Abstract
The wood-inhabiting fungi play an integral role in wood degradation and the cycle of matter in the ecological system. They are considered as the “key player” in wood decomposition, because of their ability to produce all kinds of enzymes that break down woody lignin, cellulose and hemicellulose. In the present study, three new wood-inhabiting fungal species, Steccherinum fissurutum, S. punctatum and S. subtropicum spp. nov., collected from southern China, are proposed based on a combination of morphological features and molecular evidence. Steccherinum fissurutum is characterized by the resupinate, subceraceous basidiomata with cracked hymenophore, a monomitic hyphal system with clamped generative hyphae and cylindrical basidiospores; S. punctatum is characterized by the annual, punctate basidiomata with leathery hymenophore, cylindrical, strongly encrusted cystidia and ellipsoid basidiospores (3.6–4.5 ×2.6–3.4 µm); S. subtropicum is characterized by its effuse-reflexed basidiomata, a odontioid hymenophore with pink to lilac hymenial surface and ellipsoid basidiospores measuring as (2.8–3.4 × 2.0–2.7 µm). Sequences of ITS and nLSU rRNA markers of the studied samples were generated, and phylogenetic analyses were performed with maximum likelihood, maximum parsimony, and Bayesian inference methods. The ITS+nLSU analysis of the family Steccherinaceae indicated that the three new species clustered into the genus Steccherinum. Based on further analysis of ITS+nLSU dataset, the phylogenetic analysis confirmed that S. subtropicum was sister to S. enuispinum; S. fissurutum formed a monophyletic lineage; S. punctatum grouped with a clade comprised S. straminellum and S. ciliolatum.
Introduction
The phylum Basidiomycota constitute a major group of the kingdom Fungi and is second in species numbers to the phylum Ascomycota (; ; ). Wood-inhabiting fungal is a large group of Basidiomycota with simpler basidiomata with the diverse morphological features, but the phylogenetic diversity of this group is less intensively studied (; ).
The genus Steccherinum Gray (Steccherinaceae, Polyporales), typified by S. ochraceum (Pers. ex J.F. Gmel.) Gray, was established by . It is a cosmopolitan genus characterized by a combination of resupinate to effused-reflexed or pileate basidiome with a membranaceous consistencey, hymenophore odontioid to hydnoid, a dimitic hyphal structure with clamp connections or simple-septate generative hyphae, cystidia numerous, strongly encrusted in the obtuse apex, basidia subclavate and basidiospores hyaline, thin-walled, smooth, ellipsoid to subcylindrical, acyanophilous and negative in Melzer’s reagent (; ; ). So far, about 80 species have been accepted in this genus worldwide (; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; Yuan and Wu, 2012; ; ; ; ; ; ; ). In recent years, several new Steccherinum species were described in China, S. fragile Z.B. Liu & Y.C. Dai, S. hirsutum Y.X. Wu & C.L. Zhao, S. puerense Y.X. Wu, J.H. Dong & C.L. Zhao, S. rubigimaculatum Y.X. Wu, J.H. Dong & C.L. Zhao, S. subcollabens (F. Wu, P. Du & X.M. Tian) Z.B. Liu & Y.C. Dai, S. tenuissimum C.L. Zhao & Y.X. Wu and S. xanthum C.L. Zhao & Y.X. Wu, and S. yunnanense Y.X. Wu & C.L. Zhao (; ; ; ).
Molecular phylogenies have provided increased knowledge concerning the evolution of Steccherinum (; ; ; ; ). Utilizing sequences of the gene regions ITS, nLSU, mtSSU, atp6, rpb2, and tef1, revealed that the phylogeny of the poroid and hydnoid genera Antrodiella Ryvarden and I. Johans., Junghuhnia Corda and Steccherinum (Polyporales, Basidiomycota) grouped together and Steccherinum was shown to contain both hydnoid and poroid species. Using of whole genome sequence data in comparison to extensively sampled multigene datasets indicated that Steccherinum species belonged to the residual polyporoid clade and the generic type (S. ochraceum) was grouped with Junghuhnia nitida (Pers.) Ryvarden (). clarified family-level classification of eighteen families within the order Polyporales (Basidiomycota), which showed that Steccherinum belonged to family Steccherinaceae Parmasto. Westphalen et al. (2018) worked on morphological and multigene analyses of Junghuhnia s.lat., in which a new species Steccherinum neonitidum Westphalen & Tomšovský and three new combinations, S. meridionale (Rajchenb.) Westphalen, Tomšovský & Rajchenberg, S. polycystidiferum (Rick) Westphalen, Tomšovský & Rajchenb. and S. undigerum (Berk. & M.A. Curtis) Westphalen & Tomšovský were reported. provided the morphological and phylogenetic analyses on hydnoid specimens of Steccherinaceae, in which four genera as Cabalodontia Piatek, Etheirodon Banker, Metuloidea G. Cunn., and Steccherinum were introduced and three new neotropical species was found.
Scientific names are important link to communicate biological information across many spheres of use, in which how to publish a new fungal species is recommended to provide DNA barcode sequences in a public repository for the holotype specimen with the barcode locus (ITS) as well as any additional taxa specific secondary barcode loci (). In order to allow BLAST searches to work optimally, sequences of DNA barcodes should include the generally used region for that marker (). Sometimes, this genus Steccherinum for the barcoding gene ITS is less than 97% of nucleotide difference between different species.
