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Melanoma genetics/genomics

Editorial ARTICLE

Front. Oncol., 17 December 2013 | https://doi.org/10.3389/fonc.2013.00309

Melanoma genetics/genomics

  • Developmental Genetics and Pathology Laboratory, Department of Pathology, Dunedin School of Medicine, University of Otago, Dunedin, New Zealand

Gene mutations represent a major driving force in the onset and progression of melanoma. Consequently many genes are being investigated for their role in melanomagenesis, including not only inherited genes but also genetic defects that are acquired due to environmental factors, such as excessive sun exposure. The field of melanoma genetics thus encompasses genes in familial melanoma through to non-inherited genes that increase risk of melanoma. Melanoma genomics on the other hand is the study of genomes of melanoma cells and other cell types and their role in melanoma onset and progression. A “genome” includes not only all the genes of a cell, but also any genetic factors involved in programing the cell and its function.

The present volume aims to provide the reader with a snapshot of current genetic and genomic investigations of melanoma, with special emphasis on targeted treatments, and personalized medicine. A collection of Opinion, Review, Primary Research, Hypothesis and Theory, and Methods articles has been assembled that describes the panoply of genes, therapeutic targets, biomarkers, genetic pathways, and pathogenic mechanisms involved in melanoma onset and metastasis, and of clinical outcomes in patient in response to chemotherapy, immunotherapy, and personalized treatment options.

Much progress has been made in identifying individual genes and pathways involved in melanomagenesis, as outlined in the Review Article by Wangari-Talbot and Chen (1). Indeed, the discovery that melanomas frequently contain somatically acquired mutations in the BRAF gene that drive melanoma growth has revolutionized melanoma treatment options, and led to the development of personalized targeted treatments for patients with metastatic melanomas bearing a BRAF mutation, reviewed by Klinac et al. (2).

Despite melanomas harboring somatically acquired mutations in genes like BRAF or NRAS, the response of individual melanoma patients to BRAF inhibitor treatments is very variable, and Stones et al. (3) have investigated gene mutation status with respect to sensitivity to BRAF inhibitors and combination targeted therapies in a panel of New Zealand human melanoma cell lines in their Original Research Article.

Mutations in genes like GNAQ, GNA11, and BAP1 are associated with uveal melanoma or blue nevi, and for the first time Hawkes et al. (4) have investigated in their Original Research Article whether inherited mutations in these genes are associated with familial predisposition to uveal melanoma or blue nevi.

Although BRAF mutations can be identified from the very earliest stages of melanoma onset, targeted BRAF inhibitor therapies are presently validated for use in advanced stage IV melanomas. Could therapies targeting BRAF be successfully used to treat earlier stages of melanoma? This is the subject of an Opinion Article by Ahn and Eccles (5).

With the plethora of genomic information, treatments, and outcome data available from melanoma studies, what is the best way to manage and interrogate all of this burgeoning information? Trevarton et al. (6) describe a web tool integrating multiple sources of genomic information called MelanomaDB in their Methods Article. Then immediately following this is a critique by Reinhold (7) of the advantages and disadvantages of the approach taken by the MelanomaDB article for data integration.

In addition to “driver” mutations in BRAF, and the related growth promoting pathways, other pathways are also very likely to be important in melanoma metastasis, including the Hippo pathway, which is discussed in the Hypothesis and Theory Article by Kim et al. (8).

An Original Research Article by Kim et al. (9) investigates the role of epithelial-mesenchymal transition marker expression in human melanocytes and melanoma cell lines. In a similarly themed article Eccles et al. (10) suggest that switching of melanoma cells from a proliferative to an invasive phenotype during metastasis has parallels with developmental mechanisms, which could be under genetic control. They propose a genetic switch theory, which they hypothesize is involved in the transition of melanoma cells to an invasive phenotype in their Hypothesis and Theory Article.

Biomarkers of melanoma progression and metastasis are expected to help with further stratification of patients with poor prognosis following melanoma diagnosis, as discussed by Dye et al. (11) in their Review Article. Expression of one factor called GLIPR1 was found to correlate with the invasive potential in melanoma cells, as demonstrated in an Original Research Article by Awasthi et al (12).

Metastasis generally involves the dissemination of circulating melanoma cells, as discussed in an Opinion Article by Joshi et al. (13), but frequently melanomas metastasize to the brain, which is discussed in an Opinion Article by Yashin et al. (14). The potential for targeted therapy of melanoma brain metastasis through in vivo modeling and molecular characterization is the subject of a Review Article by Gaziel-Sovran et al. (15).

This collection of articles clearly demonstrates the impact that melanoma genetics and genomics has had on targeted treatments and improved outcomes of melanoma patients in the past decade, and of the promise yet to come, but melanoma remains an important public health issue in Western societies. This is especially so in New Zealand and Australia, where the recorded incidence rates are the highest in the world (41.2 per 100,000 population in New Zealand, age standardized to the Segi world population, 2004, and 37.2 per 100,000 in Australia, as compared to, for example, 11.9 per 100,000 in Western Europe. Clearly much work still needs to be done to address these high incidence and mortality rates of melanoma.

