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ORIGINAL RESEARCH article

Front. Microbiol., 11 July 2019
Sec. Extreme Microbiology
This article is part of the Research Topic Living with Salt: Genetics and Ecology of Halophiles View all 17 articles

Insights Into the Microbiology of the Chaotropic Brines of Salar de Atacama, Chile

  • 1Laboratorio de Complejidad Microbiana y Ecología Funcional, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
  • 2Department of Chemical Engineering and Mineral Process, Center for Advanced Study of Lithium and Industrial Minerals, Universidad de Antofagasta, Antofagasta, Chile
  • 3Centre for Biotechnology and Bioengineering, Universidad de Chile, Santiago, Chile
  • 4Laboratorio Química Biológica, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
  • 5Departamento de Química, Facultad de Ciencias Básicas, Universidad de Antofagasta, Antofagasta, Chile
  • 6Laboratorio Microbiología, Instituto de Biología, Facultad de Ciencias, Pontificia Universidad Católica de Valparaíso, Valparaíso, Chile
  • 7Departamento de Ciencias de los Alimentos, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile
  • 8Departamento de Biotecnología, Facultad de Ciencias del Mar y Recursos Biológicos, Universidad de Antofagasta, Antofagasta, Chile

Microbial life inhabiting hypersaline environments belong to a limited group of extremophile or extremotolerant taxa. Natural or artificial hypersaline environments are not limited to high concentrations of NaCl, and under such conditions, specific adaptation mechanisms are necessary to permit microbial survival and growth. Argentina, Bolivia, and Chile include three large salars (salt flats) which globally, represent the largest lithium reserves, and are commonly referred to as the Lithium Triangle Zone. To date, a large amount of information has been generated regarding chemical, geological, meteorological and economical perspectives of these salars. However, there is a remarkable lack of information regarding the biology of these unique environments. Here, we report the presence of two bacterial strains (isolates LIBR002 and LIBR003) from one of the most hypersaline lithium-dominated man-made environments (total salinity 556 g/L; 11.7 M LiCl) reported to date. Both isolates were classified to the Bacillus genera, but displayed differences in 16S rRNA gene and fatty acid profiles. Our results also revealed that the isolates are lithium-tolerant and that they are phylogenetically differentiated from those Bacillus associated with high NaCl concentration environments, and form a new clade from the Lithium Triangle Zone. To determine osmoadaptation strategies in these microorganisms, both isolates were characterized using morphological, metabolic and physiological attributes. We suggest that our characterization of bacterial isolates from a highly lithium-enriched environment has revealed that even at such extreme salinities with high concentrations of chaotropic solutes, scope for microbial life exists. These conditions have previously been considered to limit the development of life, and our work extends the window of life beyond high concentrations of MgCl2, as previously reported, to LiCl. Our results can be used to further the understanding of salt tolerance, most especially for LiCl-dominated brines, and likely have value as models for the understanding of putative extra-terrestrial (e.g., Martian) life.

Introduction

The survival and growth of living organisms in any environment is controlled by biotic and abiotic factors (Kristjánsson and Hreggvidsson, 1995). From an anthropocentric point of view, extreme environments can be defined as habitats where one or more abiotic conditions extend beyond the typical physiological tolerances of most higher organisms (Wiegel and Canganella, 2011), e.g., low or high temperatures, extremes of pH, high concentrations of metals or salts (Peoples and Bartlett, 2017). Organisms that can live in such hostile habitats are typically microbes, and are commonly known as extremophile or extremotolerant taxa (Rodriguez-Valera et al., 1985; Orellana et al., 2018). The most commonly used classification of extremophile is related to NaCl concentrations, where taxa can be classified as either non-halophilic, halophile and extremely halophile (Tiquia et al., 2007; Lee et al., 2018). Such microorganisms are commonly found in evaporation ponds, sea waters, saline salterns, and sediments, as well as other saline habitats (Maheshwari and Saraf, 2015; Lee et al., 2018). In particular, bacteria belonging to the Bacillales order are found in almost every environment on Earth from the stratosphere (Sass et al., 2008), through to NaCl-hypersaline environments, such as salterns (Garabito et al., 1998), saline soils (Zahran, 1997), freshwater lakes (Bagheri et al., 2012; Amoozegar et al., 2014, 2016), and even in alkaline lakes (Weisser and Trüper, 1985). Moreover, they have been isolated from brines with different chemical composition including MgCl2 (Hallsworth et al., 2007; Sass et al., 2008), Na2CO3 (Jones et al., 1998), and NaCl/LiCl (Rodríguez-Contreras et al., 2013; Martínez et al., 2018). There is an increasing awareness that saline environments include both natural and artificial environments, and extend beyond those dominated by NaCl, with microbial life being reported at high salinities of other salts or even different pH as Na2CO3 (Imhoff et al., 1979; Banciu and Muntyan, 2015), CaCl2 (Dickson et al., 2013), MgCl2 (Yakimov et al., 2015), LiCl (Cubillos et al., 2018) or acid (Benison, 2008, 2019) and basic brines (Samylina et al., 2014).

Lithium is the 27th most abundant element on Earth (Aral and Vecchio-Sadus, 2008), and worldwide concentrations are ∼ 65 ppm (Habashi, 1997; Aral and Vecchio-Sadus, 2008). In nature, lithium is found in both a solid (in minerals) and liquid form, as brines in aquatic ecosystems (Wanger, 2011). An alkaline-metal belonging to Group I of the periodic table, lithium is known for its wide use, including the manufacture of glass and ceramics as well as the treatment of psychiatric disorders (Kszos et al., 2003). It is also used to determine the age of stars and the consumption of planets by these celestial bodies (Israelian et al., 2004).

The so-called Lithium Triangle Zone represents up to 85% of global reserves of soluble lithium (Martínez et al., 2018) and is formed by the Salar del Hombre Muerto (Argentina), Salar de Uyuni (Bolivia) and Salar de Atacama (Chile). Approximately 70% of all global production of lithium (approximately) is derived from Salar del Hombre Muerto (16% of Li2CO3 production) and Salar de Atacama (53% of Li2CO3 production) (Tahil, 2007; Nacif and Lacabana, 2015). Although dominated by NaCl, the brines in these salares have the highest average concentration of lithium reported from natural environments, Salar de Uyuni: 400–700 mg/L; Salar del Hombre Muerto: 773 mg/L; and Salar de Atacama: 1,500 mg/L Li (Habashi, 1997). The recent upsurge in the use of lithium as a raw material for batteries for vehicles and electronic devices has increased global demand (Wanger, 2011). The industrial process used to obtain these products begins with the pumping of natural brines (0.12% Li), which are then treated to increase lithium concentration in a sequential process of evaporation using natural solar radiation (which is extremely elevated in the region). Finally, the concentrated brines (6% Li) are used as a raw material in chemical processes to obtain lithium products (Garret, 2004). These natural Li reservoirs have been widely characterized from geological, hydrological, meteorological and economical viewpoints (Garret, 2004; Vila, 2010; An et al., 2012; Nacif and Lacabana, 2015). Microbial communities have been less studied, but have shown a recent increase in interest (Perez-Fernandez et al., 2016; Haferburg et al., 2017; Rubin et al., 2017; Cubillos et al., 2018; Martínez et al., 2018). At a microbiological level, lithium has been classified as an antimicrobial compound (Lieb, 2004), associated with the stimulation of autolysis (Sugahara et al., 1983), sporulation in Bacillus-species (Warburg et al., 1985; Li et al., 2014) or growth inhibition in fungi (Kurita and Funabashi, 1984) and yeasts (Morris, 2004). Nevertheless, the capacity of some bacteria to accumulate lithium by teichoic acid polymers from solution has been reported (Tsuruta, 2005; Belfiore et al., 2018).

Since the first description of dormancy in Bacillus subtilis (Cohn, 1872) and the recognition of Bacillus anthracis as the agent of anthrax (Koch, 1876), the importance of the genus Bacillus was recognized early in the timeline of modern science (Zeigler and Perkins, 2015). A Gram-positive, aerobic or facultative anaerobic microorganism with rod-shaped cells, Bacillus is among the most well-characterized microbial genera at biochemical, genomic, and proteomic levels (Alcaraz et al., 2010). The ubiquity of this microbial group has been well reported, due to its presence in a wide range of contrasting habitats including air, fresh and marine water, alkaline soils, geothermal heated soils, stone surfaces of ancient monuments, soda lakes, and cold environments (Logan and De Vos, 2015), highlighting the wide metabolic potential of Bacillus (Alcaraz et al., 2010). Colonial morphology in Bacillus varies from circular to irregular, from entire edge to undulate, with sizes ranging from 1 to 5 mm and colors from a creamy-gray to off-white (Logan and De Vos, 2015). Up until 2015, 142 Bacillus-species were described (Logan and De Vos, 2015), with species subclassified according to their ecophysiology as halophile, acidophiles, psychrophiles, alkalophiles, and thermophiles (Ravel and Fraser, 2005). An alternative approach to classification of Bacillus species reflects their use by, and their impacts on human society, including environmental (B. subtilis), pathogenic (B. anthracis), and industrial uses (B. licheniformis) (Alcaraz et al., 2010). Beyond their use in industry, the highly resistant endospores of B. subtilis have been widely studied as a model species in astrobiology (Nicholson et al., 2000). Genomic studies of Bacillus from different habitats (halophile, aquatic, pathogenic, deep-ocean, and soil) have revealed that 814 genes form the core genome of Bacillus and that 53 are related to sporulation and the competence core genome (Alcaraz et al., 2010). The high variability of this genome zone indicates that sporulation and spore resistance reflects that of the niche occupied (Alcaraz et al., 2010).

Here, we evaluated growth in the presence of lithium of two lithium-tolerant bacterial isolates obtained from a hypersaline LiCl-dominated environment (total salinity 556 g/L; 11.7 M LiCl), (Cubillos et al., 2018). Furthermore, we compared the similarities of the 16S rRNA gene of our isolates with type strains of Bacillus associated with NaCl and from the Lithium Triangle Zone of South America. We hypothesize that Salar de Hombre Muerto, Salar de Uyuni and Salar de Atacama support extreme, unique and unstudied microbial life capable of resisting the presence of various stressful agents including high concentrations of lithium and other salts, chaotropic activity, evaporation, and high radiation, providing a potential microbial niche. Furthermore, we suggest that this information could be important for understanding physiology at the extreme boundary of life in terrestrial or even extra-terrestrial brines such as those found on Mars (Benison and Bowen, 2006).

