ORIGINAL RESEARCH article
Sec. Food Microbiology
Volume 10 - 2019 | https://doi.org/10.3389/fmicb.2019.01092
Dietary Quercetin Increases Colonic Microbial Diversity and Attenuates Colitis Severity in Citrobacter rodentium-Infected Mice
- Department of Gastroenterology and Hepatology, General Hospital, Tianjin Medical University, Tianjin, China
Disturbed balance between microbiota, epithelial cells, and resident immune cells within the intestine contributes to inflammatory bowel disease (IBD) pathogenesis. The Citrobacter rodentium-induced colitis mouse model has been well documented. This model allows the analysis of host responses to enteric bacteria and facilitates improved understanding of the potential mechanisms of IBD pathogenesis. The current study evaluated the effects of dietary 30 mg/kg quercetin supplementation on C. rodentium-induced experimental colitis in C57BL/6 mice. Following dietary quercetin supplementation, the mice were infected with 5 × 108 CFU C. rodentium, and the pathological effects of C. rodentium were measured. The results showed that quercetin alleviated the effects of C. rodentium-induced colitis, suppressed the production of pro-inflammatory cytokines, such as interleukin (IL)-17, tumor necrosis factor alpha, and IL-6 (p < 0.05), and promoted the production of IL-10 in the colon tissues (p < 0.05). Quercetin supplementation also enhanced the populations of Bacteroides, Bifidobacterium, Lactobacillus, and Clostridia and significantly reduced those of Fusobacterium and Enterococcus (p < 0.05). These findings indicate that dietary quercetin exerts therapeutic effects on C. rodentium-induced colitis, probably due to quercetin’s ability to suppress pro-inflammatory cytokines and/or modify gut microbiota. Thus, these results suggest that quercetin supplementation is effective in controlling C. rodentium-induced inflammation.
In the last decade, inflammatory bowel disease (IBD) has been one of the most frequently investigated human health issues associated with the gut microbiota (Kostic et al., 2014). More than 3.6 million people worldwide (Loftus, 2004) are affected with IBD, including Crohn’s disease (CD) and ulcerative colitis (UC), and the incidence of these diseases has been increasing in recent decades. The latter fact emphasizes the contribution of environmental factors to these diseases (Pillai, 2013). Thus, gut microbial communities have become a prominent research subject because of their effect on multiple aspects of health, such as IBD pathogenesis (Valdes et al., 2018).
The intestinal tract contains 10 trillion microorganisms (Dave et al., 2012) that are separated from the host’s mucosal immune cells by single layer of polarized epithelial cells play a crucial role in the development of the mucosal immune system. These symbiotic inhabitants, collectively known as the gut microbiota, also supply vital nutrients and limit the colonization of pathogenic microbes in the gut (Honda and Takeda, 2009). Evidence from both IBD patients and mouse models has shown that profound changes in the gut, such as intestinal microbiota development, play a major role in IBD pathogenesis (Gkouskou et al., 2014; Matsuoka and Kanai, 2015). Similar to enteropathogenic Escherichia coli (EPEC) and enterohemorrhagic E. coli (EHEC), Citrobacter rodentium is a member of the noninvasive group of attaching and effacing (A/E) bacteria that attach themselves to the intestinal epithelium and colonizes the host’s gut. At this point, the A/E pathogens induce alterations in the colonic tissue similar to those observed in cases of EPEC or EHEC infections in murine and human IBD (Law et al., 2013). A few models of infectious colitis exist, but in particular, the C. rodentium-induced colitis model (Law et al., 2013; Guan et al., 2016) has been well documented for studying the pathogenesis of host responses to enteric bacteria. This model can promote the understanding of the mechanism underlying IBD pathogenesis. Therefore, research related to C. rodentium is a key step for developing innovative prophylactic and therapeutic treatments.