The aim of this study is to explore the diversity and phylogeny of Steccherinum in China. During our investigations on the diversity of wood-inhabiting fungi in southern China, three undescribed species were collected from Yunnan Province, and their morphology corresponds to the concept of Steccherinum. To confirm their placement in Steccherinum, morphological examination and phylogenetic analyses based on the internal transcribed spacer (ITS) and large subunit nuclear ribosomal RNA (nLSU) genens, were carried out.
Materials and methods
Morphological studies
The studied specimens are deposited at the herbarium of Southwest Forestry University (SWFC), Yunnan Province, P.R. China (Herbarium numbers: Steccherinum fissurutum: SWFCF00021634, SWFCF00021673, SWFCF00021675, SWFCF00021680, SWFCF00021703, SWFCF00021744, SWFCF00021754, SWFCF00020803, SWFCF00021808, SWFCF00021811, SWFCF00021826, SWFCF00021841; S. punctatum: SWFCF00009181, SWFCF00009184; S. subtropicum: SWFCF00011059, SWFCF00016901). Macromorphological descriptions are based on field notes. was followed for the colour terms. Micromorphological data were obtained from the dried specimens and observed under a light microscope Eclipse E 80i (Nikon, Tokyo) following . The following abbreviations were used for the micro characteristics description: KOH = 5% potassium hydroxide, CB = Cotton Blue, CB– = acyanophilous, IKI = Melzer’s reagent, IKI– = both non-amyloid and non-dextrinoid, L = mean spore length (arithmetic average of all spores), W = mean spore width (arithmetic average of all spores), Q = variation in the L/W ratios between the specimens studied, n (a/b) = number of spores (a) measured from given number (b) of specimens.
Molecular procedures and phylogenetic analyses
CTAB rapid plant genome extraction kit-DN14 (Aidlab Biotechnologies Co., Ltd, Beijing) was used to obtain genomic DNA from dried specimens, according to the manufacturer’s instructions. ITS region was amplified with primer pairs ITS5 and ITS4 (). Nuclear LSU region was amplified with primer pairs LR0R and LR7 (https://sites.duke.edu/vilgalyslab/rdna_primers_for_fungi/ ) Table 1.
Table 1
| Fragment of amplification | Name of primer | Primer base sequence (5′-3′) b | References |
|---|---|---|---|
| ITS | ITS5 | GGA AGT AAA AGT CGT AAC AAG G | |
| ITS4 | TCC TCC GCT TAT TGA TAT GC | ||
| nLSU | LR0R | ACC CGC TGA ACT TAA GC | http://www.biology.duke.edu/fungi/mycolab/primers.htm |
| LR7 | TAC TAC CAC CAA GAT CT |
A list of genes, primers and primer sequences used in this study.
degenerate base: R = A or G, Y = C or T, N = A or T or C or G, V = G or A.
The PCR procedure for ITS was as follows: initial denaturation at 95°C for 3 min, followed by 35 cycles at 94°C for 40 s, 58°C for 45 s and 72°C for 1 min, and a final extension of 72°C for 10 min. The PCR procedure for nLSU was as follows: initial denaturation at 94°C for 1 min, followed by 35 cycles at 94°C for 30 s, 48°C 1 min and 72°C for 1.5 min, and a final extension of 72°C for 10 min. The PCR products were purified and sequenced at Kunming Tsingke Biological Technology Limited Company, Kunming, Yunnan Province, P.R. China. All newly generated sequences were deposited at GenBank (Table 2).
Table 2
| Species Name | Sample No. | GenBank Accession No. | References | |
|---|---|---|---|---|
| ITS | nLSU | |||
| Antella americana | KHL 11949 | JN710509 | JN710509 | |
| A. americana | HHB-4100 | KP135316 | KP135196 | |
| A. chinensis | Dai 8874 | JX110843 | KC485541 | |
| A. chinensis | Dai 9019 | JX110844 | KC485542 | |
| A. niemelaei | Renvall 3218 | AF126876 | — | |
| A. niemelaei | Haikonen 14727 | AF126877 | — | |
| Antrodiella onychoides | Miettinen 2312 | JN710517 | JN710517 | |
| A. pallescens | Nordén 8.8.2008 | JN710518 | JN710518 | |
| A. romellii | Miettinen 7429 | JN710520 | JN710520 | |
| A. semisupina | Labrecque & Labbé 372 | JN710521 | JN710521 | |
| A. stipitata | FD-136 | KP135314 | KP135197 | |
| A. stipitata | Yuan 5640 | KC485525 | KC485544 | |
| Atraporiella neotropica | Miettinen X1021 | HQ659221 | HQ659221 | |
| A. yunnanensis | CLZhao 604 | MF962482 | MF962485 | Wu et al., 2017 |
| A. yunnanensis | CLZhao 605 | MF962483 | MF962486 | Wu et al., 2017 |
| Butyrea japonica | MN 1065 | JN710556 | JN710556 | |
| B. luteoalba | FP-105786 | KP135320 | KP135226 | |
| B. luteoalba | KHL 13238b | JN710558 | JN710558 | |
| Climacocystis borealis | KHL 13318 | JN710527 | JN710527 | |
| Elaphroporia ailaoshanensis | CLZhao 596 | MG231572 | MG748855 | |
| E. ailaoshanensis | CLZhao 597 | MG231847 | MG748856 | |
| Etheirodon fimbriatum | KHL 11905 | JN710530 | JN710530 | |