Materials and Methods

Study Site and Sampling

Concentrated lithium brines (5.8% Li) were obtained as a product of the last stage of the industrial evaporation process performed in the Salar de Atacama (Figure 1). In August 2014, 5 l of these brines were collected directly from one evaporation pool. This brine was transported (1 h) to the laboratory and then stored at 4°C for 2 days in darkness until further processing. The total dissolved salts were measured by drying the brines at 180°C (SM 2540 C) and absolute salinity was calculated from chemical analysis. Ions including lithium, magnesium, sodium, calcium, and potassium were measured by direct aspiration flame-air atomic absorption spectrophotometry (Model220FSVarian, Inc.). Sulfates were measured by gravimetry (SM 4500-SO4–2-D) and chloride through the argentometric method (SM 4500-Cl-B). The remaining chemical and physical characterizations are described by Cubillos et al., 2018.

FIGURE 1

Enrichment, Isolation, and Identification

To obtain microbial cells from lithium concentrated brines, a series of eight different media were used to enrich cultures. Three commercial media were used: Marine Broth (BD Difco, Thermo Fisher Scientific), Tryptic Soy Broth (BD Difco, Thermo Fisher Scientific) and Luria Bertoni Broth (BD Difco, Thermo Fisher Scientific). Five non-commercial media for halophile/halophilic microorganisms (Rodriguez-Valera et al., 1983; Oren et al., 1995; Payne et al., 2010; Makhdoumi-Kakhki et al., 2012) and one self-designed medium based on the chemical composition of lithium brines (Cubillos et al., 2018) were also used as basal media. 700 μL of concentrated brines at room temperature (25°C) and 7 mL of each medium were added in plastic sterile containers of 15 mL. The enrichment cultures were grown at 37°C (temperature used for the culture of extreme halophiles with salinities of 20 % w/v NaCl or more; Schneegurt, 2012) and agitated at 130 rpm for 4 weeks. The observation of turbidity of media (with respect to a negative control) was considered indicative of microbial growth. Subsequently, cultures were grown in Luria Bertoni Broth (due to positive results) then to 50 mL of medium using 5 mL of the previous culture as inoculum and agitated at 130 rpm for 3 months, until turbidity was displayed. Three transfers of inoculum to fresh medium were performed each week and the colonies obtained were isolated using Luria Bertoni agar at 25°C, reflecting the highest air temperature reported from Salar de Atacama (Alonso and Risacher, 1996) where the brines were obtained. In parallel, the cells were stained using Gram stain to allow their initial characterization. Furthermore, the isolates obtained were evaluated metabolically using the Biolog GEN III MicroPlateTM system (BiologTM, United States) following the manufacturer’s guidelines. The microplates were read by Infinite M200 PRO plate reader, TECAN. Positive reactions were considered greater than 50% of positive control, while negative reactions less than 25% of positive control. The enzymatic profiles of isolates were performed using APIR ZYM Galleries (bioMérieux Inc, France), following the manufacturer’s protocol.

Microbial Growth of LIBR002 and LIBR003 Strains

The microbial growth of LIBR002 and LIBR003 strains was evaluated in Luria Bertoni Broth medium (BD Difco, Thermo Fisher Scientific) under different conditions: Temperature (20–45°C), NaCl concentrations (0–4.2 M), lithium concentrations (0–7.2 M Li+), and pH (2–9) at 660 rpm in triplicate. Bacterial growth was evaluated (OD600 nm) using CorningR 96 Well Clear Polystyrene Microplates (Life Sciences) and evaluated for 30 h by a Microplate Spectrophotometer (MultiskanTM GO Thermo Scientific, Japan). Furthermore, to determine the inhibitory effects of lithium, cultures were grown in equimolar concentrations of Na/Li (Condition 1: 0.1 M; Condition 2: 0.5 M; Condition 3: 1 M) or with variation of Na/Li ions concentrations (Condition 4: 0.5 M Na-0.1 M Li or Condition 5: 0.1 M Na-0.5 M Li).

DNA Extraction and Sequencing

DNA extraction was conducted from a single colony using the GeneJET genomic DNA Purification Kit (Thermo Fisher Scientific, United States), following the manufacturer’s protocol. DNA concentrations and quality were measured by Nanodrop spectrophotometer (Nanodrop 8000, Thermo Fisher Scientific, Ottawa, ON, Canada). The oligonucleotide primers Eub27F (5′-AGAGTTTGATCMTGGCTCAG-3′) and Eub1542R (5′-AGAAAGGAGGTGATCCAGCC-3′) (Stackebrandt and Liesack, 1993) were used to amplify 16S rRNA gene fragments using 30–50 ng of gDNA as template. The PCR reaction was performed in a final volume of 25 μL, containing 5 μL PCR GoTaq Buffer 5×, 1.7 μL MgCl2 (1.7 mM), 1 μL dNTPS (2 Mm final), 1 μL of each primer (0.8 μM), 0.25 μL GoTaq DNA polymerase (1.25 U) and 2 μL of DNA. The amplicon products were visualized on agarose gel at 0.8% and were selected for its sequencing. Full-length bacterial 16S rRNA gene sequences of approximately 1,400 bp were sequenced using Sanger sequencing technologies (Macrogen Inc., South Korea). These complete sequences of the 16S rRNA gene of isolates have been deposited in GenBank1 under access number MK421396 (isolate LIBR002) and MK421402 (isolate LIBR003).

Classification of Halophilic and Halotolerant Microorganisms

We undertook a detailed bibliographical review to determine validly described species associated with NaCl belonging to the genus Bacillus. Halophile or halotolerant type strains and their sequences were obtained by the List of Prokaryotic Names with position in the Nomenclature (LPSN) and used for phylogenetic analysis. The requirements of NaCl (halophiles) or degree of tolerance (halotolerants) were verified with the concentrations of salts reported in each publication for optimal growth or maximum growth obtained. In the case of Bacillus-tolerant strains, they were subcategorized according to Larsen’ Classification (Larsen, 1986) as slightly or moderately halotolerant. For halophiles, they were subcategorized as slightly or moderately halophile according to Kushner’ classification (Kushner, 1978). Sequences of Bacillus-tolerant isolates were obtained from GenBank (see text footnote 1), according to each access number (Rodríguez-Contreras et al., 2013; Martínez et al., 2018).

Phylogenetic Analysis

The 16S rRNA sequences were analyzed and assembled by ChromasPRO software (version 2.1.8). Sequences were compared with GenBank using Blastn and Ribosomal Database Project (RDP). Furthermore, the complete 16S rRNA gene sequences (∼1,400 bp) of isolates were aligned using Muscle (Edgar, 2004). A phylogenetic reconstruction was generated and analyzed by maximum parsimony analysis (evolutionary changes) using a bootstrap of 1,000 interactions and the Neighbor-Joining algorithm with the Jukes-Cantor substitution model in Mega 7 (Kumar et al., 2016).

Preparation of Fatty-Acid Methyl Esters (FAMEs)

The estimation of fatty acids was performed via the extraction to FAMEs (Komagata and Susuki, 1987) and MIDI protocol (Sasser, 1987). Each sample was subjected to saponification by adding 1 mL of 3.75 M NaOH solution in MeOH/H2O (1:1 v/v) to a glass tube containing 6 mg of lyophilized mass of strains. The tubes were vortexed, sealed with Teflon, and heated at 100°C for 5 min. Samples were then vortexed vigorously for 10 seconds and returned to the water bath for heating by 30 min. The samples were cooled firstly, and then methylation step was initiated by the addition of 2 mL of 6.0 M HCl solution in MeOH/H2O (1:2 v/v). The samples were again sealed with fresh Teflon prior to capping, vortexed and then heated at 80°C for 10 min. The samples were cooled to room temperature, and 1.25 mL of n-hexane/methyl-tert-butyl ether (1:1 v/v) was added and gently shaken on a rotator for about 10 min. The tubes are uncovered and the aqueous phase (bottom) pipetted and discarded. The organic layer containing the methylated fatty acids was washed using 3 mL of 0.3 M NaOH solution, tubes then recapped and stirred for 5 min. After uncapping, the upper n-hexane/methyl-tert-butyl ether phase containing the FAMEs was transferred to vials sealed for analysis by GC.

Analysis and Quantification of FAMEs

The quantification of fatty acid methyl ester derivatives was performed at the Universidad de Antofagasta, Chile using a gas chromatograph (Shimadzu GC-2010, Shimadzu Co, Kyoto, Japan) equipped with a split/splitless capillary injector and flame ionization detector (FID) locked to a capillary column: 30 m in length, internal dimension 0.32 mm with a 0.25 μM film thickness, coated with 90% biscyanopropyl and 10% phenyl cyanopropyl polysiloxane, RT2330 RESTEK, United States. The temperature of the split injector was 250°C. High-purity grade Nitrogen (N2) was used as the carrier gas at a flow rate of 11.25 mL/min. The FID flame was produced using synthetic air and high-purity grade hydrogen. The temperature of the detector was 280°C. Quantification of FAMEs was achieved by comparing the retention times of the methyl ester derivatives obtained from external standard FAME-Mix (FAME Mix C4-C24, Supelco Analytical, Sigma-Aldrich).

Statistical Analysis

The generation time (g) was calculated by equation g = t/n, where t was time (hours) and n as number of generation (Madigan et al., 2008). The generation time obtained under each growth condition were compared through one-way analysis of variance (ANOVA), followed by Bonferroni’s post hoc test. Significant differences are represented with *p < 0.05, ∗∗p < 0.001, and ∗∗∗p < 0.0001. Figures were generated using GraphPad Prism, version 6.0 (GraphPad Software, Inc., La Jolla, CA, United States).

Scanning Electron Microscopy (SEM)

Cells in suspension were fixed in 2% glutaraldehyde and 2% paraformaldehyde in 0.1 M sodium cacodylate buffer pH 7.2 and kept in at 5°C until further processing. After this, cells were washed for 3 × 5 min with buffer and dehydrated in an ethanol gradient – 30, 50, 70, 80, 90, and 95%, 2 × 100% v/v- 10 min per step and then transferred onto a 0.22 μm polycarbonate filter using a mild vacuum. The filter was kept in 100% ethanol then incubated for 1 min in HMDS (hexamethyldisilazane) before air-drying the filter. Pieces of the filter were mounted onto an aluminum sample pin using carbon conductive tabs. Samples were sputter coated with 10 nm gold/palladium (80/20). Samples were then imaged using a JEOL JSM 6390 LV Scanning Electron Microscope operated at 5 kV in the Living Systems Institute, at the University of Exeter, United Kingdom.

Results

Halophilic Bacillus Extend Beyond NaCl to LiCl

The liquid culture of lithium brines, using Luria Bertoni Broth medium, showed turbidity after 3 months, unlike the rest of the other media. Three colonies in total were obtained from enrichment cultures, though two exhibited different colony morphology, then they were isolated and were designated as LIBR002 and LIBR003 strains. Both isolates were classified as Bacteria and as members of the Bacillus genus. The phylogeny of NaCl-associated Bacillus (Figure 2) showed that the isolates obtained in this study (in dark red) grouped close to lithium-tolerant isolates from Salar del Hombre Muerto and Salar de Uyuni and apart from halophilic and halotolerant Bacillus-species. Partial 16S rRNA gene sequences (∼1,400 bp) obtained from isolates were compared with sequences from Bacillus obtained from the Lithium Triangle Zone (Figure 3). Strain LIBR002 was phylogenetically related with Bacillus pumilus strain V2 (from Salar de Hombre Muerto), while strain LIBR003 showed low similarity with other sequences. Of all the type strain sequences (44) analyzed from NaCl-associated Bacillus, 48% were halophiles (moderately and slightly), 27 % were halotolerant and 25 % were lithium-tolerant.