Naturally found in fruits and vegetables, dietary antioxidant flavonoids are natural polyphenols. Recent studies have revealed that natural polyphenols exert potential preventative and therapeutic effects on various diseases (Ding et al., 2018; Hong and Piao, 2018). In certain organs, antioxidants provide inflammatory relief. Thus, natural polyphenols could be potential treatment options for IBD (Azuma et al., 2013). Quercetin is a flavonoid with antioxidant properties that is naturally present in most citrus fruits. It is considered to exert antidiabetic, antidepressant, and anti-inflammatory effects on cellular signaling pathways. In addition, quercetin inhibits tumor necrosis factor alpha (TNF-α) and interleukin (IL)-4 production in type I allergic reactions and decreases Th2-type cytokine production by basophils (Kim et al., 2014). It has also been proven to exert therapeutic effects on asthma, arthritis, and lung injury (Townsend and Emala, 2013); however, the precise mechanism by which it affects colitis is still unknown. Thus, this study was aimed at determining the potential effects of quercetin on C. rodentium-induced colitis in C57BL/6 mice.
Materials and Methods
C. rodentium Infection and Treatment/Animals and Experimental Design
This study was conducted according to the Chinese animal welfare guidelines after receiving approval from the Animal Care and Use Committee of General Hospital of the Tianjin Medical University. The study sample comprised pathogen-free female C57BL/6 mice that were kept under controlled conditions at 24 ± 2°C with a relative humidity of 60 ± 5% and a 12-h light/dark cycle (06:00–18:00). The control group (CTRL, n = 10) and the C. rodentium-infection group (CR-infection, n = 10) received a basal rodent diet. The quercetin group (QUE, n = 10) received a basal rodent diet supplemented with 30-mg/kg quercetin (Q0125, Sigma).
C. rodentium for infection was grown for 14 h in Luria Bertani (LB) broth containing 0.05-g/L nalidixic acid/mL. The cultures were then centrifuged at 3,000 × g for 10 min, and the pellets were resuspended in sterile phosphate-buffered saline (PBS). This C. rodentium culture with a final concentration of 5 × 108 CFU/ml was used for infection. Briefly, mice were fed quercetin and/or basal rodent diet for 2 weeks as per the group allocation, and the mice in the CR-infection and QUE groups were infected with the 5 × 108-CFU C. rodentium culture by gavage at 9:00 the next day. Subsequently, each mouse was housed in an individual cage to avoid reinfection from littermates. On day 7 post-infection, all mice were euthanized by CO2 asphyxiation.
The colonic mucosal tissues of all mice were removed using razors in ice and then stored frozen in liquid nitrogen. Colonic contents and feces were collected, weighed, and re-suspended in PBS, and their serial dilutions were then plated onto LB agar plates containing nalidixic acid. After 24 h, C. rodentium colonies were counted, and whether the colonies were of C. rodentium was confirmed using PCR with C. rodentium-specific primers (Bhinder et al., 2013).
Excised colonic mucosal tissue specimens were fixed in 10% formalin, embedded in paraffin, and cut into 3-μm sections. The sections were then stained with hematoxylin and eosin (HE) for visualization under a microscope (100× magnification). Blind histological scoring was performed by a pathologist using a six-grade system as described by Varshney et al. (2013).
Detection of Inflammatory Cytokines
The colonic mucosal tissues were pulverized using surgical scissors and homogenized in ice-cold PBS. The tissue homogenates were then centrifuged at 1,900× g at 4°C for 15 min to obtain the supernatant. The levels of pro-inflammatory cytokines IL-17, IL-6, TNF-α, and IL-10 were measured using commercial ELISA kits (eBioscience) following the manufacturer’s instructions.
