Technology and Code
Accepted on 21 Nov 2025
Celline: A flexible tool for one-step retrieval and integrative analysis of public single-cell RNA sequencing data
in Single Cell Bioinformatics
Frontiers in Bioinformatics
- 285 views
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15 articles
Original Research
Published on 13 Nov 2025
Comprehensive analysis of multi-omics vaccine response data using MOFA and Stabl algorithms
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1636240
- 868 views
Methods
Published on 18 Sep 2025
Quantitative measures to assess the quality of cellular indexing of transcriptomes and epitopes by sequencing data
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1630161
- 2,197 views
Technology and Code
Published on 05 Sep 2025
TCRscape: a single-cell multi-omic TCR profiling toolkit
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1641491
- 2,280 views
Original Research
Published on 18 Jul 2025
Analysis of histone modifications in key cellular subpopulations in the context of azoospermia using spermatogenic single-cell RNA-seq data
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1626153
- 2,050 views
Original Research
Published on 11 Jun 2025
Optimization of clustering parameters for single-cell RNA analysis using intrinsic goodness metrics
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1562410
- 2,540 views
- 1 citation
Mini Review
Published on 17 Apr 2025
Primer on machine learning applications in brain immunology
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1554010
- 2,967 views
Technology and Code
Published on 12 Feb 2025
Seurat function argument values in scRNA-seq data analysis: potential pitfalls and refinements for biological interpretation
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2025.1519468
- 3,549 views
- 6 citations
Editorial
Published on 08 Oct 2024
Editorial: Women in bioinformatics
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2024.1499514
- 1,761 views
Mini Review
Published on 08 Jul 2024
A systematic overview of single-cell transcriptomics databases, their use cases, and limitations
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2024.1417428
- 9,295 views
- 12 citations
Original Research
Published on 04 Mar 2024
Predicting cell population-specific gene expression from genomic sequence
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2024.1347276
- 4,722 views
- 3 citations
Original Research
Published on 04 Mar 2024
Detecting subtle transcriptomic perturbations induced by lncRNAs knock-down in single-cell CRISPRi screening using a new sparse supervised autoencoder neural network
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2024.1340339
- 3,523 views
- 2 citations
Methods
Published on 10 Aug 2023
Orthogonal outlier detection and dimension estimation for improved MDS embedding of biological datasets
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2023.1211819
- 2,574 views
- 1 citation
Original Research
Published on 15 May 2023
Gene representation in scRNA-seq is correlated with common motifs at the 3′ end of transcripts
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2023.1120290
- 4,820 views
- 2 citations
Original Research
Published on 12 Apr 2023
Gene length is a pivotal feature to explain disparities in transcript capture between single transcriptome techniques
in Single Cell Bioinformatics
Frontiers in Bioinformatics
doi 10.3389/fbinf.2023.1144266
- 4,070 views
- 1 citation