Frontiers in Bioinformatics

Original Research

Published on 26 May 2023

Helix encoder: a compound-protein interaction prediction model specifically designed for class A GPCRs

Haruki Yamane
Takashi Ishida

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1193025

3,153 views
3 citations

Methods

Published on 25 May 2023

ModEx: a general purpose computer model exploration system

Hamid Younesy
Joseph Pober
Torsten Möller
Mohammad M. Karimi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1153800

3,307 views

Original Research

Published on 24 May 2023

Bayesian networks and imaging-derived phenotypes highlight the role of fat deposition in COVID-19 hospitalisation risk

T. Waddell
A. I. L. Namburete
P. Duckworth
N. Eichert
H. Thomaides-Brears
D. J. Cuthbertson
J. P. Despres
M. Brady

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1163430

3,000 views
1 citation

Perspective

Published on 24 May 2023

Network medicine: facilitating a new view on complex diseases

Marija Cvijovic
Annikka Polster

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1163445

3,148 views
6 citations

Brief Research Report

Published on 23 May 2023

BrcaDx: precise identification of breast cancer from expression data using a minimal set of features

Sangeetha Muthamilselvan
Ashok Palaniappan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1103493

4,079 views
5 citations

Editorial

Published on 22 May 2023

Editorial: Protein recognition and associated diseases

M. Michael Gromiha
Petras Kundrotas
Marcelo Adrian Marti
Česlovas Venclovas
Minghui Li

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1215141

1,781 views

Editorial

Published on 19 May 2023

Editorial: Expert opinions in integrative bioinformatics: 2022

Tao Zeng
Chuanchao Zhang

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1218466

1,912 views
2 citations

Original Research

Published on 16 May 2023

Bootstrap confidence for molecular evolutionary estimates from tumor bulk sequencing data

Jared Huzar
Madelyn Shenoy
Maxwell D. Sanderford
Sudhir Kumar
Sayaka Miura

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1090730

2,544 views
2 citations

Original Research

Published on 15 May 2023

Gene representation in scRNA-seq is correlated with common motifs at the 3′ end of transcripts

Xinling Li
Greg Gibson
Peng Qiu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1120290

5,293 views
2 citations

Original Research

Published on 10 May 2023

A graph-based machine learning framework identifies critical properties of FVIII that lead to hemophilia A

Marcos V. Ferreira
Tatiane Nogueira
Ricardo A. Rios
Tiago J. S. Lopes

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1152039

4,025 views
12 citations

Original Research

Published on 09 May 2023

Multimodal AI for prediction of distant metastasis in carcinoma patients

Isaac Olatunji
Feng Cui

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1131021

4,963 views
11 citations

Perspective

Published on 05 May 2023

A brief history of visualizing membrane systems in molecular dynamics simulations

R. A. Corey
M. Baaden
M. Chavent

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1149744

7,356 views
9 citations

Brief Research Report

Published on 28 Apr 2023

Application of annotation-agnostic RNA sequencing data analysis tools for biomarker discovery in liquid biopsy

Gabriel Wajnberg
Eric P. Allain
Jeremy W. Roy
Shruti Srivastava
Daniel Saucier
Pier Morin
Alier Marrero
Colleen O’Connell
Anirban Ghosh
Stephen M. Lewis

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1127661

3,614 views
5 citations

Brief Research Report

Published on 27 Apr 2023

The HRA Organ Gallery affords immersive superpowers for building and exploring the Human Reference Atlas with virtual reality

Andreas Bueckle
Catherine Qing
Shefali Luley
Yash Kumar
Naval Pandey
Katy Börner

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1162723

5,863 views
8 citations

Original Research

Published on 27 Apr 2023

Barcode demultiplexing of nanopore sequencing raw signals by unsupervised machine learning

Daniele M. Papetti
Simone Spolaor
Iman Nazari
Andrea Tirelli
Tommaso Leonardi
Chiara Caprioli
Daniela Besozzi
Thalia Vlachou
Pier Giuseppe Pelicci
Paolo Cazzaniga

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1067113

5,991 views
12 citations

Original Research

Published on 20 Apr 2023

Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events

Arnaud Kress
Olivier Poch
Odile Lecompte
Julie D. Thompson

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1178926

3,748 views
15 citations

Editorial

Published on 13 Apr 2023

Editorial: Artificial intelligence in digital pathology image analysis

Yi Liu
Xiaoyan Liu
Hantao Zhang
Junlin Liu
Chaofan Shan
Yinglu Guo
Xun Gong
Min Tang