| E. fimbriatum | HR 98811 | MT849300 | — | |
| E. purpureum | MCW 642/18 | MT849301 | MT849301 | |
| Flaviporus brownii | MCW 362/12 | KY175008 | KY175008 | |
| F. brownie | X 462 | JN710538 | JN710538 | |
| F. liebmannii | X 249 | JN710539 | JN710539 | |
| F. liebmannii | Yuan 1766 | KC502914 | — | |
| F. subundatus | MCW 367/12 | KY175004 | KY175004 | |
| F. subundatus | MCW 457/13 | KY175005 | KY175005 | |
| F. tenuis | MCW 442/13 | KY175001 | KY175001 | |
| F. tenuis | MCW 356/12 | KY175002 | KY175002 | |
| Frantisekia fissiliformis | CBS 435.72 | MH860521 | MH872232 | |
| F. mentschulensis | BRNM 710170 | FJ496670 | FJ496728 | |
| F. mentschulensis | AH 1377 | JN710544 | JN710544 | |
| F. ussurii | Wei 3081 | KC485527 | KC485545 | |
| F. ussurii | Dai 8249 | KC485526 | — | |
| Irpex lacteus | DO 421/951208 | JX109852 | JX109852 | |
| Junghuhnia crustacea | X 262 | JN710553 | JN710553 | |
| J. delicate | MCW 564/17 | MT849295 | MT849295 | |
| J. delicate | MCW 693/19 | MT849297 | MT849297 | |
| J. pseudocrustacea | Yuan 6160 | MF139551 | — | |
| J. pseudocrustacea | Zhou 283 | MF139552 | — | |
| Loweomyces fractipes | X 1149 | JN710570 | JN710570 | |
| L. fractipes | MT 13/2012 | KX378866 | KX378866 | |
| L. spissus | MCW 488/14 | KX378869 | KX378869 | |
| L. tomentosus | MCW 366/12 | KX378870 | KX378870 | |
| L. wynneae | X 1215 | JN710604 | JN710604 | |
| Metuloidea cinnamomea | X 1228 | KU926963 | — | |
| M. fragrans | LE 295277 | KC858281 | — | |
| M. murashkinskyi | X 449 | JN710588 | JN710588 | |
| M. reniformis | MCW 542/17 | MT849303 | MT849303 | |
| M. reniformis | MCW 523/17 | MT849302 | MT849302 | |
| M. rhinocephala | X 460 | JN710562 | JN710562 | |
| Mycorrhaphium hispidum | MCW 363/12 | MH475306 | MH475306 | |
| M. hispidum | MCW 429/13 | MH475307 | MH475307 | |
| M. subadustum | Yuan 12976 | MW491378 | MW488040 | |
| M. subadustum | Dai 10173 | KC485537 | KC485554 | |
| Nigroporus stipitatus | KaiR 116 | MT110231 | MT110231 | |
| N. vinosus | MQN 015 | AB811861 | AB811861 | |
| N. vinosus | X 839 | JN710575 | JN710575 | |
| Steccherinum autumnale | Spirin 2957 | JN710549 | JN710549 | |
| S. bourdotii | HR99893 | MT849311 | ||
| S. bourdotii | Saarenoksa 10195 | JN710584 | JN710584 | |
| S. ciliolatum | Ryvarden 47033 | JN710585 | JN710585 | |
| S. collabens | KHL 11848 | JN710552 | JN710552 | |
| S. fissurutum | CLZhao 21803 * | OP799385 | OP799397 | Present study |
| S. fissurutum | CLZhao 21841 | OP799388 | OP799400 | Present study |
| S. fissurutum | CLZhao 21808 | OP799386 | OP799398 | Present study |
| S. fissurutum | CLZhao 21675 | OP799380 | OP799392 | Present study |
| S. fissurutum | CLZhao 21811 | OP799389 | OP799399 | Present study |
| S. fissurutum | CLZhao 21680 | OP799381 | OP799393 | Present study |
| S. fissurutum | CLZhao 21703 | OP799382 | OP799394 | Present study |
| S. fissurutum | CLZhao 21744 | OP799383 | OP799395 | Present study |
| S. fissurutum | CLZhao 21826 | OP799387 | — | Present study |
| S. fissurutum | CLZhao 21634 | OP799378 | — | Present study |
| S. fissurutum | CLZhao 21673 | OP799379 | — | Present study |
| S. fissurutum | CLZhao 21754 | OP799384 | OP799396 | Present study |
| S. fragile | Dai 19972 | MW364629 | MW364627 | |
| S. fragile | Dai 20479 | MW364628 | MW364626 | |
| S. hirsutum | CLZhao 4222 | MW290040 | MW290054 | |
| S. hirsutum | CLZhao 4523 | MW290041 | MW290055 | |
| S. larssonii | MCW 593/17 | MT849306 | MT849306 | |
| S. larssonii | MCW 594/17 | MT849307 | MT849307 | |
| S. meridionalis | MR 10466 | KY174994 | KY174994 | |
| S. meridionalis | MR 284 | KY174992 | KY174992 | |
| S. neonitidum | MCW 371/12 | KY174990 | KY174990 | |
| S. neonitidum | RP 79 | KY174991 | KY174991 | |
| S. nitidum | KHL 11903 | JN710560 | JN710560 | |
| S. nitidum | MT 33/12 | KY174989 | KY174989 | |
| S. ochraceum | KHL11902 | JN710590 | JN710590 | |
| S. ochraceum | 2060 | JN710589 | JN710589 | |
| S. polycystidiferum | RP 140 | KY174996 | KY174996 | |
| S. polycystidiferum | MCW 419/12 | KY174995 | KY174995 | |
| S. pseudozilingianum | Kulju 1004 | JN710561 | JN710561 | |
| S. puerense | CLZhao 3122 | MW682341 | — | |
| S. puerense | CLZhao 3644 | MW682342 | MW682338 | |
| S. punctatum | CLZhao 9181 | OP799375 | OP799401 | Present study |
| S. punctatum | CLZhao 9184 * | OP799376 | OP799402 | Present study |
| S. robustius | G1195 | JN710591 | JN710591 | |
| S. rubigimaculatum | CLZhao 4069 | MW682343 | MW682339 | |
| S. rubigimaculatum | CLZhao 10638 | MW682344 | MW682340 | |
| S. straminellum | KHL 13849 | JN710597 | JN710597 | |
| S. subcollabens | Dai 19344 | MN871758 | MN877771 | |
| S. subcollabens | Dai 19345 | MN871759 | MN877772 | |