DNA Extraction and Sequence Analysis
Immediately after collection, the colonic contents were frozen, their genomic DNA was extracted, and the DNA was amplified using primers specific to the V3-V4 region of 16S rRNA gene barcodes. The samples were combined and subjected to sequencing on the Illumina MiSeq platform in accordance with the manufacturer’s instructions (Fadrosh et al., 2014). In addition, quality filtering, chimera removal, and de novo operational taxonomic unit (OTU) clustering were conducted using the UPARSE pipeline (Edgar, 2013). Readings were replicated, organized, and grouped into candidate OUTs, and chimeric OUTs were removed.
The taxonomic assignment of the OUTs was annotated using RDP reference (version 16) with an identity threshold of 97% in the UPARSE pipeline. The OTU table with taxonomic assignments was converted into the “biom” format for compatibility with the QIIME software (Navas-Molina et al., 2013). Alpha diversity was calculated using QIIME, for which the existing significant difference between case/control was calculated with 999 Monte Carlo permutation and Bonferroni multiple correction.
Data are presented as the standard error of the mean. One-way analysis of variance was used for comparison between multiple experimental groups, and the significance of the differences between the groups was determined using Duncan’s multiple range test. The sample sizes were measured to ensure statistical validity, and p < 0.05 was considered statistically significant.
The body weights of the mice in the CTRL and QUE groups were not significantly different before and after the experiment, whereas those of the mice in the CR-infection group were lower after the experiment (Figure 1A). On day 7 postinfection, the C. rodentium count in the colonic contents or feces was not different between the CR-infection and QUE groups (Figures 1B,C). While comparing with the mice in the CTRL and QUE groups, the mice in the CR-infection group showed signs of colitis (Figures 2A–D).
Figure 1. C. rodentium load in the colonic contents and feces of infected C57BL/6 mice on day 7 postinfection. Colonic contents and feces were collected, homogenized, serially diluted, and plated on LB agar (n = 10 in each group). (A) average body weight, numberof C. rodentium in (B) colonic contents and (C) faeces. To ensure that only C. rodentium colonies were counted, the strain in each colony was confirmed using PCR with C. rodentium-specific primers. * indicates p < 0.05 compared with the CTRL group. # indicates p < 0.05 compared with the CR-infection group.
Figure 2. Histopathological evaluation scores for the mice on day 7 postinfection (n = 10 in each group). (A) Histological morphology of the colon (HE, ×100) in the (A) CTRL, (B) CR-infection, and (C) QUE groups. (D) Histological scores of the colon (n = 10 in each group). * indicates p < 0.05 compared with the CTRL group. # indicates p < 0.05 compared with the CR-infection group.
Compared with the mice in the CTRL group, those in the CR-infection and QUE groups showed significantly elevated IL-10 (Figure 3A), IL-17 (Figure 3B), IL-6 (Figure 3C), and TNF-α (Figure 3D) levels (all p < 0.05). Quercetin supplementation also significantly increased the IL-10 level in the QUE mice (Figure 3A) compared with the level found in the CR-infected mice (p < 0.05). However, quercetin supplementation in the QUE group appeared to mitigate the C. rodentium-induced increases in the IL-17 (Figure 3B), IL-6 (Figure 3C), and TNF-α (Figure 3D) levels (p < 0.05).
Figure 3. Effects of quercetin on the levels of pro-inflammatory cytokines (A) IL-10, (B) IL-17, (C) IL-6, and (D) TNF-α in mice (n = 10 in each group). * indicates p < 0.05 compared with the CTRL group. # indicates p < 0.05 compared with the CR-infection group.
Amplification of the V3-V4 region of the 16S rRNA gene obtained from the colonic contents of CTRL, CR-infected, and QUE groups provided raw readings (35,673, 37,894, and 33,511, respectively) to facilitate the assessment of the effects of C. rodentium infection and dietary quercetin on bacterial communities. Following trimming, assembly, and quality filtering, 2,895 OTUs were detected. Figure 4 presents the Shannon and Simpson diversity indices and microbial richness indices (Chao1 and ACE) in the groups. Compared with the CTRL group, the CR-infection group showed significantly increased Simpson index (p < 0.05) (Figure 4A) and decreased Chao1 (Figure 4B), Shannon (Figure 4C) and ACE indices (Figure 4D) (all, p < 0.05). Compared with the CR-infection group, the QUE group showed increased Chao1 (Figure 4B), Shannon (Figure 4C), and ACE indices (Figure 4D) (all, p < 0.05) and decreased Simpson index (Figure 4A) (p < 0.05). However, the observed alpha diversity of the microbiota showed no significant difference between the CTRL and QUE groups.
