Abstract
The skin is home to various bacteria, archaea, fungi, and viruses, collectively referred to as the skin microbiota. Patients with certain skin diseases reportedly have unique skin “dysbiosis,” a condition involving imbalanced microbiota, suggesting that dysbiosis in the skin may be either causal or a consequence of specific skin diseases. Atopic dermatitis (AD) is the most common allergic skin disease that affects 15-20% of children and 2-10% of adults worldwide. Both intrinsic genetic factors, such as susceptibility to type 2 inflammation or skin barrier dysfunction, and extrinsic environmental factors, such as air pollen and skin microbiota, contribute to AD. Staphylococcus aureus, which does not often colonize the skin of healthy individuals, is commonly identified in the lesional skin of patients with AD and is correlated with the disease flare. However, the role of S. aureus in the pathogenesis of AD has not been elucidated. Here, we discuss the pathological behavior of S. aureus, focusing on accessory gene regulator (Agr) quorum sensing, which is a fundamental bacterial cell-to-cell interaction mechanism that affects the behavior of S. aureus and other members of the microbial community. Importantly, beyond bacteria-bacteria interactions, the Agr quorum sensing system also regulates various virulence factors, which induce type 2 and IL-17-dependent skin inflammation in the host. Furthermore, the colonization of Agr-positive S. aureus in early life accelerates the development of pediatric AD. Finally, we aim to highlight the current efforts to establish novel therapeutic methods to ameliorate or prevent AD through Agr-targeted intervention.
Introduction
The skin is the largest organ of the human body and plays several crucial roles in maintaining human health. It is a physical barrier that protects the host from bacterial invasion and harmful external environmental factors (). The skin contains a diverse microbial population comprising bacteria, fungi, and viruses, referred to as the microbiota. Recent studies have revealed a correlation between the microbiota and various diseases, including atopic dermatitis (AD) (; Paller et al., 2019). AD is a chronic inflammatory skin disorder that affects a significant proportion of the population in industrialized nations, with a prevalence of 20% in children and approximately 5% in adults in high-income countries (). AD is clinically characterized by red, dry and itchy skin lesion. Sleep disturbance due to severe itching is one of the major symptoms of AD, and it can significantly impair patients’ and their caregivers’ quality of life and social productivity ().
AD is a complex disease characterized by a Th2 cell-mediated immune response, which is the central mechanism underlying its pathogenesis (). In acute phase of AD, the skin barrier is disrupted and allergens are presented to antigen-presenting cells bearing specific IgE to enhance Th2 response (Werfel et al., 2016). Thymic stromal lymphopoietin (TSLP) and interleukins released from keratinocytes stimulate Th2 cell and Langerhans cell development. Th2 cell subsequently produces cytokines, Interleukin (IL)-4, IL-13, and IL-31, which directly activate sensory nerves and promote pruritus (Sonkoly et al., 2006). At the same time, IL-4, IL-13 induces inflammatory cytokines and decreases keratinocytes production of filaggrin, loricrin, and involucrin, further decreasing the barrier function (; Werfel et al., 2016). In contrast, in the chronic phase, the expression of the type-1 cytokine such as interferon-gamma are heightened (Werfel et al., 1996; Tsoi et al., 2020). It is also linked to the activities of various T cell subsets, such as the Th22, Th17/IL-23, and Th1 cytokine pathways (). Although various immune dysfunctions related to AD have been widely investigated, the underlying causes of aberrant immune responses remain unclear. The development of AD is believed to result from the interplay between environmental factors, as represented by the hygiene hypothesis, and the host’s genetic background (). One such environmental factor is skin dysbiosis. Our group has made important discoveries on the relationship between AD and Staphylococcus. aureus. (; ; ) Here, we review the relationship between skin dysbiosis and AD, focusing on the accessory gene regulator (Agr) quorum sensing mechanism, which plays an essential role in the virulence of S. aureus.