| S. subtropicum | CLZhao 16901 | OP799391 | — | Present study |
| S. subtropicum | CLZhao 11059 * | OP799390 | OP799377 | Present study |
| S. tenue | FP-102082 | KY948817 | — | |
| S. tenue | KHL 12316 | JN710598 | JN710598 | |
| S. tenuispinum | Spirin 2116 | JN710600 | JN710600 | |
| S. tenuispinum | Miettinen 8065 | JN710599 | JN710599 | |
| S. undigerum | MCW 472/13 | KY174987 | KY174987 | |
| S. undigerum | MCW 426/13 | KY174986 | KY174986 | |
| S. xanthum | CLZhao 5030 | MW204588 | MW204577 | |
| S. xanthum | CLZhao 5032 | MW204589 | MW204578 | |
| S. yunnanense | CLZhao 1445 | MW290042 | MW290056 | |
| S. yunnanense | CLZhao 2822 | MW290043 | MW290057 | |
| Trullella conifericola | Cui 2851 | MT269764 | — | |
| T. conifericola | Yuan 12655 | MT269760 | MT259326 | |
| T. dentipora | X 200 | JN710512 | JN710512 | |
| T. duracina | MCW 410/13 | MH475309 | MH475309 | |
| T. duracina | RP 96 | MH475310 | MH475310 | |
| Xanthoporus syringae | Jeppson 2264 | JN710607 | JN710607 | |
| X. syringae | AFTOL-ID 774 | AY789078 | AY684166 | |
List of species, specimens and GenBank accession numbers of sequences used in this study. * is shown type material, holotype.
* is shown type material, holotype.
The sequences were aligned in MAFFT version 7 () using the G-INS-i strategy. The alignment was adjusted manually using AliView version 1.27 (). The dataset was aligned first and then ITS and nLSU sequences were combined with Mesquite version 3.51. Alignment datasets were deposited in TreeBASE (submission ID 29889). Sequence of Climacocystis borealis (Fr.) Kotl. & Pouzar obtained from GenBank was used as an outgroup to root trees in the ITS+nLSU analysis in the family Steccherinaceae (Figure 1), and Irpex lacteus (Fr.) Fr. was used as an outgroup in the ITS+nLSU analysis in the genus Steccherinum (Figure 2) ().
Figure 1
Figure 2
Maximum parsimony (MP), maximum likelihood (ML) and Bayesian inference (BI) analyses were applied to the combined three datasets following previous study (Zhao and Wu, 2017), and the tree construction procedure was performed in PAUP* version 4.0b10 (). All characters were equally weighted and gaps were treated as missing data. Trees were inferred using the heuristic search option with TBR branch swapping and 1000 random sequence additions. Max-trees were set to 5000, branches of zero length were collapsed, and all parsimonious trees were saved. Clade robustness was assessed using bootstrap (BT) analysis with 1000 replicates (). Descriptive tree statistics-tree length (TL), consistency index (CI), retention index (RI), rescaled consistency index (RC), and homoplasy index (HI) were calculated for each maximum parsimonious tree generated. The multiple sequence alignment was also analyzed using maximum likelihood (ML) in RAxML-HPC2 through the Cipres Science Gateway (). Branch support (BS) for ML analysis was determined by 1000 bootstrap replicates.
MrModeltest 2.3 () was used to determine the best-fit evolution model for each data set for Bayesian inference (BI), which was performed using MrBayes 3.2.7a with a GTR+I+G model of DNA substitution and a gamma distribution rate variation across sites (). A total of 4 Markov chains were run for 2 runs from random starting trees for 2.8 million generations for ITS+nLSU in Steccherinaceae (Figure 1), and 1.7 million generations for ITS+nLSU in Steccherinum (Figure 2) with trees and parameters sampled every 1000 generations. The first one-fourth of all generations was discarded as burn-in. The majority rule consensus tree of all remaining trees was calculated. Branches were considered as significantly supported if they received maximum likelihood bootstrap value (BS) >70%, maximum parsimony bootstrap value (BT) >70%, or Bayesian posterior probabilities (BPP) >0.95.
Results
Molecular phylogeny
The ITS+nLSU dataset (Figure 1) included sequences from 82 fungal specimens representing 50 species. The dataset had an aligned length of 2257 characters, of which 1304 characters are constant, 237 are variable and parsimony uninformative, and 716 are parsimony informative. Maximum parsimony analysis yielded 36 equally parsimonious trees (TL = 3992, CI = 0.3885, HI = 0.6115, RI = 0.6621, and RC = 0.2572). The best model for the ITS+nLSU dataset estimated and applied in the Bayesian analysis was GTR+I+G (lset nst = 6, rates = invgamma; prset statefreqpr = dirichlet (1,1,1,1)). Bayesian analysis and ML analysis resulted in a similar topology to MP analysis with an average standard deviation of split frequencies = 0.007830 (BI), and the effective sample size (ESS) across the two runs is the double of the average ESS (avg ESS) = 182.
