possessed high abundance just below Aspergillus and Candida in the FG100 (Figure 4B), and they were also positively correlated with hexyl hexanoate (Figure 6B). Thermoascus and Thermomyces have all been reported to be high producers of thermophilic enzymes for carbohydrate degradation (Nguyen et al., 2002; Mcclendon et al., 2012). Taken together, Ruminococcus, Thermoascus, and Thermomyces could be the core genera in the brewing process and related to the formation of hexyl hexanoate.

In summary, fermented with an appropriate proportion of fortified Daqu (manufactured by inoculation Bacillus velezensis and Bacillus subtilis) evoked a significant regulation in microbial community structure and their metabolisms in the brewing process (Figure 7). To reveal the perturbation mechanism of Bacillus on brewing process, the effect of Bacillus on the microbial community and formation of volatile compounds in brewing process has been investigated. Bacillus could produce amylase for starch degradation, which could help to accelerate the brewing process. In addition, the microbial community structure in the FG was changed after inoculation of Bacillus by synergistic or exclusive interactions between the microbes. Furthermore, higher contents of aromatic compounds and main esters were observed in the liquor fermented with 50% fortified Daqu, which were mainly correlated with Bacillus, Aspergillus, Lactobacillus, and Candida. The results presented in this study indicated that Bacillus, as an exogenous disturbance, regulated the microbial community structure of the brewing ecosystem and played its own role.


Figure 7. A schematic representation of formation of flavor compounds by microbial metabolism in the brewing process.

Author Contributions

GH performed the experiments, analyzed the data, and prepared the manuscript. JH performed the experiments and contributed to manuscript discussion. RZ contributed to the experimental design, manuscript revision, and overall support of this study. CW and YJ contributed to manuscript revision.


This study was funded by the Science and Technology Support Program of Sichuan Province (2015KJT022-2011SZ).

Conflict of Interest Statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.


We thank Xufu Brewery Co., Ltd. (Yibin, China) for providing an experimental base.

Supplementary Material

The Supplementary Material for this article can be found online at:


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Keywords: fortified Daqu, microbial community, fermented grain, liquor flavor, brewing process, MiSeq sequencing

Citation: He G, Huang J, Zhou R, Wu C and Jin Y (2019) Effect of Fortified Daqu on the Microbial Community and Flavor in Chinese Strong-Flavor Liquor Brewing Process. Front. Microbiol. 10:56. doi: 10.3389/fmicb.2019.00056

Received: 13 August 2018; Accepted: 14 January 2019;
Published: 29 January 2019.

Edited by:

Liang Xue, Guangdong Institute of Microbiology (CAS), China

Reviewed by:

Zhi-Qiang Xiong, University of Shanghai for Science and Technology, China
Xiaoqing Hu, Jiangnan University, China

Copyright © 2019 He, Huang, Zhou, Wu and Jin. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Rongqing Zhou,