Figure 4. Diversity indices of bacterial communities in the mouse colonic contents (n = 10 in each group). Box plots show the differences in the microbiome diversity between the CTRL, CR-infection and QUE groups in terms of the (A) Simpson, (B) chao1, (C) Shannon, and (D) ACE indices. * indicates p < 0.05 compared with the CTRL group. # indicates p < 0.05 compared with the CR-infection group.
Taxon-dependent analysis was used to determine the intestinal microbiota taxonomy, and Bacteroidetes, Firmicutes, Proteobacteria, and Verrucomicrobia were found to be the most abundant phyla (Figures 5A–D). Their relative abundances were 56.32, 33.18, 2.42 and 2.45%, respectively, in the CTRL group; 67.54, 24.47, 2.45, and 4.31%, respectively, in the CR-infection group; and 57.24, 29.87, 2.89, and 3.13%, respectively, in the QUE group.
Figure 5. Colonic microbial composition at the phylum level. Relative abundances of (A) Bacteroidetes, (B) Firmicutes, (C) Proteobacteria, and (D) Verrucomicrobia members in the mouse colonic contents (n = 10 in each group). * indicates p < 0.05 compared with the CTRL group. # indicates p < 0.05 compared with the CR-infection group.
Microbial populations at the genus level in the colonic contents were also investigated (Figures 6A–F). The populations of Bacteroides, Bifidobacterium, Lactobacillus, and Clostridia were decreased (p < 0.05), and those of Fusobacterium and Enterococcus were increased in the CR-infection group (p < 0.05) compared with those in3 the CTRL group. Notably, compared with the CR-infection group, the QUE group showed enhanced populations of Bacteroides, Bifidobacterium, Lactobacillus, and Clostridia but suppressed populations of Fusobacterium and Enterococcus (p < 0.05) because of quercetin supplementation.
Figure 6. Colonic microbial composition at the genus level. Relative abundances of (A) Bacteroides, (B) Bifidobacterium, (C) Lactobacillus, (D) Clostridia, (E) Fusobacterium, and (F) members in the colonic contents (n = 10 in each group). * indicates p < 0.05 compared with the CTRL group. # indicates p < 0.05 compared with the CR-infection group.
Because of their inherent susceptibility to EPEC or EHEC, mice have been the most frequently used model for studying C. rodentium-induced intestinal infection or intestinal EPEC or EHEC infection. Although C. rodentium rarely causes intestinal diseases in humans, it can colonize all mice strains, causing either fatal or virtually asymptomatic illness depending on the mouse strain (Coleman et al., 2014; Scholz et al., 2016). The CD-1 and C57BL/6 mouse strains develop only subclinical symptoms and are considered resistant to C. rodentium-induced colitis, whereas FVB/N and C3H/HeJ mice strains exhibit C. rodentium infection and are considered susceptible (Borenshtein et al., 2008). In particular, mouse models of C. rodentium-induced infection are the most useful for studying infectious diseases and colitis in mice because they have been well documented for host responses to pathogenic bacteria. Our previous study showed that quercetin or quercetin monoglycoside supplementation can prevent dextran sulphate sodium-induced colitis (Hong and Piao, 2018). In that study, mice were fed quercetin to protect the gut and allow rapid recovery after C. rodentium infection. The results indicated that quercetin supplementation provided therapeutic benefits in the C. rodentium-induced infection model of gastrointestinal injury. Inflammatory responses and intestinal microflora composition were the most important determinants of host susceptibility.