The phylogram inferred from the ITS+nLSU rDNA gene regions (Figure 1) showed that sixteen genera nested into the family Steccherinaceae as Antella Miettinen, Antrodiella Ryvarden & I.johans, Atraporiella Ryvarden, Butyrea Miettinen, Elaphroporia Z.Q. Wu & C.L. Zhao, Etheirodon Banker, Flaviporus Murrill, Frantisekia Spirin & Zmitr, Junghuhnia Corda, Loweomyces (Kotl. & Pouzar) Jülich, Metuloidea G. Cunn, Mycorrhaphium Maas Geest, Nigroporus Murrill, Steccherinum, Trullella Zmitr and Xanthoporus Audet, in which three new species Steccherinum fissurutum, S. punctatum and S. subtropicum grouped into genus Steccherinum.
The ITS+nLSU dataset (Figure 2) included sequences from 57 fungal specimens representing 27 species. The dataset had an aligned length of 2068 characters, of which 1465 characters are constant, 168 are variable and parsimony-uninformative, and 435 are parsimony-informative. Maximum parsimony analysis yielded 5000 equally parsimonious trees (TL = 1640, CI = 0.5213, HI = 0.4787, RI = 0.7996, RC = 0.4169). Best model for the ITS+nLSU dataset estimated and applied in the Bayesian analysis was GTR+I+G (lset nst = 6, rates = invgamma; prset statefreqpr = dirichlet (1,1,1,1). Bayesian analysis and ML analysis resulted in a similar topology to MP analysis with an average standard deviation of split frequencies = 0.009192 (BI), and the effective sample size (ESS) across the two runs is the double of the average ESS (avg ESS) = 198.
The phylogenetic tree (Figure 2) inferred from ITS+nLSU sequences covered 26 species of Steccherinum, which demonstrated that S. subtropicum was sister to S. enuispinum; S. fissurutum formed a monophyletic lineage; S. punctatum grouped with a clade comprised S. straminellum (Bres.) Melo and S. ciliolatum (Berk. & M.A. Curtis) Gilb. & Budington.
Taxonomy
Steccherinum fissurutum J.H. Dong & C.L. Zhao, sp. nov. Figures 3, 4.
Figure 3
Figure 4
Hierarchical information: Fungi, Dikarya, Basidiomycota, Agaricomycotina, Agaricomycetes, Polyporales, Steccherinaceae, Steccherinum.
MycoBank no.: MB 846499.
Diagnosis: differs from other Steccherinum species by its white to buff, cracked, subceraceous, grandinoid hymenial surface, a monomitic hyphal system with clamped generative hyphae and cylindrical basidiospores measuring 4.5–6.0 × 2.5–3.0 µm.
Holotype—China. Yunnan Province, Lijiang, Heilongtan Park, Xiangshan, GPS coordinates 26°53′ N, 100°13′ E, altitude 2, 400 m asl., on the fallen branch of angiosperm, leg. C.L. Zhao, 21 July 2021, CLZhao 21803 (SWFC).
Etymology—fissurutum (Lat.): referring to the cracked hymenophore surface of the type specimens.
Basidiomata: Annual, resupinate, adnate, cracked, subceraceous, without odor or taste when fresh, becoming brittle upon drying, up to 10 cm long, up to 2 cm wide, 50–150 µm thick. Hymenial surface grandinoid, aculei 3–5 per mm, the length of aculei up to 0.2 mm, white (60) when fresh, turning to white (60) to buff (13) upon drying. Sterile margin white, 0.5 mm wide.
Hyphal system: Monomitic, generative hyphae with clamp connections, colorless, thin-walled, frequently branched, interwoven, 2.5–3.5 µm in diam. IKI–, CB–, tissues unchanged in KOH.
Hymenium: Skeletocystidia numerous in the aculei, strongly encrusted in the obtuse apex, 26.5–36 × 6.5–9.5 µm; cystidioles absent. Basidia clavate, with 4 sterigmata and a basal clamp connection, 12.5–16.5 × 4.5–7 µm; basidioles dominant, in shape similar to basidia, but slightly smaller.
Basidiospores: Cylindrical, colorless, thin-walled, with one oil drop inside, IKI–, CB–, 4.5–6.0 × 2.5–3.0 µm, L = 5.23 µm, W = 2.79 µm, Q = 1.75–1.98 (n = 180/6).
Type of rot: White rot.
Additional specimens examined (paratypes): CHINA, Yunnan Province, Lijiang, Heilongtan Park, Xiangshan, GPS coordinates 26°53′ N, 100°13′ E, altitude 2, 400 m asl., on the fallen branch of angiosperm, leg. C.L. Zhao, 21 July 2021, CLZhao 21634, 21673, 21675, 21680, 21703, 21744, 21754, 21808, 21811, 21826, 21841 (SWFC).
Steccherinum punctatum J.H. Dong & C.L. Zhao, sp. nov. Figures 5, 6.
Figure 5
Figure 6
Hierarchical information: Fungi, Dikarya, Basidiomycota, Agaricomycotina, Agaricomycetes, Polyporales, Steccherinaceae, Steccherinum.
MycoBank no.: MB 846500.
Diagnosis: differs from other Steccherinum species by its cream to buff, punctate, grandinoid hymenial surface, a monomitic hyphal system with clamped generative hyphae and ellipsoid basidiospores measuring 3.6–4.5 × 2.6–3.4 µm.