References

1. Wangari-Talbot J, Chen S. Genetics of melanoma. Front Genet (2013) 3:330. doi: 10.3389/fgene.2012.00330

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2. Klinac D, Gray ES, Millward M, Ziman M. Advances in personalized targeted treatment of metastatic melanoma and non-invasive tumor monitoring. Front Oncol (2013) 3:54. doi:10.3389/fonc.2013.00054

Pubmed Abstract | Pubmed Full Text | CrossRef Full Text

3. Stones CJ, Kim JE, Joseph WR, Leung E, Marshall ES, Finlay GJ, et al. Comparison of responses of human melanoma cell lines to MEK and BRAF inhibitors. Front Genet (2013) 4:66. doi:10.3389/fgene.2013.00066

Pubmed Abstract | Pubmed Full Text | CrossRef Full Text

4. Hawkes JE, Campbell J, Garvin D, Cannon-Albright L, Cassidy P, Leachman SA. Lack of GNAQ and GNA11 germ-line mutations in familial melanoma pedigrees with uveal melanoma or blue nevi. Front Oncol (2013) 3:160. doi:10.3389/fonc.2013.00160

Pubmed Abstract | Pubmed Full Text | CrossRef Full Text

5. Ahn A, Eccles MR. Targeted therapy; from advanced melanoma to the adjuvant setting. Front Oncol (2013) 3:205. doi:10.3389/fonc.2013.00205

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6. Trevarton AJ, Mann MB, Knapp C, Araki H, Wren JD, Stones-Havas S, et al. MelanomaDB: a web tool for integrative analysis of melanoma genomic information to identify disease-associated molecular pathways. Front Oncol (2013) 3:184. doi:10.3389/fonc.2013.00184

CrossRef Full Text

7. Reinhold WC. Commentary on “MelanomaDB: a web tool for integrative analysis of melanoma genomic information to identify disease-associated molecular pathways”. Front Genet (2013) 4:156. doi:10.3389/fgene.2013.00156

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8. Kim JE, Finlay GJ, Baguley BC. The role of the Hippo pathway in melanocytes and melanoma. Front Oncol (2013) 3:123. doi:10.3389/fonc.2013.00123

Pubmed Abstract | Pubmed Full Text | CrossRef Full Text

9. Kim JE, Leung E, Baguley BC, Finlay GJ. Heterogeneity of expression of epithelial-mesenchymal transition markers in melanocytes and melanoma cell lines. Front Genet (2013) 4:97. doi:10.3389/fgene.2013.00097

Pubmed Abstract | Pubmed Full Text | CrossRef Full Text

10. Eccles MR, He S, Ahn A, Slobbe LJ, Jeffs AR, Yoon H-S, et al. MITF and PAX3 play distinct roles in melanoma cell migration; outline of a “genetic switch” theory involving MITF and PAX3 in proliferative and invasive phenotypes of melanoma. Front Oncol (2013) 3:229. doi:10.3389/fonc.2013.00229

Pubmed Abstract | Pubmed Full Text | CrossRef Full Text

11. Dye DE, Medic S, Ziman M, Coombe DR. Melanoma biomolecules: independently identified but functionally intertwined. Front Oncol (2013) 3:252. doi:10.3389/fonc.2013.00252

Pubmed Abstract | Pubmed Full Text | CrossRef Full Text

12. Awasthi A, Woolley AG, Lecomte FJ, Hung N, Baguley BC, Wilbanks SM, et al. Variable expression of GLIPR1 correlates with invasive potential in melanoma cells. Front Oncol (2013) 3:225. doi:10.3389/fonc.2013.00225

Pubmed Abstract | Pubmed Full Text | CrossRef Full Text

13. Joshi P, Zborowski M, Triozzi PL. Circulating melanoma cells: scoping the target. Front Oncol (2013) 3:189. doi:10.3389/fonc.2013.00189

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14. Yashin AI, Wu D, Arbeev KG, Kulminski AM, Stallard E, Ukraintseva SV. Why does melanoma metastasize into the brain? Genes with pleiotropic effects might be the key. Front Genet (2013) 4:75. doi:10.3389/fgene.2013.00075

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15. Gaziel-Sovran A, Osman I, Hernando E. In vivo modeling and molecular characterization: a path toward targeted therapy of melanoma brain metastasis. Front Oncol (2013) 3:127. doi:10.3389/fonc.2013.00127

Pubmed Abstract | Pubmed Full Text | CrossRef Full Text

Keywords: melanoma, therapeutic targets, biomarkers, genetic pathways, personalized medicine

Citation: Eccles MR (2013) Melanoma genetics/genomics. Front. Oncol. 3:309. doi: 10.3389/fonc.2013.00309

Received: 28 November 2013; Accepted: 04 December 2013;
Published online: 17 December 2013.

Edited by:

Heather E. Cunliffe, Translational Genomics Research Institute, USA

Copyright: © 2013 Eccles. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: michael.eccles@otago.ac.nz