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1007986

4,128 views
3 citations

Original Research

Published on 13 Apr 2023

A proof-of-concept pipeline to guide evaluation of tumor tissue perfusion by dynamic contrast-agent imaging: Direct simulation and inverse tracer-kinetic procedures

Irene E. Vignon-Clementel
Nick Jagiella
Jules Dichamp
Jérôme Kowalski
Wiltrud Lederle
Hendrik Laue
Fabian Kiessling
Oliver Sedlaczek
Dirk Drasdo

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.977228

3,237 views
1 citation

Original Research

Published on 12 Apr 2023

Gene length is a pivotal feature to explain disparities in transcript capture between single transcriptome techniques

Ricardo R. Pavan
Fabiola Diniz
Samir El-Dahr
Giovane G. Tortelote

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1144266

4,572 views
2 citations

Original Research

Published on 12 Apr 2023

Molecular modeling, simulation and docking of Rv1250 protein from Mycobacterium tuberculosis

Sumita Choudhary
Anup Kumar Kesavan
Vijay Juneja
Sheetal Thakur

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1125479

8,161 views
22 citations

Original Research

Published on 06 Apr 2023

Orthogonal analysis of variants in APOE gene using in-silico approaches reveals novel disrupting variants

Chang Li
Ian Hou
Mingjia Ma
Grace Wang
Yongsheng Bai
Xiaoming Liu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1122559

3,636 views

Original Research

Published on 05 Apr 2023

Adjustments to the reference dataset design improve cell type label transfer

Carla Mölbert
Laleh Haghverdi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1150099

5,699 views
5 citations

Technology and Code

Published on 30 Mar 2023

EGAsubmitter: A software to automate submission of nucleic acid sequencing data to the European Genome-phenome Archive

Marco Viviani
Marilisa Montemurro
Livio Trusolino
Andrea Bertotti
Gianvito Urgese
Elena Grassi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1143014

3,510 views

Perspective

Published on 29 Mar 2023

The thorny complexities of visualization research for clinical settings: A case study from genomics

Emilia Ståhlbom
Jesper Molin
Anders Ynnerman
Claes Lundström

Frontiers in Bioinformatics

doi 10.3389/fbinf.2023.1112649

2,489 views
1 citation

606 Publications

volumes

Volume 3 - 2023

Helix encoder: a compound-protein interaction prediction model specifically designed for class A GPCRs

ModEx: a general purpose computer model exploration system

Bayesian networks and imaging-derived phenotypes highlight the role of fat deposition in COVID-19 hospitalisation risk

Network medicine: facilitating a new view on complex diseases

BrcaDx: precise identification of breast cancer from expression data using a minimal set of features

Editorial: Protein recognition and associated diseases

Editorial: Expert opinions in integrative bioinformatics: 2022

Bootstrap confidence for molecular evolutionary estimates from tumor bulk sequencing data

Gene representation in scRNA-seq is correlated with common motifs at the 3′ end of transcripts

A graph-based machine learning framework identifies critical properties of FVIII that lead to hemophilia A

Multimodal AI for prediction of distant metastasis in carcinoma patients

A brief history of visualizing membrane systems in molecular dynamics simulations

Application of annotation-agnostic RNA sequencing data analysis tools for biomarker discovery in liquid biopsy

The HRA Organ Gallery affords immersive superpowers for building and exploring the Human Reference Atlas with virtual reality

Barcode demultiplexing of nanopore sequencing raw signals by unsupervised machine learning

Real or fake? Measuring the impact of protein annotation errors on estimates of domain gain and loss events

Editorial: Artificial intelligence in digital pathology image analysis

A proof-of-concept pipeline to guide evaluation of tumor tissue perfusion by dynamic contrast-agent imaging: Direct simulation and inverse tracer-kinetic procedures

Gene length is a pivotal feature to explain disparities in transcript capture between single transcriptome techniques

Molecular modeling, simulation and docking of Rv1250 protein from Mycobacterium tuberculosis

Orthogonal analysis of variants in APOE gene using in-silico approaches reveals novel disrupting variants

Adjustments to the reference dataset design improve cell type label transfer

EGAsubmitter: A software to automate submission of nucleic acid sequencing data to the European Genome-phenome Archive

The thorny complexities of visualization research for clinical settings: A case study from genomics