volumes

Volume 5 - 2025

Original Research

Published on 10 Mar 2025

Urinary based biomarkers identification and genetic profiling in Parkinson’s disease: a systematic review of metabolomic studies

Neetu Rani Dhiman
Surbhi Singh
Royana Singh
Anand Kumar
Varun Kumar Singh
Abhishek Pathak
Rameshwar Nath Chaurasia
Vijay Nath Mishra
Niraj Kumar Srivastava
Swati Sahu

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1513790

3,425 views
5 citations

Data Report

Published on 10 Mar 2025

An extended miRNA repertoire in Rattus norvegicus

Julienne Lehmann
Ali Yazbeck
Jörg Hackermüller
Sebastian Canzler

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1545680

1,440 views
1 citation

Perspective

Published on 10 Mar 2025

A standards perspective on genomic data reusability and reproducibility

Ishi Keenum
Scott A. Jackson
Emiley Eloe-Fadrosh
Lynn M. Schriml

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1572937

2,904 views
3 citations

Brief Research Report

Published on 10 Mar 2025

Improving acne severity detection: a GAN framework with contour accentuation for image deblurring

Philomina Princiya Mascarenhas
M. S. Sannidhan
Ancilla J. Pinto
Dabis Camero
Jason Elroy Martis

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1485797

2,261 views
2 citations

Original Research

Published on 03 Mar 2025

MetaComBin: combining abundances and overlaps for binning metagenomics reads

Francesco Tomasella
Cinzia Pizzi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1504728

2,194 views

Review

Published on 24 Feb 2025

Reliable machine learning models in genomic medicine using conformal prediction

Christina Papangelou
Konstantinos Kyriakidis
Pantelis Natsiavas
Ioanna Chouvarda
Andigoni Malousi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1507448

5,100 views
2 citations

Original Research

Published on 19 Feb 2025

Phytochemical baicalin potentially inhibits Bcl-2 and VEGF: an in silico approach

Vikas Sharma
Arti Gupta
Mohini Singh
Anshul Singh
Anis Ahmad Chaudhary
Zakir Hassain Ahmed
Salah-ud-din Khan
Sarvesh Rustagi
Sanjay Kumar
Sandeep Kumar

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1545353

3,344 views
2 citations

Mini Review

Published on 13 Feb 2025

Unlocking the potential of in silico approach in designing antibodies against SARS-CoV-2

Tasshitra Subramaniam
Siti Aisyah Mualif
Weng Howe Chan
Khairul Bariyyah Abd Halim

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1533983

3,975 views
1 citation

Technology and Code

Published on 12 Feb 2025

Seurat function argument values in scRNA-seq data analysis: potential pitfalls and refinements for biological interpretation

Mikhail Arbatsky
Ekaterina Vasilyeva
Veronika Sysoeva
Ekaterina Semina
Valeri Saveliev
Kseniya Rubina

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1519468

4,427 views
6 citations

Original Research

Published on 06 Feb 2025

Targeting aldose reductase using natural African compounds as promising agents for managing diabetic complications

Miriam E. L. Gakpey
Shadrack A. Aidoo
Toheeb A. Jumah
George Hanson
Siyabonga Msipa
Florence N. Mbaoji
Omonijo Bukola
Palesa C. Tjale
Mamadou Sangare
Hedia Tebourbi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1499255

4,893 views
5 citations

Original Research

Published on 04 Feb 2025

Choosing the most suitable NGS technology to combine with a standardized viral enrichment protocol for obtaining complete avian orthoreovirus genomes from metagenomic samples

Sonsiray Álvarez-Narváez
Telvin L. Harrell
Islam Nour
Sujit K. Mohanty
Steven J. Conrad

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1498921

2,474 views
1 citation

Mini Review

Published on 03 Feb 2025

Machine learning approaches for predicting protein-ligand binding sites from sequence data

Orhun Vural
Leon Jololian

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1520382

8,359 views
4 citations

Original Research

Published on 28 Jan 2025

DNA methylation biomarker analysis from low-survival-rate cancers based on genetic functional approaches

Yi-Hsuan Tsai
Prasenjit Mitra
David Taniar
Tun-Wen Pai

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1523524

3,332 views
1 citation

Original Research

Published on 28 Jan 2025

Integrated bioinformatics analysis to explore potential therapeutic targets and drugs for small cell carcinoma of the esophagus

Maofei Zhu
Yueming Chu
Qiang Yuan
Junfeng Li
Silin Chen
Lin Li

Frontiers in Bioinformatics

doi 10.3389/fbinf.2025.1495052

4,471 views
4 citations

Volume 4 - 2024

Brief Research Report

Published on 29 Jan 2025

End-to-end 3D instance segmentation of synthetic data and embryo microscopy images with a 3D Mask R-CNN

Gabriel David
Emmanuel Faure

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1497539

3,293 views
2 citations

Methods

Published on 23 Jan 2025

A novel lossless encoding algorithm for data compression–genomics data as an exemplar

Anas Al-okaily
Abdelghani Tbakhi

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1489704

3,212 views
1 citation

Original Research

Published on 17 Jan 2025

Innovative CDR grafting and computational methods for PD-1 specific nanobody design

Jagadeeswara Reddy Devasani
Girijasankar Guntuku
Nalini Panatula
Murali Krishna Kumar Muthyala
Mary Sulakshana Palla
Teruna J. Siahaan

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1488331

4,816 views
2 citations

Original Research

Published on 15 Jan 2025

Developing a ceRNA-based lncRNA-miRNA-mRNA regulatory network to uncover roles in skeletal muscle development

Wang Wenlun
Yu Chaohang
Huang Yan
Li Wenbin
Zhou Nanqing
Hu Qianmin
Wu Shengcai
Yuan Qing
Yu Shirui
Zhang Feng

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1494717

4,277 views
2 citations

Original Research

Published on 14 Jan 2025

hsa-miR-548d-3p: a potential microRNA to target nucleocapsid and/or capsid genes in multiple members of the Flaviviridae family

H. W. Cayatineto
S. T. Hakim

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1487292

2,208 views

Brief Research Report

Published on 09 Jan 2025

Detection of reproducible liver cancer specific ligand-receptor signaling in blood

Aram Safrastyan
Damian Wollny

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1332782

2,220 views

Editorial

Published on 07 Jan 2025

Editorial: Multi-omics approaches in the study of human disease mechanisms

Dapeng Wang
Giuseppe Agapito

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1546680

3,138 views
3 citations

Original Research

Published on 06 Jan 2025

In silico identification of chilli genome encoded MicroRNAs targeting the 16S rRNA and secA genes of “Candidatus phytoplasma trifolii”

Vineeta Pandey
Aarshi Srivastava
Ramwant Gupta
Haitham E. M. Zaki
Muhammad Shafiq Shahid
Rajarshi K. Gaur

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1493712

2,553 views
1 citation

Technology and Code

Published on 20 Dec 2024

PRONAME: a user-friendly pipeline to process long-read nanopore metabarcoding data by generating high-quality consensus sequences

Benjamin Dubois
Mathieu Delitte
Salomé Lengrand
Claude Bragard
Anne Legrève
Frédéric Debode

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1483255

8,576 views
10 citations

Opinion

Published on 16 Dec 2024

Unlocking the future of complex human diseases prediction: multi-omics risk score breakthrough

Benson R. Kidenya
Gerald Mboowa

Frontiers in Bioinformatics

doi 10.3389/fbinf.2024.1510352

4,127 views
9 citations