FIGURE 2
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Figure 2. Phylogenetic tree using sequence of 16S rRNA gene (∼1400 bp) of Bacillus related-NaCl. The strains obtained in this study are shown in dark red, lithium-tolerant in pink, slightly halotolerant in olive, moderately halotolerant in black, slightly halophile in teal and moderately halophiles in green color. Access numbers are shown in parentheses and Sulfobacillus acidophilus was used as outgroup (blue).

FIGURE 3
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Figure 3. Phylogenetic tree using sequence of 16S rRNA gene of Bacillus isolated from the Lithium Triangle Zone. The strains obtained in this study are shown in dark red and the access number is shown in parentheses. The values of bootstrap >50% are shown (1,000 interactions). Exiguobacterium aestuarii was used as outgroup.

According to the first hit of Blastn (NCBI), strain LIBR002 showed 99% 16S rRNA similarity with Bacillus safensis FO-36b and strain LIBR003 with Bacillus altitudinis strain P-10 (100% similarity). The isolates were classified as Gram-positive and their colony morphology showed clear differences. Strain LIBR002 was irregular, with a dry surface and dark brown color, which expanded through agar after 1 week and LIBR003 was circular, with an undulate edge, brilliant surface, and beige color. Further, the cellular morphology of both isolates was classified as round-ended cylinders (Figure 4). Additionally, the microbial cells of LIBR003 strain were linked by a matrix (Figure 4B), in contrast to LIBR002 cells (Figure 4A), which were unconnected.

FIGURE 4
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Figure 4. Visualization of Bacillus sp., strains from lithium brines by Scanning Electron Microscopy (SEM). (A) LIBR002 strain; (B) LIBR003 strain.

Salinity Effects on Microbial Growth

The presence of lithium in the culture medium had an important effect on the growth of bacterial cells. On average, the presence of lithium (0.72 M Li+) doubled the generation time of strain LIBR002, and increased generation times by 1.5 times in strain LIBR003 (Figure 5), compared to lithium-free conditions. When lithium concentrations were increased to 1.44 M, generation times increased 3.6 and 2.7 times in strains LIBR002 and LIBR003, respectively. Under the highest lithium concentrations (2.88 and 7.2 M), no growth was observed in either of the strains. Although both isolates were able to grow in presence of lithium, they were also able to growth without this cation (0 M Li).

FIGURE 5
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Figure 5. Microbial growth of isolates LIBR002 and LIBR003 indifferent LiCl and NaCl concentrations. Values are mean ± standard error of the mean of experiments (SEM). The trend lines are represented as solid lines.

In our experimental assessment of the effects of differential saline conditions on microbial growth, both isolates showed the lowest generation time under condition 4 (Figure 5). Later, the generation time of strain LIBR002 were increased by minutes for conditions 5, and 1, and increased by 1 h under condition 2. Conversely, in strain LIBR003, the generation time increased by at least 1 h under conditions 1, 2, and 5. Therefore, growth was worse under condition 3, where lithium/sodium concentrations were highest, increasing the generation time by 7 for strain LIBR002, and by 5.8 times for strain LIBR003 when compared to optimum growth.

Both isolates were able to grow at temperatures between 20°C and 45°C (Supplementary Figures S1, S2 and Supplementary Table S1). However, for both strains, optimum growth was attained at 37°C, and growth was lowest at 20°C. There was no evidence that either strains required NaCl for growth (4.65 for LIBR002 and 5.34 h for LIBR003) (Supplementary Figures S1, S2 and Supplementary Table S2). However, strain LIBR002 showed the lowest generation time at a NaCl concentration of 0.34 M, and LIBR003 at 0.17 M NaCl. Furthermore, the isolates studied here could be classified as slightly tolerant strains, according to the halotolerant classification (Larsen, 1986), as growth was apparent at 0 M NaCl. Neither isolate grew at pH 2, but growth was observed at pH 3 and 4 in the LIBR002 strain (Supplementary Figures S1, S2 and Supplementary Table S3). Optimal growth was observed at pH 6 for strain LIBR002, and pH 5 for strain LIBR003 – hence they can be classified as either neutrophile (Madigan et al., 2008) and moderately acidophile (Johnson, 2008), respectively.

Fatty Acid Profiles

Five different fatty acids were identified in each bacterial strain (Table 1). Myristoleic acid was the most abundant in both strains (LIBR002 = 16.87 ± 6.7 ppm and LIBR003 = 15.36 ± 3.2 ppm). The minor fatty acids concentrations recorded from LIBR002 included palmitoleic (6.05 ± 2.0 ppm), palmitic (2.34 ± 1.6 ppm), oleic (1.72 ± 0.5 ppm), and myristic acid (1.36 ± 1.3 ppm). Fatty acids found in lower concentrations in LIBR003 included palmitic (4.45 ± 1.7 ppm), margaric (3.53 ± 1.3 ppm), palmitoleic (2.52 ± 0.9 ppm), and pentadecanoic acid (1.98 ± 0.7 ppm). Margaric and pentadecanoic acids were not present in LIBR002, and myristic and oleic acids were not recorded from LIBR003.

TABLE 1
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Table 1. Fatty acid composition of species of Bacillus of lithium brines.

Metabolic and Enzymatic Characterization of Isolates

The isolates from lithium concentrated brines showed metabolic differences according to Biolog GEN III MicroPlateTM comparisons (See Supplementary Table S4). Both isolates were able to use a range of substrates as carbon sources: Citric Acid, L-Malic Acid, D-Trehalose, D- Cellobiose, β-Methyl-D-Glucoside, D-Salicin, α-D-glucose, D-mannitol, L-Aspartic Acid, L-Glumamic Acid and Pectin. Strain LIBR002 could use the following as carbon sources: L-Lactic Acid, Sucrose, D-Mannose, D-Fructose, D-Sorbitol, Glycerol, D-Turanose, D-Galacturonic Acid, D-Gluconic Acid and L-Galactonic Acid Lactone. Carbon sources specific to strain LIBR003 included D-Aspartic Acid, Quinic Acid, Gentibiose, Methyl Piruvate, γ-Amino-Butryric Acid, L-Serine, Bromo Succinic Acid. The chemical sensitivity of these strains is detailed in Supplementary Table S4.

Both isolates show the following enzyme activity Enterase, Enterase-Lipase, Valine arylamidase and Naphthol-AS-BI-phosphohydrolase (Supplementary Table S5). The LIBR002 strain displayed specific metabolic machinery including Leucine arylamidase, Cysteine arylamidase, Acid phosphatase, β-glucosidase and N-acetyl-β-glucosaminidase, while the LIBR003 strain showed metabolic activity with α-chymotrypsin and Trypsin.

Discussion

Industrial lithium brines from Salar de Atacama (Chile) can be considered as an extreme and unusual saline environment (total salinity 556 g/L; 11.7 M LiCl), and we report the isolation of two lithium tolerant (able to grow up to 1.44 M Li) Bacillus strains from these brines. Saline (i.e., NaCl-associated) environments are typically considered as restrictive, where only halotolerant and halophile taxa that due to specific adaptations can counter the presence of various ions, and live (Zahran, 1997). Such microorganisms are often classified according to their NaCl requirements for growth (Kushner, 1978; Tiquia et al., 2007). Conversely, organisms able to grow in high lithium concentrations are classified as lithium-tolerant. A limited group of bacteria are known to be tolerant of high lithium concentrations (up to 1 M Li): Micrococcus varians ssp. Halophilus (1.5 M Li; Kamekura and Onishi, 1982), Rhodococcus sp., A5wh (1 M Li; Belfiore et al., 2018), Staphylococcus sciuri strain LCHXa (1 M Li; Vilo et al., 2019) and Bacillus- species (1.42 M; Martínez et al., 2018). According to current knowledge, lithium does not play a vital function in microbial cells (Aral and Vecchio-Sadus, 2008), however, it has been reported an inhibitor effect in lactic acid bacteria (Lapierre et al., 1992). We showed that lithium has considerable effect on isolates, decreasing growth and increasing generation time at lower lithium concentrations (0.72 M Li). Bacteriostatic effects, such as inhibition of growth (Nemeth et al., 2015) in lithium-tolerant strains (free-living bacteria), has not been examined in depth, although it is apparent that direct contact in liquid media increases the sensitivity of tolerant microorganisms, even more than that seen with solid media (Majzlik et al., 2011; Martínez et al., 2018; Vilo et al., 2019). LiCl as well as MgCl2 are classified as chaotropic solutes that reduce the electrostatic interaction between water molecules and biological macromolecules (by hydrogen bonding) (Cray et al., 2013), resulting in macromolecule destabilization (e.g., proteins) through the denaturation of tertiary and quaternary structure, triggering the inhibition of microbial growth (Hallsworth et al., 2003; Williams and Hallsworth, 2009; Cray et al., 2013). This thermodynamically non-favorable effect has been reported in Pseudomonas putida at 0.5 M of LiCl, a concentration that inhibited 50% of growth (Hallsworth et al., 2003) – similar to the growth of our Bacillus-cultures exposed to minimum lithium concentrations (0.72 M). Genomic expression in the presence of chaotropic solutes includes the up-regulation of proteins involved in the stabilization of proteins in thermodynamically non-favorable conditions (e.g., HtpG, DnaK, and GroEL) (Hallsworth et al., 2003), and overexpression has also been reported in lithium-tolerant bacteria such as Rhodococcus sp., (Belfiore et al., 2018). Additionally, the high concentration of lithium in concentrated brines (11.7 M LiCl; Cubillos et al., 2018) could explain the extended time required (months) to obtain viable-cultures, as has been previously described for obtaining successful cultures from a brine lake with high concentrations of MgCl2 (Hallsworth et al., 2007). Experimental studies have shown that many extremely halophilic microorganisms can grow in NaCl-saturated solutions up to 5 M NaCl (aw = 0.755), and that a small number can replicate at lower water activities in MgCl2-rich brines (Stevenson et al., 2015; Lee et al., 2018). Whereas we did not measure the water activity of lithium-concentrated brines (Cubillos et al., 2018), we believe that the 11.7 M Li+ brine would also exhibit a water activity considerably below 0.755.