Holotype—China. Yunnan Province, Yuxi, Xinping County, Jinshan Primeval Forest Park, GPS coordinates 24°07′ N, 101°99′ E, altitude 2, 300 m asl., on the stump of angiosperm, leg. C.L. Zhao, 2 January 2019, CLZhao 9184 (SWFC).
Etymology—punctatum (Lat.): referring to the punctate hymenophore surface.
Basidiomata: Annual, resupinate, adnate, punctate, soft leathery, without odor or taste when fresh, becoming leathery upon drying, up to 15 cm long, up to 5 cm wide, 50–100 µm thick. Hymenial surface grandinoid, aculei 5–9 per mm, the length of aculei up to 0.1 mm, white (60) when fresh, turning to cream (21) to buff (13) upon drying. Sterile margin cream, 0.5 mm wide.
Hyphal system: Monomitic, generative hyphae with clamp connections, colorless, thin-walled, frequently branched, interwoven, 3–4.5 µm in diam. IKI–, CB–, tissues unchanged in KOH.
Hymenium: Skeletocystidia numerous, thin-walled, cylindrical, strongly encrusted in the surface and almost entirely, 36–47 × 7.5–12 µm; cystidioles absent. Basidia subclavate to barrel, with 4 sterigmata and a basal clamp connection, 23–27 × 5.5–7.5 µm; basidioles dominant, in shape similar to basidia, but slightly smaller.
Basidiospores: Ellipsoid, colorless, thin-walled, smooth, with one oil drop inside, IKI–, CB–, 3.6–4.5(–4.7) × 2.6–3.4 µm, L = 4.00 µm, W = 2.88 µm, Q = 1.37–1.42 (n = 60/2).
Type of rot: White rot.
Additional specimen examined (paratype): CHINA, Yunnan Province, Yuxi, Xinping County, Jinshan Primeval Forest Park, GPS coordinates 24°07′ N, 101°99′ E, altitude 2, 300 m asl., on the stump of angiosperm, leg. C.L. Zhao, 2 January 2019, CLZhao 9181 (SWFC).
Steccherinum subtropicum J.H. Dong & C.L. Zhao, sp. nov. Figures 7, 8.
Figure 7
Figure 8
Hierarchical information: Fungi, Dikarya, Basidiomycota, Agaricomycotina, Agaricomycetes, Polyporales, Steccherinaceae, Steccherinum.
MycoBank no.: MB 846501.
Diagnosis: differs from other Steccherinum species by its pink to lilac, effuse-reflexed, odontioid hymenial surface, a dimitic hyphal system with clamped generative hyphae and ellipsoid basidiospores measuring 2.8–3.4 × 2.0–2.7 µm.
Holotype—China. Yunnan Province, Wenshan, Xichou County, Xiaoqiaogou National Nature Reserve, GPS coordinates 23°22′ N, 104°47′ E, altitude 1700 m asl., on the fallen branch of angiosperm, leg. C.L. Zhao, 15 January 2019, CLZhao 11059 (SWFC).
Etymology—subtropicum (Lat.): referring to distribution (subtropical zone) of the type specimens.
Basidiomata: Annual, effuse-reflexed, without odor or taste when fresh, becoming leathery upon drying, up to 6 cm long, up to 1.5 cm wide, 100–150 µm thick. Hymenial surface odontioid, aculei 5–7 per mm, the length of aculei 0.5–1 mm long, fresh pink (27) when fresh, turning to rose (28) to lilac (48) upon drying. Sterile margin cream, 0.5–1 mm wide.
Hyphal system: Dimitic, generative hyphae with clamp connections, colorless, thin-walled, branched, more or less interwoven, 2.3–3.5 µm in diam. Skeletal hyphae colorless, thick-walled, 3.5–4.5 µm diam; all hyphae IKI–, CB–, tissues unchanged in KOH.
Hymenium: Skeletocystidia numerous strongly encrusted in the obtuse apex, 20–82 × 5.5–10 µm; cystidioles absent. Basidia clavate, with 4 sterigmata and a basal clamp connection, 14.5–20 × 4–6 µm; basidioles dominant, in shape similar to basidia, but slightly smaller.
Basidiospores: Ellipsoid, colorless, thin-walled, IKI–, CB–, 2.8–3.4 × 2.0–2.7 µm, L = 3.00 µm, W = 2.31 µm, Q = 1.24–1.37 (n = 60/2).
Type of rot: White rot.
Additional specimen examined (paratype): CHINA, Yunnan Province, Wenshan, Xiaojie Town, Laojunshan National Nature Reserve, GPS coordinates 22°56′ N, 104°37′ E, altitude 2500 m asl., on the fallen branch of angiosperm, leg. C.L. Zhao, 15 January 2019, CLZhao 16901 (SWFC).
Discussion
In the present study, three new species, Steccherinum fissurutum, S. punctatum and S. subtropicum are described based on phylogenetic analyses and morphological characters.