Dietary preference has a major impact on the gut microbial composition throughout human life (Conlon and Bird, 2014; Yin et al., 2018). IBD has been shown to be associated with alterations in the human gut microbial composition (Willing et al., 2010; Tong et al., 2013). Decreased microbiome diversity has been observed in CD patients (Ma et al., 2018) and in monozygotic discordant twins with CD (Dicksved et al., 2008). Decreased microbiome diversity has mainly been attributed to reduced diversity of Firmicutes members and has been linked to temporal instability in both CD and UC (Coleman et al., 2014). Decreased diversity has also been observed in inflamed and noninflamed tissues, and CD patients generally exhibit reduced bacterial loads at inflammation sites (Willing et al., 2010; Zhu et al., 2018).
Dysregulation of the mucosal immune system can cause IBD and a pathogenic immune response against gut flora (Xu et al., 2014; Haag and Siegmund, 2015). The present study suggests that quercetin affects the progress of microbiota-associated diseases. Notably, quercetin supplementation increased gut microbial diversity, which may improve gut protection. In IBD patients, gut microbiota dysbiosis is a common occurrence, typically manifesting as a superfluity of facultative anaerobic bacteria and a simultaneous deficiency of obligate anaerobic bacteria of the classes Bacteroidia and Clostridia (Minamoto et al., 2015; Stecher, 2015). According to Wu et al., long-term dietary patterns may affect the ratios of Bacteroides, Firmicutes, and Prevotella populations, whereas short-term dietary changes may show limited effects (Wu et al., 2011). In addition, Zimmer et al. stated that strict vegan or vegetarian diets significantly decrease Bacteroides, Enterobacteriaceae, and Bifidobacterium populations (Zimmer et al., 2012). Enterobacteriaceae populations have been consistently found to be elevated in IBD patients. Therefore, further studies are warranted to evaluate the effects of both long-term and short-term dietary changes on gut microbiota and consequently on IBD (Azad et al., 2018; Guan and Lan, 2018).
Inflammation can also considerably affect the gut microbiota. Severe inflammation has been reported to increase the relative abundance of Salmonella and similar pathogens (Varshney et al., 2013; Saltzman et al., 2018). In the present study, C. rodentium-infected mice showed significantly increased levels of proinflammatory cytokines IL-6, TNF-α, and IL-17 in the colonic mucosal tissues compared with the CTRL mice (not infected). It has been demonstrated that quercetin protects against colonic damage linked to increases in the TNF-α level (Donder et al., 2018; Ju et al., 2018). In the present study, quercetin supplementation reduced localized production of inflammatory cytokines, which in turn promoted alterations in bacterial flora composition associated with rapid repair. This finding indicates that quercetin might restore the appropriate host-microbe relationship required to manage colitis by restoring the proinflammatory, anti-inflammatory, and bactericidal functions of enteric macrophages (Ju et al., 2018).
In summary, the findings of this study on the C. rodentium-infected mouse model demonstrated that quercetin could reduce the pathological effects of C. rodentium. This finding suggests that dietary quercetin can directly stimulate the immune system to reduce inflammation and restore gut microbial balance. Future studies using human subjects are desirable to confirm these effects of quercetin on inflammatory markers and provide a more comprehensive understanding of the quercetin-induced variations in the human gut microbiota.
All the data are available upon reasonable request at Dr. Rui Lin, firstname.lastname@example.org.
The current research was conducted according to Chinese animal welfare guidelines and following the granting of approval by the Animal Care and Use Committee of General Hospital of the Tianjin Medical University.
RL designed the experiment. RL, MP, and YS performed the experiment and statistical analysis. RL finished the draft of the manuscript. MP and YS revised the manuscript. All the authors read and approved the manuscript.
The project was supported by the National Natural Science Foundation of China (81600509).