The phylogeny of NaCl-associated Bacillus – (halophile, moderately halophile, and halotolerant groups) showed that lithium-tolerance isolates are located in two monophyletic groups, apart from NaCl-associated organisms (Figure 2). To date, all lithium-tolerant isolates obtained from the Lithium Triangle Zone are reported as also being NaCl-tolerant (Rodríguez-Contreras et al., 2013; Martínez et al., 2018) and could be related phylogenetically (Figure 3). This phylogenetic separation between the lithium-associated taxa from the other NaCl-associated taxa may indicate that NaCl-tolerance could allow the survival of these microorganisms in habitats with other saline stressors, including lithium brines, with respect to halophile, moderately halophile and halotolerant organisms. It has been reported that some halotolerant organisms, including Bacillus show increased content of acidic amino acids in surface proteins in the absence or presence of NaCl, in contrast to surface proteins of thermophiles which display abundant acid and basic amino acid residues (Fukuchi et al., 2003; Martínez et al., 2018).

The maximum concentrations of NaCl reported to support growth of Bacillus-spp to date is 20% salinity (Lim et al., 2006). Here, we show that this microbial group can also grow in at high concentrations of salts other than NaCl, namely LiCl. Although we showed an increase in generation time in the isolates in the presence of lithium (in comparison without lithium), the substitution of salts could help the survival of microorganisms, as reported from the growth of halophiles (Kamekura and Onishi, 1982). Generation time decreased considerably in cells grown in balanced concentrations of sodium/lithium ions (Na+/Li+; TgLIBR002 = 4.34 ± 0.02 and TgLIBR003 = 4.73 ± 0.02 h), and cultures were only grown in the presence of lithium (Li+; TgLIBR002 = 10.68 ± 0.45 and TgLIBR003 = 8.27 ± 0.21 h). Nevertheless, when both cations had concentrations >1 M, generation time increased considerably (Na+/Li+; TgLIBR002 = 30.87 ± 7.76 and TgLIBR003 = 27.61 ± 0.67 h). This increase of generation time could reflect that at low lithium concentrations, this cation could accumulate intracellularly, whereas at high NaCl concentration (3 M), accumulation is reduced (Tanjasiri et al., 2013). This balance has also been reported to counter biological stress associated with chaotropic, through the use of kosmotropic solutes (such as NaCl) (Hallsworth et al., 2003; Cray et al., 2013; Rubin et al., 2017). Consequently, we suggest that the inhibition effects of lithium is not exclusive to lactic microorganisms, but can be countered by a balance of sodium cations in the culture medium, though its growth will be lower than that shown in cells under optimal growth conditions (Williams and Hallsworth, 2009; Cray et al., 2015).

The fatty acid composition present in cellular membranes is a useful tool for bacterial systematic classification (Komagata and Susuki, 1987), as a viability marker (Sephton et al., 2013) and to determine microbial diversity in hypersaline environments (Ventosa and Ventosa, 2004). The fatty acid profiles of both isolates showed high concentration of membrane unsaturated fatty acids (LIBR002 = 87%; LIBR003 = 64%). Saturated (LIBR002 = 7:1; LIBR003 = 2:1) fatty acids would likely be crucial as a survival mechanism to counter lithium stress. The degree of unsaturated fatty acids and fluidity decrease (to gel state) in extremophile membranes have both been considered as adaptation mechanisms under high hydrostatic pressure (DeLong and Yayanos, 1985), high and low temperature (Koynova et al., 1997; Sakamoto and Murata, 2002) and high salinity (Turk et al., 2003). Furthermore the fatty acids reported from the Bacillus genus have been classified as six branched (anteiso-C15, anteiso-C17, iso-C14, iso-C16, and iso-C17) and normal (nC14 – n-C16) (Kaneda, 1967), where the saturated fatty acids are shared with our isolates (Table 1). Unsaturated fatty acids reported from Bacillus membranes include cis5, cis8, cis10, and cis9 (Kaneda, 1977), where the latter being more abundant in our isolates (Table 1). An increase in unsaturated fatty acids (Heipieper et al., 1992; Hallsworth et al., 2003) and the reduction of membrane permeability in non-lithium tolerant Pseudomonas aeruginosa by downregulation of the outer membrane protein F have been reported as mechanisms to counter chaotropic effects (Yoshimura and Nikaido, 1982; Hallsworth et al., 2003). In consequence, chaotropic effects, high viscosity (26 times more than water; Cubillos et al., 2018), high salinity (556 g/L) and the high lithium concentrations (11.7 M LiCl) present in brines likely limit the optimal microbial growth of bacteria inhabiting this unusual environment. Nevertheless, the fluidity change of cell membranes could aid survival allowing a niche for microbial life and growth.

Both isolates were classified as Bacillus-like organisms and slightly halotolerant. Despite considerable heterogeneity seen in the 16S rRNA gene of Bacillus genus (Ash et al., 1991), Firmicutes was one of the phylum dominant in the concentrated brines (Cubillos et al., 2018). Further, according to the Kaneda classification (Kaneda, 1977), both isolates have a high proportion of unsaturated FAs, therefore can be classified in a third group with psychrotolerant species (Diomandé et al., 2015). It is important to mention that these fatty acid profiles are, to our knowledge, the first microbial description of lithium-associated Bacillus reported to date.

Salar de Atacama and its brines, especially concentrated brines, can be considered as poly-extreme environments, with conditions generally considered unfavorable for life, i.e., presence of chaotropic solute as main salt LiCl (11.7 M), high salinity (556 g/L), high evaporation rates (3,700 mm/year), high solar radiation (6.3 × 106 cal/ m2 day) and very low average precipitation rates (10 mm/year) (Alonso and Risacher, 1996; Garcés, 1998; Garret, 2004; Cubillos et al., 2018). As such, as expected we only obtained spore-forming bacteria (Bacillus). This reflects the fact that endospore-forming Firmicutes are favored in habitats with multiple environmental limiting factors (Filippidou et al., 2016), and that these organisms generate spores in response to saline-stress (Garabito et al., 1998). Spores are recognized as the hardiest form of life on Earth reported to date, and represent a highly successful strategy for the survival and dispersal of microbial life (Nicholson et al., 2000). Some members of the Bacillus genus are widely known as spore-forming bacteria (Nicholson et al., 2000) with spores displaying cryptobiosis over extremely long durations (Gest and Mandelstam, 1987). This has permitted the isolation of Bacillus from ancient sources including amber (Greenblatt et al., 1999), salt deposits (Dombrowski, 1963), and 250 million-year-old salt crystals (Vreeland et al., 2000). As such, we suggest that spore-production represents an adaptation mechanism allowing survival under saline-stress that extends beyond NaCl: furthermore, lithium can produce a semi-vegetative state in Bacillus, as reported in the Halobacteriaceae (a markedly reduced ATP content) (Nicholson et al., 2000), as well as a dormant state described from environments with high concentrations of chaotropic solutes such as MgCl2 (Hallsworth et al., 2007). Additionally, as bacterial abundance is usually negatively correlated with total salts in a given environment (Ragab, 1993), this likely explains the low cellular abundance we observed in lithium concentrated-brines (data not shown).

In some environments, the presence of extreme physical parameters lead to inhospitable conditions for life, including oxidizing agents, desiccation, elevated ultraviolet, and γ-radiation: Bacillus spores however, are characteristically tolerant to such conditions (Link et al., 2004; Crawford, 2005). This capacity has led to Bacillus spores to be included as models for the study of interplanetary transfer of microorganisms (Nicholson and Schuerger, 2005). The habitability of planets or extra-terrestrial environments is typically restricted to the presence of liquid water (Marion et al., 2003), extending potential habitats to brines or salty oceans on Mars (Benison and Bowen, 2006), Europa (Marion et al., 2003; Hand and Carlson, 2015) and Enceladus (Thomas et al., 2016). However, chaotropicity in soils or brines from these celestial bodies has to be considered. Chaotropic solutes can modify microbial diversity e.g., in brines of Salar de Uyuni (MgCl2; Rubin et al., 2017) and Salar de Atacama (LiCl; Cubillos et al., 2018), and could even limit microbial life by reducing the water activity and destabilization of macromolecules (Hallsworth et al., 2003, 2007; Williams and Hallsworth, 2009).

Temperature, chaotropicity, and lower water activity, among other parameters could be used to define the biophysical limits of microbial life on Earth (Lee et al., 2018). Nevertheless, the chaotropicity of brines has been considered one of the most crucial parameters affecting the development of life on Earth (Williams and Hallsworth, 2009; Rubin et al., 2017). In this context, the search for microbial life on Mars should be focused on: (1) halophile or halotolerant organisms from brines extending beyond NaCl, given that Martian-brines may exhibit different chemical compositions to terrestrial brines affecting their habitability (Fox-Powell et al., 2016) and (2) microorganisms that exhibit chaotolerant or chaophilic characteristics to resist under chaotropic conditions (Williams and Hallsworth, 2009; Lee et al., 2018). In conclusion, the habitability of an hypothetic extreme-ecosystem (extra and/or terrestrial) must be evaluated from a viewpoint that includes biological (microbial diversity or isolates), chemical-physical (salinity, temperature, pH, among others), and biophysical (water activity, chaotropicity, and ionic strength) parameters (Stevenson et al., 2015; Lee et al., 2018) that potentially could permit the germination of spores and subsequent growth of well-adapted cells, as reported here.

Ecology of Lithium Triangle Zone Salares

The majority of halotolerant strains used in phylogenetic analysis of this study were isolated from saline sources (79%). Nevertheless, the remaining strains were isolated from a wide range of habitats including ginseng fields, the intestinal tract of animals and sand. Our lithium-tolerant Bacillus strains were obtained from concentrated lithium brines following an industrial process – in order to determine their natural origin, it is necessary to consider the dispersion of endospores. It is not clear from the literature whether obtaining Bacillus-strains reflects their presence in a given environment or their elevated capacity for dispersion and adaptation by spores to shift from a state of dormancy to activity, under favorable conditions (Alcaraz et al., 2010). Nevertheless, the transport of spores from one location (i.e., isolation source) to another as product of dust or winds should not be discounted. The feathers of birds like pelicans (Kemp et al., 2018) or flamingos (Yim et al., 2015) could also be considered as mechanical carriers (also to microbial vectors) to transport microbial cells from different habitats. In the Puna zone, where Salar de Atacama, Salar de Hombre Muerto, and Salar de Uyuni are located, three flamingo species are abundant, Phoenicopterus chilensis (Chilean), P. jamensis (James’s) and P. andinus (Andean) (Hurlbert and Chang, 1983). It has been reported that large-bodied taxa (as flamingos) can alter bacterial communities, through dispersion or modifying nutrient concentrations (Jude, 2018). Further, the exclusion of flamingos through industrial activities such as mining can produce shifts in the distribution and abundance of many taxa including diatoms, amoebas, ciliates, and nematodes (Hurlbert and Chang, 1983).