The role of the skin microbiota in host immunity
The surface area of an adult individual’s skin including not only exposed interfollicular epithelium but the epithelial lining of hair follicles, eccrine ducts, apocrine ducts, and sebaceous glands encompasses approximately at least 30 square meters and harbors an estimated 40 distinct bacterial strains, with a concentration of 106 bacteria per square centimeter (; ). The skin microbiota of neonates is acquired during parturition and varies depending on the delivery mode. Neonates born via vaginal delivery possess skin microbiota similar to the maternal vaginal microbiota, whereas those born via cesarean section exhibit skin microbiota similar to the maternal skin microbiota (). As individuals age, skin microbial composition gradually shifts. During puberty, the skin microbiota undergoes significant changes, particularly in areas where the sebaceous glands develop, leading to a stable condition of skin microbial communities in adults (Oh et al., 2012; Si et al., 2015). The normal skin microbiota obtained through this process plays a vital role in the host’s immune system (). Human skin acquires memory regulatory T cells progressively from the neonatal to adult stages, which contribute to developing immune tolerance against commensal bacteria. One study showed that the colonization of Staphylococcus epidermidis, a representative normal skin microbiota species, during the neonatal period causes CD4+ T regulatory cells to migrate to the skin and generate tolerance towards commensals in mice (; Scharschmidt et al., 2015). In contrast, IL-17A+ CD8+ T cells act as a defensive mechanism against pathogenic microorganisms (Scharschmidt et al., 2015). Additionally, in adult mice, S. epidermidis on the skin stimulates the migration of IL-17A+ CD8+ T cells, enhancing innate immunity against pathogens such as Candida albicans and Leishmania major (; ). Among staphylococci, S. epidermidis, and Staphylococcus hominis are representative commensal species of coagulase-negative staphylococci in human skin (), and produce antimicrobial peptides that target pathological bacteria, such as S. aureus. Commensal staphylococci also stimulate the host to produce antimicrobial peptides, including β-defensin-2, which aid in eliminating pathogenic microorganisms (; ; Zipperer et al., 2016; ). Thus, the resident bacterial flora plays an essential role in maintaining the balance of the host skin immune system in a healthy state (Sanchez Rodriguez et al., 2014; ).
Skin microbiota and Staphylococcus virulence factors in AD
An initial study, which was conducted in the 1960s, revealed that individuals with AD had the presence of S. aureus in their affected skin (Selwyn, 1963). In 1974, a significant amount of S. aureus was found on the skin of patients with AD, even in cases with no visible signs of infection (). Recent studies have revealed that disturbances in normal microbiota or dysbiosis can be an underlying cause or consequence of various diseases (Sanford and Gallo, 2013). Patients with AD typically exhibit a distinctive composition of skin microbiota, characterized by reduced richness, depletion of some commensal bacteria, and enrichment of staphylococci (; Tay et al., 2021). Specifically, skin lesions of patients with AD often show colonization by pathogenic S. aureus, which does not normally colonize the skin of healthy individuals, and abnormal growth of S. epidermidis (; ). The percentage of individuals carrying S. aureus in their lesional skin area varied between reports. According to a meta-analysis of 95 observational studies among patients with AD, the prevalence of S. aureus colonization on lesional skin was 70%. In contrast, it was only 39% in non-lesional or healthy control skin (Totté et al., 2016). Additionally, the prevalence of S. aureus colonization increases with disease severity (Totté et al., 2016). Furthermore, real-time PCR has revealed that the density of S. aureus correlates with disease severity (Tauber et al., 2016).
Presumably, molecules of S. aureus, such as α-hemolysin (Hla) (Travers et al., 2003), lipoteichoic acid (LTA) (Travers et al., 2010), peptidoglycan (PGN) (), and staphylococcal protein A (SPA), are involved in inflammatory reactions of the skin. LTA and PGN from S. aureus have been reported to induce inflammatory responses in the skin as Toll-like receptor ligands (Travers et al., 2010; ). However, these molecules are also present in other commensal skin bacteria, and their specificity has not yet been demonstrated. Hla triggers potassium efflux upon insertion into the membrane of human keratinocytes, and topical application of Hla induces skin barrier disruption and inflammation in SKH-HR1 hairless mice (Travers et al., 2003; ). Although SPA can disrupt opsonization and phagocytosis by the host immune system and trigger IL-18 production by keratinocytes (Spika et al., 1981), topical application of SPA did not induce skin inflammation in a mouse model (). Superantigens (SAgs) such as toxic shock syndrome toxin-1 (TSST-1) and staphylococcal enterotoxins bind to major histocompatibility class II (MHC II) molecules on the surface of antigen-presenting cells and T cell receptors on T cells, bypassing the constraint of antigenic peptide presentation. Although these SAgs can cause toxic shock syndrome in humans, their effect on AD severity is not significant (; Rojo et al., 2014). However, these previous studies did not analyze the role of S. aureus pathogenic factors in the skin of mice epicutaneously colonized by live S. aureus. Therefore, whether these factors contribute to AD pathogenesis on the skin surface remains unclear.