Conflict of Interest Statement
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Azad, M. A. K., Sarker, M., Li, T., and Yin, J. (2018). Probiotic species in the modulation of gut microbiota: an overview. Biomed. Res. Int. 2018:9478630. doi: 10.1155/2018/9478630
Azuma, T., Shigeshiro, M., Kodama, M., Tanabe, S., and Suzuki, T. (2013). Supplemental naringenin prevents intestinal barrier defects and inflammation in colitic mice. J. Nutr. 143, 827–834. doi: 10.3945/jn.113.174508
Bhinder, G., Sham, H. P., Chan, J. M., Morampudi, V., Jacobson, K., and Vallance, B. A. (2013). The Citrobacter rodentium mouse model: studying pathogen and host contributions to infectious colitis. J. Vis. Exp. 72:e50222. doi: 10.3791/50222
Borenshtein, D., Mcbee, M. E., and Schauer, D. B. (2008). Utility of the Citrobacter rodentium infection model in laboratory mice. Curr. Opin. Gastroenterol. 24, 32–37. doi: 10.1097/MOG.0b013e3282f2b0fb
Coleman, C. M., Matthews, K. L., Goicochea, L., and Frieman, M. B. (2014). Wild-type and innate immune-deficient mice are not susceptible to the Middle East respiratory syndrome coronavirus. J. Gen. Virol. 95, 408–412. doi: 10.1099/vir.0.060640-0
Conlon, M. A., and Bird, A. R. (2014). The impact of diet and lifestyle on gut microbiota and human health. Nutrients 7, 17–44. doi: 10.1080/19490976.2017.1299309
Dave, M., Higgins, P. D., Middha, S., and Rioux, K. P. (2012). The human gut microbiome: current knowledge, challenges, and future directions. Transl. Res. 160, 246–257. doi: 10.1016/j.trsl.2012.05.003
Dicksved, J., Halfvarson, J., Rosenquist, M., Jarnerot, G., Tysk, C., Apajalahti, J., et al. (2008). Molecular analysis of the gut microbiota of identical twins with Crohn’s disease. ISME J. 2, 716–727. doi: 10.1038/ismej.2008.37
Ding, S., Jiang, H., and Fang, J. (2018). Regulation of immune function by polyphenols. J. Immunol. Res. 2018:1264074. doi: 10.1155/2018/1264074
Donder, Y., Arikan, T. B., Baykan, M., Akyuz, M., and Oz, A. B. (2018). Effects of quercitrin on bacterial translocation in a rat model of experimental colitis. Asian J. Surg. 41, 543–550. doi: 10.1016/j.asjsur.2017.12.002
Edgar, R. C. (2013). UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10, 996–998. doi: 10.1038/nmeth.2604
Fadrosh, D. W., Ma, B., Gajer, P., Sengamalay, N., Ott, S., Brotman, R. M., et al. (2014). An improved dual-indexing approach for multiplexed 16S rRNA gene sequencing on the Illumina MiSeq platform. Microbiome 2:46941. doi: 10.1186/2049-2618-2-6
Gkouskou, K. K., Deligianni, C., Tsatsanis, C., and Eliopoulos, A. G. (2014). The gut microbiota in mouse models of inflammatory bowel disease. Front. Cell. Infect. Microbiol. 4:28. doi: 10.3389/fcimb.2014.00028
Guan, G., and Lan, S. (2018). Implications of antioxidant systems in inflammatory bowel disease. Biomed. Res. Int. 2018:1290179. doi: 10.1155/2018/1290179
Guan, G., Wang, H., Chen, S., Liu, G., Xiong, X., Tan, B., et al. (2016). Dietary chitosan supplementation increases microbial diversity and attenuates the severity of Citrobacter rodentium infection in mice. Mediat. Inflamm. 2016:9236196. doi: 10.1155/2016/9236196