Lithium in Early Earth: The Possible-Molecular Fossils of Lithium-Organisms

Lithium has two potential origins: as a product of the Big Bang (13.5 billion years ago) or by nuclear reactions induced by energetic cosmic rays in the interstellar medium (Hernanz, 2015). The origin and early development of the Sun and Earth was from the protosolar nebula (4.55 billion years ago) was violent (Robert, 2002). The exact time that life originated on early Earth it is not yet fully known, although there are suggestions that the first life that appeared 3,500 Ma was a prokaryotic chemoautotrophic and anaerobic bacteria (Cavoise et al., 1983). However, this remains controversial, with some workers suggesting an earlier origin for life (Ushikubo et al., 2008).

The Hadean Eon is Earth’s earliest geological epoch (4,560 Ma). Following impacts from extra-terrestrial bodies and the presence of magma oceans, surface temperatures (226–230°C) allowed the vaporization of oceans, resulting in a dense steam atmosphere (Cavosie et al., 2007). Later, reduced surface temperatures (70°C) and the rise of the oceans, resulted in the Archean (4,600 Ma) (Valley et al., 2002; Cavosie et al., 2005, 2007). The oldest terrestrial materials of Hadean-Archean transition (Sleep, 2010) reported to date, are zircons from Jack Hills (Australia) with an age up 4,000 Ma (Ushikubo et al., 2008). These materials are metasedimentary rocks (ZrSiO4) and their elemental composition provides chemical clues to conditions during this part of Earth’s geological history (Ushikubo et al., 2008). Trace elements include uranium, thorium, hafnium and lithium (Sleep, 2010), with the last potentially being crucial for Earth’s history. The highest lithium concentrations of the oldest zircons (up to 49 ppm), compared to younger zircons (2 ppb Li) suggests that their parent magmas incorporated materials from the Earth surface and interacted with liquid water at low temperature (Valley et al., 2002; Ushikubo et al., 2008), similar to decrease of nitrate in Mars surfaces product of chemistry atmospheric shift (Navarro-González et al., 2018). The Li isotope ratios of these zircons supports the idea of existence of a continental crust and oceans that (given the result of the current study) provided potential habitat for microbial life from 4,300 Ma or even earlier (Ushikubo et al., 2008). Therefore, life may have arose in or around the rocks, instead of relying on photosynthesis at the surface (Gaucher et al., 2010). Conversely, this eon was characterized by a period of frequent impacts by asteroids and meteorites, particularly during a period referred to as the late heavy bombardment (3,800–4,100 Ma). Although these events may have had marked negative effects on prehistoric life, it is likely that thermophilic organisms survived (Sleep, 2010). To determine the habitability of early Earth, biosignatures or molecular fossils must be found (Sleep, 2010). In this context, chemo-fossils were reported from zircons, and were described as colonies of unknown and diminutive organisms (Bell et al., 2015). Such early microbial life would be reliant on the presence of adaptations to permit survival under early extreme environments, including the high lithium concentrations present in zircons. In consequence, it is possible that this first life form was ancestral to current lithium-tolerant microorganisms. Although, this cannot be confirmed here, genomic analysis of modern lithium-tolerant organisms (such as our isolates) could potentially provide key information regarding crucial and ancient process of evolution.

Conclusion

In conclusion, we report the isolation of two bacterial species from one of the most hypersaline environments described to date on Earth (total salinity = 556 g/L), where lithium chloride is the principal salt. Furthermore, we established the bacteriostatic effects of lithium on the microbial cells and we suggest that the NaCl-tolerance, generation of spores and fluidity change of membrane of Bacillus could be keys to survive in this poly-extreme environment, as reported elsewhere (Filippidou et al., 2019). The information detailed here is likely relevant to the search for microbial life in planets and other celestial bodies with surficial salt-lakes or brines that provide a potential niche for microbial life. In consequence, these fragile salar ecosystems (salares), known as the Lithium Triangle Zone, must be protected, due at they are base or support of large food chain from animals (flamingos), going through microscopic eukaryotes (ciliates and amoebas), and microbial life (as archaea and bacteria organisms).

Data Availability

Publicly available datasets were analyzed in this study. This data can be found here: https://www.ncbi.nlm.nih.gov.

Author Contributions

CFC prepared the samples for analyses and designed the experiment protocols. CFC, CY, JP, and DV performed the experiment. ES was responsible for the figure production. CFC and AP wrote most of the manuscript. MG and CD contributed with the writing of the manuscript. CD was obtained funding for this study. All authors read and approved the final version of the manuscript.

Funding

This work was supported by the Chilean National Commission for Scientific and Technological Research Scholarship for Doctoral Studies (CONICYT-PCHA/Doctorado Nacional/2014–21140165) to CFC, the National Commission for Scientific and Technological Research (FONDECYT 1181773; Centre CeBiB FB 0001) to CD, and the NEXER (Network for Extreme Environment Research) MINEDUC – Universidad de Antofagasta, Project ANT1856. This manuscript was partially done during a stay of CD in the University of Exeter, United Kingdom funded by the MINEDUC-UA project ANT1855.

Conflict of Interest Statement

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Acknowledgments

We gratefully acknowledge Pablo Aguilar and Dr. Pedro Vargas for valuable comments and Natali Zamora for technical assistance. We thank Chris Harrod and Rodrigo Arriaza for English corrections. We deeply acknowledge Dr. Christian Hacker of the Bioimaging Centre of University of Exeter for SEM support and Dr. Tom Richards for hosting CD at the University of Exeter. We also thank to reviewers for their valuable comments and suggestions.

Supplementary Material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmicb.2019.01611/full#supplementary-material

Footnotes

  1. ^ https://www.ncbi.nlm.nih.gov

References

Alcaraz, L. D., Moreno-Hagelsieb, G., Eguiarte, L. E., Souza, V., Herrera-Estrella, L., and Olmedo, G. (2010). Understanding the evolutionary relationships and major traits of Bacillus through comparative genomics. BMC Genomics 11:332. doi: 10.1186/1471-2164-11-332

PubMed Abstract | CrossRef Full Text | Google Scholar

Alonso, H., and Risacher, F. (1996). Geoquimica del Salar de Atacama, part 1: origen de los componentes y balance salino and salt balance. Rev. Geol. Chile 23, 113–122. doi: 10.5027/andgeoV23n2-a01

CrossRef Full Text | Google Scholar

Amoozegar, M. A., Bagheri, M., Didari, M., Mehrshad, M., Schumann, P., Spröer, C., et al. (2014). Aquibacillus halophilus gen. nov., Sp. nov., A moderately halophilic bacterium from a hypersaline lake, And reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov. Int. J. Syst. Evol. Microbiol. 64, 3616–3623. doi: 10.1099/ijs.0.065375-0

PubMed Abstract | CrossRef Full Text | Google Scholar

Amoozegar, M. A., Bagheri, M., Makhdoumi, A., Nikou, M. M., Fazeli, S. A. S., Schumann, P., et al. (2016). Oceanobacillus halophilus sp. nov., a novel moderately halophilic bacterium from a hypersaline lake. Int. J. Syst. Evol. Microbiol. 66, 1317–1322. doi: 10.1099/ijsem.0.000952

PubMed Abstract | CrossRef Full Text | Google Scholar

An, J. W., Kang, D. J., Tran, K. T., Kim, M. J., Lim, T., and Tran, T. (2012). Hydrometallurgy recovery of lithium from Uyuni salar brine. Hydrometallurgy 117–118, 64–70. doi: 10.1016/j.hydromet.2012.02.008

CrossRef Full Text | Google Scholar

Aral, H., and Vecchio-Sadus, A. (2008). Toxicity of lithium to humans and the environment. Ecotoxicol. Environ. Saf. 70, 349–356. doi: 10.1016/j.ecoenv.2008.02.026

PubMed Abstract | CrossRef Full Text | Google Scholar

Ash, C., Farrow, J. A. E., Wallbanks, S., and Collins, M. D. (1991). Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett. Appl. Microbiol. 13, 202–206. doi: 10.1111/j.1472-765X.1991.tb00608.x

CrossRef Full Text | Google Scholar

Bagheri, M., Didari, M., Amoozegar, M. A., Schumann, P., Sánchez-Porro, C., Mehrshad, M., et al. (2012). Bacillus iranensis sp. nov., a moderate halophile from a hypersaline lake. Int. J. Syst. Evol. Microbiol. 62, 811–816. doi: 10.1099/ijs.0.030874-0

PubMed Abstract | CrossRef Full Text | Google Scholar

Banciu, H. L., and Muntyan, M. S. (2015). Adaptive strategies in the double-extremophilic prokaryotes inhabiting soda lakes. Curr. Opin. Microbiol. 25, 73–79. doi: 10.1016/j.mib.2015.05.003

PubMed Abstract | CrossRef Full Text | Google Scholar

Belfiore, C., Curia, M., and Farías, M. (2018). Characterization of Rhodococcus sp. A5wh isolated from a high altitude Andean lake to unravel the survival strategy under lithium stress. Rev. Argent. Microbiol. 50, 311–322. doi: 10.1016/j.ram.2017.07.005

PubMed Abstract | CrossRef Full Text | Google Scholar

Bell, E. A., Boehnke, P., Harrison, T. M., and Mao, W. L. (2015). Potentially biogenic carbon preserved in a 4.1 billion-year-old zircon. Proc. Natl. Acad. Sci. U.S.A. 112, 14518–14521. doi: 10.1073/pnas.1517557112

PubMed Abstract | CrossRef Full Text | Google Scholar

Benison, K. C. (2008). Life and death around acid-saline lakes. Palaios 23, 571–573. doi: 10.2110/palo.2008.s05

CrossRef Full Text | Google Scholar

Benison, K. C. (2019). The physical and chemical sedimentology of two high-altitude acid salars in Chile: sedimentary processes in an extreme environment. J. Sediment. Res. 89, 147–167. doi: 10.2110/jsr.2019.9

CrossRef Full Text | Google Scholar

Benison, K. C., and Bowen, B. B. (2006). Acid saline lake systems give clues about past environments and the search for life on Mars. Icarus 183, 225–229. doi: 10.1016/j.icarus.2006.02.018

CrossRef Full Text | Google Scholar

Cavoise, A., Valley, J., and Wilde, S. (1983). Evolutionary and geologic consequences of organic carbon fixing in the primitive anoxic ocean. Geology 11, 141–145. doi: 10.1130/0091-7613198311<141:EAGCOO>2.0.CO;2

CrossRef Full Text | Google Scholar

Cavosie, A. J., Valley, J. W., and Wilde, S. A. (2005). Magmatic δ18O in 4400–3900 Ma detrital zircons: a record of the alteration and recycling of crust in the Early Archean. Earth Planet. Sci. Lett. 235, 663–681. doi: 10.1016/j.epsl.2005.04.028

CrossRef Full Text | Google Scholar

Cavosie, A. J., Valley, J. W., and Wilde, S. A. (2007). The oldest terrestrial mineral record: a review of 4400 to 4000 ma detrital zircons from jack hills, Western Australia. Dev. Precambr. Geol. 15, 91–111. doi: 10.1016/s0166-2635(07)15025-8

CrossRef Full Text | Google Scholar

Cohn, F. (1872). Untersuchungen über Bakterien. Beit. Biol. Pflanz. 1, 127–224.