In addition to S. aureus, S. epidermidis has also been reported as a pathogenic bacterium in AD. A previous report has mentioned that an increasing number of S. epidermidis in the lesional skin of patients with AD produce EcpA, which contributes to dermatitis (). In contrast, individual strains of S. epidermidis can inhibit biofilm formation by S. aureus through the production of Esp, a serine protease present in normal microbiota (). Thus, the pathogenicity of S. epidermidis in AD is not as well established as that of S. aureus and remains debatable.
In summary, differences in the microbiota exist between the normal skin and the skin of patients with AD. Dysbiosis of the lesional skin, characterized by a shift in the proportion of staphylococci and an increase in pathogenic strains, contributes to the exacerbation of AD.
Staphycoccus aureus Agr quorum sensing in AD pathogenesis
Quorum Sensing (QS) is the ability of bacteria to detect the cell population density. When the bacterial population is high, they are at risk of nutrient scarcity. Thus, bacteria change their behavior by regulating the production of various genes and substances to obtain more nutrients from the host or eliminate bacteria with similar nutritional requirements. S. aureus possesses an auto-regulatory operon, Agr system, as a QS function. S. aureus, similar to a pheromone, secretes an exocrine auto-inducing peptide (AIP) to communicate with and sense its species. When the population density is high, and AIP reaches the threshold for activating the transmembrane receptor (AgrC) on the cell surface, autophosphorylation of the histidine kinase AgrC is triggered. AgrC binds to AgrA, a DNA-binding response regulator, and activates AgrA via phosphorylation. AgrA directly binds to agr region to activate two bidirectional promoters, P2 and P3. Under the P2 promoter regulation, agrB encodes the AIP transporter in the extracellular space and agrD, encoding the precursor of AIP, and agrC and agrA. There are four subcategories of Agr, exhibiting distinctions in the amino acid sequence of the mature autoinducing peptide (AIP) (). Recently, the AIPs of groups 1, 2, and likely 4 are reported to be exported by AgrB and trimmed at the N-terminus by the non-Agr-encoded membrane-located protease MroQ (Stock et al., 2022; Zhao et al., 2022). Thus, the agr operon is activated in a positive-feedback manner once QS is triggered. In contrast, the P3 promoter regulates various toxins via RNAIII, a regulatory RNA () (Figure 1).
Figure 1
The phenol-soluble modulin (PSM) family is a major virulence factor of Staphylococcus and is regulated by the Agr-QS system (Wang et al., 2007; Otto, 2014). S. aureus possesses four PSMα peptides (PSMα1–4), two PSMβ peptides (PSMβ1 and PSMβ2), and δ-toxin (PSMγ). The psmα and psmβ operons are directly regulated by AgrA, while δ-toxin is encoded within the RNAIII operon and regulated under the P3 promoter () (Figure 1).
S. aureus uses Agr-QS to behave differently in various situations. During chronic infections, S. aureus forms biofilms and exhibits strong antibiotic resistance when agr is suppressed (Schilcher and Horswill, 2020). However, as the biofilm matures, Agr-QS is turned on, and PSM production enables bacterial cells to detach from the biofilm and spread (). Additionally, α-type PSMs, particularly PSMα3, strongly induce neutrophil chemotaxis and Ca2+ flux, which are highly toxic to neutrophils (Wang et al., 2007; Otto, 2014). Using community-acquired methicillin-resistant S. aureus (CA-MRSA), the PSMα deletion strain, but not the other PSM deletion strains, had a significantly decreased ability to cause skin abscess formations in mice (Wang et al., 2007). These results suggest that PSMα, via Agr-QS activation, may contribute to developing CA-MRSA skin and soft tissue infections (Wang et al., 2007; Otto, 2014). S. aureus utilizes Agr-QS to control the expression of virulence factors during growth (). We have previously reported that Agr-QS in S. aureus plays a crucial role in skin adaptation and AD pathogenesis (; ). In the following sections, we elaborate on the pathogenic role of S. aureus Agr-QS in AD.