Haag, L. M., and Siegmund, B. (2015). Intestinal microbiota and the innate immune system – a crosstalk in Crohn’s disease pathogenesis. Front. Immunol. 6:489. doi: 10.3389/fimmu.2015.00489
Honda, K., and Takeda, K. (2009). Regulatory mechanisms of immune responses to intestinal bacteria. Mucosal Immunol. 2, 187–196. doi: 10.1038/mi.2009.8
Hong, Z., and Piao, M. (2018). Effect of quercetin monoglycosides on oxidative stress and gut microbiota diversity in mice with dextran sodium sulphate-induced colitis. Biomed. Res. Int. 2018:8343052. doi: 10.1155/2018/8343052
Ju, S., Ge, Y., Li, P., Tian, X., Wang, H., Zheng, X., et al. (2018). Dietary quercetin ameliorates experimental colitis in mouse by remodeling the function of colonic macrophages via a heme oxygenase-1-dependent pathway. Cell Cycle 17, 53–63. doi: 10.1080/15384101.2017.1387701
Kim, M., Lim, S. J., Kang, S. W., Um, B. H., and Nho, C. W. (2014). Aceriphyllum rossii extract and its active compounds, quercetin and kaempferol inhibit IgE-mediated mast cell activation and passive cutaneous anaphylaxis. J. Agric. Food Chem. 62, 3750–3758. doi: 10.1021/jf405486c
Kostic, A. D., Xavier, R. J., and Gevers, D. (2014). The microbiome in inflammatory bowel disease: current status and the future ahead. Gastroenterology 146, 1489–1499. doi: 10.1053/j.gastro.2014.02.009
Law, R. J., Gur-Arie, L., Rosenshine, I., and Finlay, B. B. (2013). In vitro and in vivo model systems for studying enteropathogenic Escherichia coli infections. Cold Spring Harb. Perspect. Med. 3:a009977. doi: 10.1101/cshperspect.a009977
Loftus, E. V. Jr. (2004). Clinical epidemiology of inflammatory bowel disease: incidence, prevalence, and environmental influences. Gastroenterology 126, 1504–1517. doi: 10.1053/j.gastro.2004.01.063
Ma, H. Q., Yu, T. T., Zhao, X. J., Zhang, Y., and Zhang, H. J. (2018). Fecal microbial dysbiosis in Chinese patients with inflammatory bowel disease. World J. Gastroenterol. 24, 1464–1477. doi: 10.3748/wjg.v24.i13.1464
Matsuoka, K., and Kanai, T. (2015). The gut microbiota and inflammatory bowel disease. Semin. Immunopathol. 37, 47–55. doi: 10.1007/s00281-014-0454-4
Minamoto, Y., Otoni, C. C., Steelman, S. M., Buyukleblebici, O., Steiner, J. M., Jergens, A. E., et al. (2015). Alteration of the fecal microbiota and serum metabolite profiles in dogs with idiopathic inflammatory bowel disease. Gut Microbes 6, 33–47. doi: 10.1080/19490976.2014.997612
Navas-Molina, J. A., Peralta-Sanchez, J. M., Gonzalez, A., Mcmurdie, P. J., Vazquez-Baeza, Y., Xu, Z., et al. (2013). Advancing our understanding of the human microbiome using QIIME. Methods Enzymol. 531, 371–444. doi: 10.1016/B978-0-12-407863-5.00019-8
Pillai, S. (2013). Rethinking mechanisms of autoimmune pathogenesis. J. Autoimmun. 45, 97–103. doi: 10.1016/j.jaut.2013.05.003
Saltzman, E. T., Palacios, T., Thomsen, M., and Vitetta, L. (2018). Intestinal microbiome shifts, dysbiosis, inflammation, and non-alcoholic fatty liver disease. Front. Microbiol. 9:61. doi: 10.3389/fmicb.2018.00061
Scholz, J., Laliberte, C., Van Eede, M., Lerch, J. P., and Henkelman, M. (2016). Variability of brain anatomy for three common mouse strains. NeuroImage 142, 656–662. doi: 10.1016/j.neuroimage.2016.03.069