Phylogenetically, seven clades were found in Polyporales: the residual polyporoid clade, the phlebioid clade, the antrodia clade, the tyromyces clade, the fragiliporia clade, the core polyporoid clade and the gelatoporia clade (; ). employed the molecular systematics of Steccherinum and related genera Antrodiella, and Junghuhnia utilizing sequences of the gene regions ITS, nLSU, mtSSU, ATPase subunit 6 (atp6), RNA polymerase II second largest subunit (rpb2), and translation elongation factor 1-alpha (tef1), to reveal that at least 16 transitions have taken place between poroid and hydnoid hymenophore types within the family Steccherinaceae. In the present study, based on the sequences of the gene regions ITS and nLSU (Figure 1), three new species, S. fissurutum, S. punctatum and S. subtropicum nested within the genus Steccherinum. Amplifying ITS and nLSU genes across genus Steccherinum (Figure 2), S. fissurutum formed a monophyletic lineage; S. punctatum grouped with a clade comprised S. straminellum and S. ciliolatum; S. subtropicum was sister to S. tenuispinum Spirin, Zmitr. & Malysheva. However, morphologically, S. straminellum differs from S. punctatum by having the dimitic hyphal system and narrower basidiospores (3.5–4.5 × 2.0–2.2 µm; ); S. ciliolatum is distinguished from S. punctatum by having narrowly ellipsoid to cylindrical basidiospores (4–4.5 × 2.2–2.5 µm; ). S. tenuispinum differs from S. subtropicum by its fimbriate rhizomorphs and longer aculei (1–4 mm; ).
Morphologically, Steccherinum fissurutum resembles S. litschaueri and S. ciliolatum in having cylindrical basidiospores. However, S. litschaueri is distinguished from S. fissurutum by its rhizomorphic margin and narrower basidiospores (4.5–5.5 × 2.0–2.2 µm; ). Steccherinum ciliolatum differs in having longer aculei (up to 1.5 mm) and longer basidia (18–22 × 4.5–6 µm; ).
Steccherinum punctatum is similar to S. hydneum Rick ex Maas Geest., S. tenuispinum and S. yunnanense in having leathery hymenophore. However, S. hydneum differs from S. punctatum by its longer aculei (2–3 mm) and wider basidiospores (4.2–5.0 × 3.6–4.1 µm; ); S. tenuispinum differs from S. punctatum in having whitish to dirty-ochraceous hymenial surface and narrower basidia (12–24 × 3.5–4.8 µm; ); S. yunnanense differs in its fimbriate margin and shorter basidia (10.5–15 × 5–6 µm; ). Steccherinum punctatum resembles S. aggregatum Hjortstam & Spooner, S. fragile and S. xanthum in having a monomitic hyphal system. However, S. aggregatum is distinguished from S. punctatum by having longer cystidia (100–150 × 10–12 µm) and smaller basidia (15–20 × 4–5 µm; ); S. fragile differs in having the fragile basidiomata and smaller basidiospores (2.8–3.1 × 2.1–2.2 μm; ). Steccherinum xanthum is distinguished from S. punctatum in having smaller basidia (10–19.3 × 3–5.2 μm; ).
Steccherinum subtropicum is similar to S. hydneum, S. oreophilum Lindsey & Gilb. and S. rubigimaculatum in the effuse-reflexed basidiomata. However, S. hydneum differs from S. subtropicum by its cinnamon buff hymenial surface and larger basidiospores (4.2–5.0 × 3.6–4.1 µm; ). Steccherinum oreophilum differs in its cottony hymenophore and larger basidiospores (5–6.5 × 3–3.2 µm; ); S. rubigimaculatum differs in having rust hymenial surface and longer basidiospores (3.5–5 × 2.5–3.5 µm; ); S. subtropicum resembles S. fragile, S. ochraceum and S. robustius (J. Erikss. & S. Lundell) J. Erikss. in having ellipsoid basidiospores. However, S. fragile is distinguished from S. subtropicum in having a monomitic hyphal system and shorter basidia (13–14 × 4.0–4.5 µm; ). S. ochraceum differs in its ocherous hymenial surface and longer cystidia (100 × 7–10 µm; ). The species S. robustius is distinguished from S. subtropicum by its fimbriate margin and longer basidiospores (3.5–5 × 2.5–3 µm; ).
Fungi are one of the most diverse groups of organisms on Earth and play a crucial role in ecosystem processes and functions (). New DNA sequencing techniques have revolutionized the researches of fungal taxonomy and diversity, in which about 150 thousand species of fungi have been described (). Wood decaying fungi have been studied intensively in recent years (; ; ; ; ; ; ; ; ; ; ; ; ; ), but the hydnoid species in the order Polyporales are still not well investigated in China, especially in the subtropics and tropics. In the present study, three new species, Steccherinum fissurutum, S. punctatum and S. subtropicum spp. nov. were found in subtropics, which enriches the fungal diversity of East Asia.