Google Scholar

Crawford, R. L. (2005). Microbial diversity and its relationship to planetary protection. Appl. Environ. Microbiol. 71, 4163–4168. doi: 10.1128/AEM.71.8.4163-4168.2005

PubMed Abstract | CrossRef Full Text | Google Scholar

Cray, J. A., Russell, J. T., Timson, D. J., Singhal, R. S., and Hallsworth, J. E. (2013). A universal measure of chaotropicity and kosmotropicity. Environ. Microbiol. 15, 287–296. doi: 10.1111/1462-2920.12018

PubMed Abstract | CrossRef Full Text | Google Scholar

Cray, J. A., Stevenson, A., Ball, P., Bankar, S. B., Eleutherio, E. C. A., Ezeji, T. C., et al. (2015). Chaotropicity: a key factor in product tolerance of biofuel-producing microorganisms. Curr. Opin. Biotechnol. 33, 228–259. doi: 10.1016/j.copbio.2015.02.010

PubMed Abstract | CrossRef Full Text | Google Scholar

Cubillos, C. F., Aguilar, P., Grágeda, M., and Dorador, C. (2018). Microbial communities from the world’s largest lithium reserve, Salar de Atacama, Chile: life at high LiCl concentrations. J. Geophys. Res. Biogeosci. 123, 3668–3681. doi: 10.1029/2018JG004621

CrossRef Full Text | Google Scholar

DeLong, E. F., and Yayanos, A. (1985). Adaptation of the membrane lipids of a deep-sea bacterium to changes in hydrostatic pressure. Science 228, 1101–1103. doi: 10.1126/science.3992247

PubMed Abstract | CrossRef Full Text | Google Scholar

Dickson, J. L., Head, J. W., Levy, J. S., and Marchant, D. R. (2013). Don Juan Pond, Antarctica: near-surface CaCl2-brine feeding Earth’s most saline lake and implications for Mars. Sci. Rep. 3:1166. doi: 10.1038/srep01424

PubMed Abstract | CrossRef Full Text | Google Scholar

Diomandé, S. E., Nguyen-The, C., Guinebretière, M. H., Broussolle, V., and Brillard, J. (2015). Role of fatty acids in Bacillus environmental adaptation. Front. Microbiol. 6:813. doi: 10.3389/fmicb.2015.00813

PubMed Abstract | CrossRef Full Text | Google Scholar

Dombrowski, H. (1963). Bacteria From Paleozoic Salt Deposits. Ann. N. Y. Acad. Sci. 108, 453–460. doi: 10.1111/j.1749-6632.1963.tb13400.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792–1797. doi: 10.1093/nar/gkh340

PubMed Abstract | CrossRef Full Text | Google Scholar

Filippidou, S., Junier, T., Wunderlin, T., Kooli, W. M., Palmieri, I., Al-Dourobi, A., et al. (2019). Adaptive strategies in a poly-extreme environment: differentiation of vegetative cells in Serratia ureilytica and resistance to extreme conditions. Front. Microbiol. 10:102. doi: 10.3389/fmicb.2019.00102

PubMed Abstract | CrossRef Full Text | Google Scholar

Filippidou, S., Wunderlin, T., Junier, T., Jeanneret, N., Dorador, C., Molina, V., et al. (2016). A combination of extreme environmental conditions favor the prevalence of endospore-forming firmicutes. Front. Microbiol. 7:1707. doi: 10.3389/fmicb.2016.01707

PubMed Abstract | CrossRef Full Text | Google Scholar

Fox-Powell, M. G., Hallsworth, J. E., Cousins, C. R., and Cockell, C. S. (2016). Ionic strength is a barrier to the habitability of Mars. Astrobiology 16, 427–442. doi: 10.1089/ast.2015.1432

PubMed Abstract | CrossRef Full Text | Google Scholar

Fukuchi, S., Yoshimune, K., Wakayama, M., Moriguchi, M., and Nishikawa, K. (2003). Unique amino acid composition of proteins in halophilic bacteria. J. Mol. Biol. 327, 347–357. doi: 10.1016/S0022-2836(03)00150-5

PubMed Abstract | CrossRef Full Text | Google Scholar

Garabito, M. J., Márquez, M., and Ventosa, A. (1998). Halotolerant Bacillus diversity in hypersaline environments. Can. J. Microbiol. 44, 95–102. doi: 10.1139/cjm-44-2-95

CrossRef Full Text | Google Scholar

Garcés, I. (1998). La industria del litio en chile. Rev. Min. 23, 1–261.

Google Scholar

Garret, D. E. (2004). Handbook of Lithium and Natural Calcium Chloride, Their Deposits, Processing, Uses and Properties. Amsterdam: Elsevier.

Google Scholar

Gaucher, E. A., Kratzer, J. T., and Randall, R. N. (2010). Deep phylogeny — how a tree can help characterize early life on earth. Spring 2, 1–16. doi: 10.1101/cshperspect.a002238

PubMed Abstract | CrossRef Full Text | Google Scholar

Gest, H., and Mandelstam, J. (1987). Longevity of microorganisms in natural environments. Microbiol. Sci. 4, 69–71.

PubMed Abstract | Google Scholar

Greenblatt, C., Davis, A., Clement, B. G., Kitts, C. L., Cox, T., and Cano, R. J. (1999). Diversity of microorganisms isolated from amber. Microb. Ecol. 38, 58–68. doi: 10.1007/s002489900153

PubMed Abstract | CrossRef Full Text | Google Scholar

Habashi, F. (1997). Handbook of Extractive Metallurgy. Weinheim: Wiley-Vch.

Google Scholar

Haferburg, G., Gröning, J. A. D., Schmidt, N., Kummer, N. A., Erquicia, J. C., and Schlömann, M. (2017). Microbial diversity of the hypersaline and lithium-rich Salar de Uyuni, Bolivia. Microbiol. Res. 199, 19–28. doi: 10.1016/j.micres.2017.02.007

PubMed Abstract | CrossRef Full Text | Google Scholar

Hallsworth, J., Yakimov, M., Golyshin, P., Gillion, J., D’auria, G., de Lima Alves, F., et al. (2007). Limits of life in MgCl 2 -containing environments: chaotropicity defines the window. Environ. Microbiol. 9, 801–813. doi: 10.1111/j.1462-2920.2006.01212.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Hallsworth, J. E., Heim, S., and Timmis, K. N. (2003). Chaotropic solutes cause water stress in Pseudomonas putida. Environ. Microbiol. 5, 1270–1280. doi: 10.1111/j.1462-2920.2003.00478.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Hand, K. P., and Carlson, R. W. (2015). Europa’s surface color suggests an ocean rich with sodium chloride. Geophys. Res. Lett. 42, 3174–3178. doi: 10.1002/2015GL063559

CrossRef Full Text | Google Scholar

Heipieper, H. J., Diefenbach, R., and Keweloh, H. (1992). Conversion of cis unsaturated fatty acids to trans, a possible mechanism for the protection of phenol-degrading Pseudomonas putida P8 from substrate toxicity. Appl. Environ. Microbiol. 58, 1847–1852.

PubMed Abstract | Google Scholar

Hernanz, M. (2015). A lithium-rich stellar explosion. Nature 518, 307–308. doi: 10.1038/518307a

PubMed Abstract | CrossRef Full Text | Google Scholar

Hurlbert, S. H., and Chang, C. C. Y. (1983). Ornitholimnology: effects of grazing by the Andean flamingo (Phoenicoparrus andinus). Proc. Natl. Acad. Sci. U.S.A. 80, 4766–4769. doi: 10.1073/pnas.80.15.4766

PubMed Abstract | CrossRef Full Text | Google Scholar

Imhoff, J. F., Sahl, H. G., Soliman, G. S. H., and Trüper, H. G. (1979). The wadi natrun: chemical composition and microbial mass developments in alkaline brines of eutrophic desert lakes. Geomicrobiol. J. 1, 219–234. doi: 10.1080/01490457909377733

CrossRef Full Text | Google Scholar

Israelian, G., Santos, N. C., Mayor, M., and Rebolo, R. (2004). Lithium in stars with exoplanets. Astron. Astrophys. 611, 601–611. doi: 10.1051/0004-6361

CrossRef Full Text | Google Scholar

Johnson, D. B. (2008). Biodiversity and interactions of acidophiles: key to understanding and optimizing microbial processing of ores and concentrates. Trans. Nonferrous Met. Soc. China 18, 1367–1373. doi: 10.1016/S1003-6326(09)60010-8

CrossRef Full Text | Google Scholar

Jones, B. E., Grant, W. D., Duckworth, A. W., and Owenson, G. G. (1998). Microbial diversity of soda lakes. Extremophiles 2, 191–200. doi: 10.1007/s007920050060

PubMed Abstract | CrossRef Full Text | Google Scholar

Jude, B. A. (2018). A Flamboyance of (Flamingo) Microbes. Limnol. Oceanogr. Bull. 27, 123–124. doi: 10.1002/lob.10267

CrossRef Full Text | Google Scholar

Kamekura, M., and Onishi, H. (1982). Cell-associates cations of the moserate halophile Micrococcus varians ssp. halophilus grown in media og high concentrations og LiCl, NaCl, KCl, RbCl, or CsCl. Can. J. Microbiol. 28, 155–161. doi: 10.1139/m82-020

CrossRef Full Text | Google Scholar

Kaneda, T. (1967). Fatty acids in the genus Bacillus I. Iso-and anteiso-fatty acids as characteristic constituents of lipids in 10 species. J. Bacteriol. 93, 894–903.

PubMed Abstract | Google Scholar

Kaneda, T. (1977). Fatty acids of the genus Bacillus: an example of branched-chain preference. Bacteriol. Rev. 41, 391–418.

Google Scholar

Kemp, B., Tabish, E., Wolford, A., Jones, D., Butler, J., and Baxter, B. (2018). The biogeography of great salt lake halophilic archaea: testing the hypothesis of avian mechanical carriers. Diversity 10:124. doi: 10.3390/d10040124

CrossRef Full Text | Google Scholar

Koch, R. (1876). Die Aetiologie der Milzbranded-Krankheit, begrundet auf die Entwicklungsgeschichete Bacillus Anthracis. Beit. Biol. Pflanz. 2, 277–310.