Stecher, B. (2015). The roles of inflammation, nutrient availability and the commensal microbiota in enteric pathogen infection. Microbiol. Spectr. 3. doi: 10.1128/microbiolspec.MBP-0008-2014
Tong, M., Li, X., Wegener Parfrey, L., Roth, B., Ippoliti, A., Wei, B., et al. (2013). A modular organization of the human intestinal mucosal microbiota and its association with inflammatory bowel disease. PLoS One 8:e80702. doi: 10.1371/journal.pone.0080702
Townsend, E. A., and Emala, C. W. Sr. (2013). Quercetin acutely relaxes airway smooth muscle and potentiates beta-agonist-induced relaxation via dual phosphodiesterase inhibition of PLCbeta and PDE4. Am. J. Physiol. Lung Cell. Mol. Physiol. 305, L396–L403. doi: 10.1152/ajplung.00125.2013
Valdes, A. M., Walter, J., Segal, E., and Spector, T. D. (2018). Role of the gut microbiota in nutrition and health. BMJ 361:k2179. doi: 10.1136/bmj.k2179
Varshney, J., Ooi, J. H., Jayarao, B. M., Albert, I., Fisher, J., Smith, R. L., et al. (2013). White button mushrooms increase microbial diversity and accelerate the resolution of Citrobacter rodentium infection in mice. J. Nutr. 143, 526–532. doi: 10.3945/jn.112.171355
Willing, B. P., Dicksved, J., Halfvarson, J., Andersson, A. F., Lucio, M., Zheng, Z., et al. (2010). A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes. Gastroenterology 139, 1844–1854 e1841. doi: 10.1053/j.gastro.2010.08.049
Wu, G. D., Chen, J., Hoffmann, C., Bittinger, K., Chen, Y. Y., Keilbaugh, S. A., et al. (2011). Linking long-term dietary patterns with gut microbial enterotypes. Science 334, 105–108. doi: 10.1126/science.1208344
Xu, X. R., Liu, C. Q., Feng, B. S., and Liu, Z. J. (2014). Dysregulation of mucosal immune response in pathogenesis of inflammatory bowel disease. World J. Gastroenterol. 20, 3255–3264. doi: 10.3748/wjg.v20.i12.3255
Yin, J., Li, Y., Han, H., Chen, S., Gao, J., Liu, G., et al. (2018). Melatonin reprogramming of gut microbiota improves lipid dysmetabolism in high-fat diet-fed mice. J. Pineal Res. 65:e12524. doi: 10.1111/jpi.12524
Zhu, D., Ma, Y., Ding, S., Jiang, H., and Fang, J. (2018). Effects of melatonin on intestinal microbiota and oxidative stress in colitis mice. Biomed. Res. Int. 2018:2607679. doi: 10.1155/2018/2607679
Zimmer, J., Lange, B., Frick, J. S., Sauer, H., Zimmermann, K., Schwiertz, A., et al. (2012). A vegan or vegetarian diet substantially alters the human colonic faecal microbiota. Eur. J. Clin. Nutr. 66, 53–60. doi: 10.1038/ejcn.2011.141
Keywords: Citrobacter rodentium, colitis, gut microbiota, diet, quercetin, inflammatory bowel disease
Citation: Lin R, Piao M and Song Y (2019) Dietary Quercetin Increases Colonic Microbial Diversity and Attenuates Colitis Severity in Citrobacter rodentium-Infected Mice. Front. Microbiol. 10:1092. doi: 10.3389/fmicb.2019.01092
Edited by:Jie Yin, Institute of Subtropical Agriculture (CAS), China
Reviewed by:Longhuo Wu, Gannan Medical University, China
Bi E. Tan, Institute of Subtropical Agriculture (CAS), China
Copyright © 2019 Lin, Piao and Song. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Rui Lin, email@example.com