Key to species of Steccherinum sensu lato from China
1. Hyphal system monomitic in subiculum······························2
1. Hyphal system dimitic in subiculum····································8
2. Basidiospores <2 μm wide··········Mycorrhaphium adustum
2. Basidiospores >2 μm wide······················································3
3. Skeletocystidia absent····························Steccherinum fragile
3. Skeletocystidia present·····························································4
4. Aculei >1mm long·············································S. aggregatum
4. Aculei <1 mm long···································································5
5. Aculei <0.3 mm long, basidiospores with oil drops··········6
5. Aculei >0.3 mm long, basidiospores without oil drops···································································Cabalodontia queletii
6. Basidia >20 μm long··········································S. punctatum
6. Basidia <20 μm long································································7
7. Cystidia>35 μm long, basidiospores ellipsoid····S. xanthum
7. Cystidia<35 μm long, basidiospores Cylindrical········································································S. fissurutum
8. Skeletocystidia absent···········································S. hirsutum
8. Skeletocystidia present····························································9
9. Skeletocystidia subulate, apex acute···································10
9. Skeletocystidia clavate, apex blunt······································12
10. Basidiospores >5 μm wide, aculei >1.5 mm long···················································································S. oreophilum
10. Basidiospores <5 μm wide, aculei <1.5 mm long·········11
11. Basidiomata surface reddish to brick, basidiospores <2 μm wide················································································S. laeticolor
11. Basidiomata surface white to buff, basidiospores >2 μm wide····················································································S. subulatum
12. Basidiomata resupinate························································13
12. Basidiomata effused-reflexed··············································16
13. Basidiomata with broom-like rhizomorphs···················································Etheirodon fimbriatum
13. Basidiomata without broom-like rhizomorphs···············14
14. Basidiospores <2 μm wide·································S. mukhinii
14. Basidiospores >2 μm wide··················································15
15. Aculei <0.5 mm long, aculei <4 per mm··················································································S. tenuissimum
15. Aculei >0.5 mm long, aculei >4 per mm·····S. ochraceum
16. Sterile margin fimbriate······················································17
16. Sterile margin not fimbriate··············································18
17. Basidiospores <3.5 μm wide···························S. yunnanense
17. Basidiospores >3.5 μm wide····························S. elongatum
18. Basidiospores <4 μm long·················································19
18. Basidiospores >4 μm long·················································25
19. Aculei <2 mm long·····························································20
19. Aculei >2 mm long·····························································23
20. Aculei >0.5 mm long··························································21
20. Aculei <0.5 mm long··························································22
21 Basidiospores <2 μm wide····························S. subcollabens
21 Basidiospores >2 μm wide····························S. subtropicum
22. Basidiospores subcylindrical to allantoid················································································S. puerense
22. Basidiospores ellipsoid······································S. cremicolor
23. Aculei 3–4 mm long, pileus margin sharp ····································································Metuloidea murashkinskyi
23. Aculei up to 2 mm long, pileus margin blunt···············24
24. Basidiospores >1.5 μm wide····························S. rawakense
24. Basidiospores <1.5 μm wide························S. confragosum
25. Basidiospores subglobose····················································26
25. Basidiospores ellipsoid························································27
26. Aculei <2 mm long, basidiospores with a normal guttule or not··············································································S. subglobosum
26. Aculei >2 mm long, basidiospores with a distinct guttule···················································································S. hydneum
27. Basidia <11 μm long····························S. rubigimaculatum
27. Basidia >11 μm long····························································28
28. Basidiospores >3 μm wide································S. bourdotii
28. Basidiospores <3 μm wide···················································29
29. Aculei >0.5 mm long, pinkish buff to clay buff························································································S. robustius
29. Aculei <0.5 mm long, cream to pale buff·······················································································S. ciliolatum
Statements
Data availability statement
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/supplementary material.
Author contributions
Conceptualization, C-LZ; methodology, C-LZ and J-HD; software, C-LZ and J-HD; validation, C-LZ and J-HD; formal analysis, C-LZ and J-HD; investigation, C-LZ, Z-LZ, and J-HD; resources C-LZ; writing—original draft preparation, C-LZ, J-HD, X-CZ, and J-JC; writing—review and editing, C-LZ and J-HD; visualization, C-LZ and J-HD; supervision, C-LZ; project administration, C-LZ; funding acquisition, C-LZ and Z-LZ. All authors have read and agreed to the published version of the manuscript.
Funding
The research was supported by the National Natural Science Foundation of China (Project No. 32170004), Natural Science Foundation of the Jiangsu Higher Education Institutions of China (Grant 20KJB220003), Yunnan Fundamental Research Project (Grant No. 202001AS070043), the High-level Talents Program of Yunnan Province (YNQR-QNRC-2018-111).
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Abbreviations
ITS, internal transcribed spacer; nLSU, large subunit; SWFC, herbarium of Southwest Forestry University, Kunming, China; KOH, 5% potassium hydroxide; CB, Cotton Blue; CB–, acyanophilous; IKI, Melzer’s reagent; IKI–, both inamyloid and indextrinoid; L, mean spore length (arithmetic average for all spores); W, mean spore width (arithmetic average for all spores); Q, variation in the L/W ratios between The studied specimens, n (a/b), number of spores (a) measured from given number (b) of specimens, spore measurements do not include ornamentation; CTAB, cetyltrimethylammonium bromide; DNA, deoxyribonucleic acid; PCR, polymerase chain reaction; MP, maximum parsimony; ML, maximum likelihood; BI, Bayesian inference; TBR, tree-bisection reconnection.
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Summary
Keywords
biodiversity, molecular systematics, Steccherinaceae, wood-inhabiting fungi, Yunnan Province
Citation
Dong J-H, Zhang X-C, Chen J-J, Zhu Z-L and Zhao C-L (2023) A phylogenetic and taxonomic study on Steccherinum (Polyporales, Basidiomycota): Focusing on three new Steccherinum species from southern China. Front. Cell. Infect. Microbiol. 12:1103579. doi: 10.3389/fcimb.2022.1103579
Received
20 November 2022
Accepted
22 December 2022
Published
10 January 2023
Volume
12 - 2022
Edited by
Jia-Jia Chen, Jiangsu Vocational College of Agriculture and Forestry, China
Reviewed by
Anush Kosakyan, Academy of Sciences of the Czech Republic (ASCR), Czechia; Hai-Sheng Yuan, Institute of Applied Ecology (CAS), China
Updates
Copyright
© 2023 Dong, Zhang, Chen, Zhu and Zhao.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Chang-Lin Zhao, fungi@swfu.edu.cn; Zhong-Long Zhu, thefuturehero@163.com
This article was submitted to Fungal Pathogenesis, a section of the journal Frontiers in Cellular and Infection Microbiology
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