Google Scholar

Komagata, K., and Susuki, K. (1987). Lipid and cell-wall systematics in bacterial systematics. Methods Microbiol. 19, 161–207. doi: 10.1016/s0580-9517(08)70410-0

CrossRef Full Text | Google Scholar

Koynova, R., Brankov, J., and Tenchov, B. (1997). Modulation of lipid phase behavior by kosmotropic and chaotropic solutes. Eur. Biophys. J. 25, 261–274. doi: 10.1007/s002490050038

PubMed Abstract | CrossRef Full Text | Google Scholar

Kristjánsson, J. K., and Hreggvidsson, G. O. (1995). Ecology and habitats of extremophiles. World J. Microbiol. Biotechnol. 11, 17–25. doi: 10.1007/BF00339134

PubMed Abstract | CrossRef Full Text | Google Scholar

Kszos, L., Beauchamp, J., and Stewart, A. (2003). Toxicity of lithium to three freshwater organisms and the antagonistic effect of sodium. Ecotoxicology 12, 427–437. doi: 10.1023/A:1026160323594

PubMed Abstract | CrossRef Full Text | Google Scholar

Kumar, S., Stecher, G., and Tamura, K. (2016). MEGA7: molecular evolutionary genetics analysis version 7. Mol. Biol. Evol. 33, 1870–1874. doi: 10.1093/molbev/msw054

PubMed Abstract | CrossRef Full Text | Google Scholar

Kurita, N., and Funabashi, M. (1984). Growth-inhibitory effect on fungi of alkali cations and monovalent inorganic anions and antagonism among different alkali cations. Agric. Biol. Chem. 48, 887–893. doi: 10.1080/00021369.1984.10866259

CrossRef Full Text | Google Scholar

Kushner, D. J. (1978). “Life in high salt and solute concentrations: halophilic bacteria,” in Microbial Life in Extreme Environments, (London: Academic Press), 317–368.

Google Scholar

Lapierre, L., Undeland, P., and Cox, L. J. (1992). Lithium Chloride-Sodium Propionate Agar for the Enumeration of Bifidobacteria in Fermented Dairy Products. J. Dairy Sci. 75, 1192–1196. doi: 10.3168/jds.S0022-0302(92)77866-7

PubMed Abstract | CrossRef Full Text | Google Scholar

Larsen, H. (1986). Halophilic and halotolerant microorganisms-an overview and historical perspective. FEMS Microbiol. Lett. 39, 3–7. doi: 10.1016/0378-1097(86)90053-4

CrossRef Full Text | Google Scholar

Lee, C. J. D., McMullan, P. E., O’Kane, C. J., Stevenson, A., Santos, I. C., Roy, C., et al. (2018). NaCl-saturated brines are thermodynamically moderate, rather than extreme, microbial habitats. FEMS Microbiol. Rev. 42, 672–693. doi: 10.1093/femsre/fuy026

PubMed Abstract | CrossRef Full Text | Google Scholar

Li, H. R., Liu, W. M., Cheng, S. J., and Jiang, Y. (2014). Effect of lithium on growth process of environmental microorganism by microcalorimetry and SEM. Adv. Mater. Res. 955-959, 445–449. doi: 10.4028/www.scientific.net/amr.955-959.445

CrossRef Full Text | Google Scholar

Lieb, J. (2004). The immunostimulating and antimicrobial properties of lithium and antidepressants. J. Infect. 49, 88–93. doi: 10.1016/j.jinf.2004.03.006

PubMed Abstract | CrossRef Full Text | Google Scholar

Lim, J. M., Jeon, C. O., Lee, S. M., Lee, J. C., Xu, L. H., Jiang, C. L., et al. (2006). Bacillus salarius sp. nov., a halophilic, spore-forming bacterium isolated from a salt lake in China. Int. J. Syst. Evol. Microbiol. 56, 373–377. doi: 10.1099/ijs.0.63678-0

PubMed Abstract | CrossRef Full Text | Google Scholar

Link, L., Sawyer, J., Venkateswaran, K., and Nicholson, W. (2004). Extreme spore UV resistance of Bacillus pumilus isolates obtained from an ultraclean spacecraft assembly facility. Microb. Ecol. 47, 159–163. doi: 10.1007/s00248-003-1029-4

PubMed Abstract | CrossRef Full Text | Google Scholar

Logan, N. A., and De Vos, P. (2015). “Bacillus,” in Bergey’s Manual of Systematics of Archaea and Bacteria, ed. W. B. Whitman (Hoboken, NJ: John Wiley & Sons).

Google Scholar

Lorenzini, G. C. (2012). Estudo da transferência de oxigênio em cultivo de Bacillus megaterium. J. Appl. Microbiol. 114, 1378–1387.

Google Scholar

Madigan, M. T., Martinko, J. M., Dunlap, P. V., and Clark, D. P. (2008). Brock Biology of Microorganisms, 12th Edn. Boston: Pearson.

Google Scholar

Maheshwari, D. K., and Saraf, M. (2015). Halophiles: Biodiversity and Sustainable Exploitation. Berlin: Springer.

Google Scholar

Majzlik, P., Strasky, A., Adam, V., Nemec, M., Trnkova, L., Zehnalek, J., et al. (2011). Influence of zinc(II) and copper(II) ions on Streptomyces bacteria revealed by electrochemistry. Int. J. Electrochem. Sci. 6, 2171–2191. doi: 10.1098/rsbl.2007.0067

PubMed Abstract | CrossRef Full Text | Google Scholar

Makhdoumi-Kakhki, A., Amoozegar, M. A., and Ventosa, A. (2012). Halovenus aranensis gen. nov., sp. nov., an extremely halophilic archaeon from Aran-Bidgol salt lake. Int. J. Syst. Evol. Microbiol. 62, 1331–1336. doi: 10.1099/ijs.0.031419-0

PubMed Abstract | CrossRef Full Text | Google Scholar

Marion, G. M., Fritsen, C. H., Eicken, H., and Payne, M. C. (2003). The search for life on europa: limiting environmental factors, potential habitats, and earth analogues. Astrobiology 3, 785–811. doi: 10.1089/153110703322736105

PubMed Abstract | CrossRef Full Text | Google Scholar

Martínez, F. L., Orce, I. G., Rajal, V. B., and Irazusta, V. P. (2018). Salar del Hombre Muerto, source of lithium-tolerant bacteria. Environ. Geochem. Health 41, 529–543. doi: 10.1007/s10653-018-0148-2

PubMed Abstract | CrossRef Full Text | Google Scholar

Morris, E. O. (ed.) (2004). “Yeast growth,” in Brewing Science and Practice, (Washington, DC: Academic Press Inc), 469–508. doi: 10.1533/9781855739062.469

CrossRef Full Text | Google Scholar

Nacif, F., and Lacabana, M. (2015). ABC Del Litio Sudamericano. Buenos Aires: Atuel y Cara o Ceca.

Google Scholar

Navarro-González, R., Navarro, K., Coll, P., McKay, C., Stern, J., Sutter, B., et al. (2018). Abiotic input of fixed nitrogen by bolide impacts to gale crater during the Hesperian: insights from the Mars science laboratory. J. Geophys. Res. Planets 124, 94–113. doi: 10.1029/2018je005852

CrossRef Full Text | Google Scholar

Nemeth, J., Oesch, G., and Kuster, S. P. (2015). Bacteriostatic versus bactericidal antibiotics for patients with serious bacterial infections: systematic review and meta-analysis. J. Antimicrob. Chemother. 70, 382–395. doi: 10.1093/jac/dku379

PubMed Abstract | CrossRef Full Text | Google Scholar

Nicholson, W., and Schuerger, A. (2005). Bacillus subtilis spore survival and expression of germination-induced bioluminescence after prolonged incubation under simulated mars atmospheric pressure and composition: implications for planetary protection and lithopanspermia. Astrobiology 5, 536–544. doi: 10.1089/ast.2005.5.536

PubMed Abstract | CrossRef Full Text | Google Scholar

Nicholson, W. L., Munakata, N., Horneck, G., Melosh, H. J., and Setlow, P. (2000). Resistance of bacillus endospores to extreme terrestrial and extraterrestrial environments. Microbiol. Mol. Biol. Rev. 64, 548–572. doi: 10.1016/j.tplants.2014.05.005

PubMed Abstract | CrossRef Full Text | Google Scholar

Orellana, R., Macaya, C., Bravo, G., Dorochesi, F., Cumsille, A., Valencia, R., et al. (2018). Living at the frontiers of life: extremophiles in chile and their potential for bioremediation. Front. Microbiol. 9:2309. doi: 10.3389/fmicb.2018.02309

PubMed Abstract | CrossRef Full Text | Google Scholar

Oren, A., Gurevich, P., Gemmell, R. T., and Teske, A. (1995). Halobaculum gomorrense gen. nov., sp. nov., a novel extremely halophilic archaeon from the Dead Sea. Int. J. Syst. Evol. Microbiol. 45, 747–754. doi: 10.1099/00207713-45-4-747

PubMed Abstract | CrossRef Full Text | Google Scholar

Payne, J. I., Sehgal, S. N., and Gibbons, N. E. (2010). Immersion refractometry of some halophilic bacteria. Can. J. Microbiol. 6, 9–15. doi: 10.1139/m60-002

CrossRef Full Text | Google Scholar

Peoples, L. M., and Bartlett, D. H. (2017). “Ecogenomics of Deep-Ocean Microbial Bathytypes,” in Microbial Ecology of Extreme Environments, eds C. Chénard and F. Lauro (Cham: Springer), 7–50. doi: 10.1007/978-3-319-51686-8_2

CrossRef Full Text | Google Scholar

Perez-Fernandez, C. A., Iriarte, M., Hinojosa-Delgadillo, W., Veizaga-Salinas, A., Cano, R. J., Rivera-Perez, J., et al. (2016). First insight into microbial diversity and ion concentration in the Uyuni salt flat, Bolivia. Caribb. J. Sci. 49, 57–75. doi: 10.18475/cjos.v49i1.a6

CrossRef Full Text | Google Scholar

Ragab, M. (1993). “Distribution pattern of soil microbial population in salt-affected soils,” in Owards Rational use of High Salinity Tolerant Plants, Deliberations about Hight Salinity Tolerant Plants and Ecosystems, eds H. Tin Leth and A. A. Al Masoom (Dordrecht: Springer), 467–472. doi: 10.1007/978-94-011-1858-3_48

CrossRef Full Text | Google Scholar

Ravel, J., and Fraser, C. M. (2005). Genomics at the genus scale. Trends Microbiol. 13, 95–97. doi: 10.1016/j.tim.2005.01.004

PubMed Abstract | CrossRef Full Text | Google Scholar

Robert, F. (2002). The Origin of water on Earth. Science 293, 1056–1058. doi: 10.1126/science.1064051

PubMed Abstract | CrossRef Full Text | Google Scholar

Rodríguez-Contreras, A., Koller, M., de Sousa Dias, M. M., Calafell, M., Braunegg, G., and Marqués-Calvo, M. S. (2013). Novel poly[(R)-3-hydroxybutyrate]-producing bacterium isolated from a bolivian hypersaline lake. Food Technol. Biotechnol. 51, 123–130. doi: 10.1039/b816556d

CrossRef Full Text | Google Scholar

Rodriguez-Valera, F., Juez, G., and Kushner, D. J. (1983). Halobacterium mediterranei spec, nov., a new carbohydrate-utilizing extreme Halophile. Syst. Appl. Microbiol. 4, 369–381. doi: 10.1016/S0723-2020(83)80021-6

PubMed Abstract | CrossRef Full Text | Google Scholar

Rodriguez-Valera, F., Ventosa, A., Juez, G., and Imhoff, J. F. (1985). Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern. Microb. Ecol. 11, 107–115. doi: 10.1007/BF02010483

PubMed Abstract | CrossRef Full Text | Google Scholar

Rubin, S. S., Marin, I., Gomez, M. J., Morales, E. A., Zekker, I., San Martin, P., et al. (2017). Prokaryotic diversity and community composition in the Salar de Uyuni, a large scale, chaotropic salt flat. Environ. Microbiol. 19, 1–41. doi: 10.1111/1462-2920

PubMed Abstract | CrossRef Full Text | Google Scholar

Sakamoto, T., and Murata, N. (2002). Regulation of the desaturation of fatty acids and its role in tolerance to cold and salt stress. Curr. Opin. Microbiol. 5, 206–210. doi: 10.1016/S1369-5274(02)00306-5

PubMed Abstract | CrossRef Full Text | Google Scholar

Samylina, O. S., Sapozhnikov, F. V., Gainanova, O. Y., Ryabova, A. V., Nikitin, M. A., and Sorokin, D. Y. (2014). Algo-bacterial communities of the Kulunda steppe (Altai Region, Russia) Soda Lakes. Microbiology 83, 849–860. doi: 10.1134/S0026261714060162

PubMed Abstract | CrossRef Full Text | Google Scholar

Sass, A. M., McKew, B. A., Sass, H., Fichtel, J., Timmis, K. N., and McGenity, T. J. (2008). Diversity of Bacillus-like organisms isolated from deep-sea hypersaline anoxic sediments. Saline Systems 4:8. doi: 10.1186/1746-1448-4-8

PubMed Abstract | CrossRef Full Text | Google Scholar

Sasser, M. (1987). Identification of bacteria by gas chromatography. Forum Mikrobiol. 10, 341–343.

Google Scholar

Schneegurt, M. A. (2012). “Media and conditions for the growth of halophilic and halotolerant bacteria and archaea,” in Advances in Understanding the Biology of Halophilic Microorganisms (Dordrecht: Springer), 35–58.

Google Scholar

Sephton, M. A., Sims, M. R., Court, R. W., Luong, D., and Cullen, D. C. (2013). Searching for biomolecules on Mars: considerations for operation of a life marker chip instrument. Planet. Space Sci. 86, 66–74. doi: 10.1016/j.pss.2013.04.016

CrossRef Full Text | Google Scholar

Sleep, N. H. (2010). The Hadean-Archaean environment. Cold Spring Harb. Perspect. Biol. 2:a002527. doi: 10.1101/cshperspect.a002527

PubMed Abstract | CrossRef Full Text | Google Scholar

Stackebrandt, E., and Liesack, W. (1993). “Nucleic acids and classification,” in Handbook of new Bacterial Systematics, eds M. Goodfellow and A. G. O’Donnell (London: Academic Press).

Google Scholar

Stevenson, A., Cray, J. A., Williams, J. P., Santos, R., Sahay, R., Neuenkirchen, N., et al. (2015). Is there a common water-activity limit for the three domains of life? ISME J. 9, 1333–151. doi: 10.1038/ismej.2014.219

PubMed Abstract | CrossRef Full Text | Google Scholar

Sugahara, I., Hayashi, K., Kimura, T., and Jinno, C. (1983). Studies on marine bacteria producing lytic enzymes-IX: effect of inorganic salts on the autolysis of bacterial cells capable of producing lytic enzyme. Bull. Fac. Fish. Mie Univ. 10, 33–39.

Google Scholar

Tahil, W. (2007). The trouble with lithium. Implications of future PHEV production for lithium demand. Meridian Int. Res. Available at: http://www.meridian-int-res.com/Projects/Lithium_Problem_2.pdf

Google Scholar

Tanjasiri, S. P., Lew, R., Mouttapa, M., Lipton, R., Lew, L., Has, S., et al. (2013). Environmental influences on tobacco use among Asian American and Pacific islander youth. Health Promot. Pract. 14, 504–544. doi: 10.1177/1524839913484762

CrossRef Full Text | Google Scholar

Thomas, P. C., Tajeddine, R., Tiscareno, M. S., Burns, J. A., Joseph, J., Loredo, T. J., et al. (2016). Enceladus’s measured physical libration requires a global subsurface ocean. Icarus 264, 37–47. doi: 10.1016/j.icarus.2015.08.037

CrossRef Full Text | Google Scholar

Tiquia, S. M., Davis, D., Hadid, H., Kasparian, S., Ismail, M., Sahly, R., et al. (2007). Halophilic and halotolerant bacteria from river waters and shallow groundwater along the Rouge River of southeastern Michigan. Environ. Technol. 28, 297–307. doi: 10.1080/09593332808618789

PubMed Abstract | CrossRef Full Text | Google Scholar

Tsuruta, T. (2005). Removal and recovery of lithium using various microorganisms. J. Biosci. Bioeng. 100, 562–566. doi: 10.1263/jbb.100.562

PubMed Abstract | CrossRef Full Text | Google Scholar

Turk, M., Mejanelle, L., Šentjurc, M., Grimalt, J. O., Gunde-Cimerman, N., and Plemenitaš, A. (2003). Salt-induced changes in lipid composition and membrane fluidity of halophilic yeast-like melanized fungi. Extremophiles 8, 53–61. doi: 10.1007/s00792-003-0360-5

PubMed Abstract | CrossRef Full Text | Google Scholar

Ushikubo, T., Kita, N., Cavosie, A., Wilde, S. A., Rudnick, R., and Valley, J. (2008). Lithium in Jack Hills zircons: evidence for extensive weathering of Earth’s earliest crust. Earth Planet. Sci. Lett. 272, 666–676. doi: 10.1016/j.epsl.2008.05.032

CrossRef Full Text | Google Scholar

Valley, J. W., Peck, W. H., King, E. M., and Wilde, S. A. (2002). A cool early Earth. Geology 30, 351–354. doi: 10.1130/0091-76132002030<0351:ACEE>2.0.CO;2

CrossRef Full Text | Google Scholar

Ventosa, A., and Ventosa, A. (2004). Halophilic Microorganisms. Berlin: Springer.

Google Scholar

Vila, T. (2010). Geología de los depósitos salinos andinos, Provincia de Antofagasta, Chile. Rev. Geol. 2, 41–55. doi: 10.4067/s0719-26812014000200005

CrossRef Full Text | Google Scholar

Vilo, C., Salazar-Ardiles, C., Caimanque, T. N., Dong, Q., Flores, N., Galetoviæ, A., et al. (2019). Draft genome sequence of staphylococcus sciuri strain lchxa, a lithium-tolerant bacterium isolated from Laguna Chaxa, Salar de Atacama, Chile. Microbiol. Resour. Announc. 8, e1549–e1518. doi: 10.1128/MRA.01549-18

PubMed Abstract | CrossRef Full Text | Google Scholar

Vreeland, R. H., Rosenzweig, W. D., and Powers, D. (2000). Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal. Nature 407, 897–900. doi: 10.1038/35038060

PubMed Abstract | CrossRef Full Text | Google Scholar

Wanger, T. C. (2011). The Lithium future-resources, recycling, and the environment. Conserv. Lett. 4, 202–206. doi: 10.1111/j.1755-263X.2011.00166.x

CrossRef Full Text | Google Scholar

Warburg, R. J., Moir, A., and Smith, D. A. (1985). Influence of alkali metal cations on the germination of spores of wild-type and gerD mutants of Bacillus subtilis. Microbiology 131, 221–230. doi: 10.3386/w19846

CrossRef Full Text | Google Scholar

Weisser, J., and Trüper, H. G. (1985). Osmoregulation in a New Haloalkaliphilic Bacillus from the Wadi Natrun (Egypt). Syst. Appl. Microbiol. 6, 7–11. doi: 10.1016/S0723-2020(85)80003-5

CrossRef Full Text | Google Scholar

Wiegel, J., and Canganella, F. (2011). Extremophiles: from abyssal to terrestrial ecosystems and possibly. Naturwissenschaften 98, 253–279. doi: 10.1038/npg.els.0000392

PubMed Abstract | CrossRef Full Text | Google Scholar

Williams, J. P., and Hallsworth, J. E. (2009). Limits of life in hostile environments: no barriers to biosphere function? Environ. Microbiol. 11, 3292–3308. doi: 10.1111/j.1462-2920.2009.02079.x

PubMed Abstract | CrossRef Full Text | Google Scholar

Yakimov, M. M., La Cono, V., Spada, G. L., Bortoluzzi, G., Messina, E., Smedile, F., et al. (2015). Microbial community of the deep-sea brine Lake Kryos seawater-brine interface is active below the chaotropicity limit of life as revealed by recovery of mRNA. Environ. Microbiol. 17, 364–382. doi: 10.1111/1462-2920.12587

PubMed Abstract | CrossRef Full Text | Google Scholar

Yim, K. J., Kwon, J., Cha, I. T., Oh, K. S., Song, H. S., Lee, H. W., et al. (2015). Occurrence of viable, red-pigmented haloarchaea in the plumage of captive flamingoes. Sci. Rep. 5:16425. doi: 10.1038/srep16425

PubMed Abstract | CrossRef Full Text | Google Scholar

Yoshimura, F., and Nikaido, H. (1982). Permeability of Pseudomonas aeruginosa Outer membrane to hydrophilic solutes. J. Bacteriol. 152, 636–642.

PubMed Abstract | Google Scholar

Zahran, H. H. (1997). Diversity, adaptation and activity of the bacterial flora in saline environments. Biol. Fertil. Soils 25, 211–223. doi: 10.1007/s003740050306

CrossRef Full Text | Google Scholar

Zeigler, D. R., and Perkins, J. B. (2015). 27 The Genus Bacillus. New York, NY: CRC Press.

Google Scholar

Keywords: lithium-tolerance, bacteria, halophiles, Bacillus, Lithium Triangle Zone

Citation: Cubillos CF, Paredes A, Yáñez C, Palma J, Severino E, Vejar D, Grágeda M and Dorador C (2019) Insights Into the Microbiology of the Chaotropic Brines of Salar de Atacama, Chile. Front. Microbiol. 10:1611. doi: 10.3389/fmicb.2019.01611

Received: 30 March 2019; Accepted: 27 June 2019;
Published: 11 July 2019.

Edited by:

André Antunes, Edge Hill University, United Kingdom

Reviewed by:

Cristina Sánchez-Porro, University of Seville, Spain
John E. Hallsworth, Queen’s University Belfast, United Kingdom

Copyright © 2019 Cubillos, Paredes, Yáñez, Palma, Severino, Vejar, Grágeda and Dorador. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Carolina F. Cubillos, ccubillosleon@gmail.com; Cristina Dorador, cristina.dorador@uantof.cl

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