δ-toxin
Although the severity of AD is associated with the presence of S. aureus, the precise role of this bacterium in disease pathophysiology remained unclear (White and Noble, 1986). This may be because, despite the presence of bacteria in patients with AD on the outermost layer of the skin, the stratum corneum, the previous mouse models examining the pathogenicity of S. aureus in the skin utilized bacterial injection into the subcutaneous tissue (Yoshioka et al., 2003; ; ). To address this issue, we adapted an ovalbumin (OVA) epicutaneous sensitization model and established an epicutaneous S. aureus inoculation mouse model (Spergel et al., 1998; ). Using this model, we revealed that the expression of RNAIII, which is indicative of the positive expression of Agr-QS, was observed four days after epicutaneous inoculation of live S. aureus. Mice colonized with S. aureus developed severe dermatitis on day 7. Because we identified δ-toxin from S. aureus via activation of Agr-QS strongly inducing mast cell degranulation in vitro, we compared S. aureus wild-type and δ-toxin deficient strains in this model (). Mice colonized with S. aureus lacking δ-toxin showed significantly reduced skin inflammation compared to wild-type colonized mice. In addition, precolonization with wild-type S. aureus, but not with δ-toxin deficient S. aureus, enhanced the production of OVA-specific IgE in OVA-exposed mice. These responses are abolished in mast cell-deficient mice. Thus, we found that Th2-type dermatitis was induced through mast cell degranulation triggered by δ-toxin under Agr-QS expression. Furthermore, we analyzed RNAIII expression in wash fluid obtained from the lesional and non-lesional skin of patients with AD and found that RNAIII expression was only upregulated in AD lesional skin, indicating the involvement of Agr-QS in AD exacerbation in humans (; ) (Figure 2).
Figure 2
PSMα
Our research group further elucidated how PSMα acts on keratinocytes to induce dermatitis (). Using primary keratinocytes, we found that PSMα induces epidermal keratinocyte cell death and stimulates the release and secretion of the alarmins IL-1α and IL-36α via Myd88, a signaling adaptor of IL-1 receptor (IL-1R) and IL-36 receptor (IL-36R). Furthermore, we performed epicutaneous S. aureus inoculation using IL-1R deficient (Ilr1-/-) mice and an IL-36R neutralizing antibody. Only Ilr1-/- mice treated with anti-IL-36R antibody, but not Ilr1-/- or IL-36R antibody-treated wild-type mice, showed dramatically suppressed dermatitis compared to wild-type mice, indicating that both IL-1 and IL-36 are important for the induction of skin inflammation in epidermal S. aureus inoculation. Additionally, IL-1R signaling plays an important role in Th17 cell differentiation (). Flow cytometry analysis of cells from skin lesions in a mouse model of S. aureus epidermal inoculation showed a dramatic increase in IL-17A-producing cells and a small increase in cells producing IL-17F and IL-22, suggesting that IL-1R signaling is involved in Th17 cell differentiation and the subsequent induction of skin inflammation. When S. aureus was inoculated on IL-17A and IL-17F double-knockout mice lacking IL-17 signaling, skin inflammation was attenuated compared to that in wild-type mice, whereas the number of S. aureus grown on the skin was comparable. To identify the molecule responsible for S. aureus that releases alarmin from keratinocytes, we stimulated keratinocytes with culture supernatants of S. aureus wild-type and various toxin-deficient strains. The culture supernatant of the S. aureus wild-type strain, but not that of the PSMα deficient strain, strongly enhanced the release of alarmins from keratinocytes. PSMα was also essential for inducing IL-17-dependent dermatitis via the release of alarmins in our epicutaneous S. aureus inoculation model (). A previous report also demonstrated that IL-17 had been reported to be involved in the pathogenesis of AD in infancy (). The induction of IL-17-dependent dermatitis by PSMα suggests that the activated Agr-QS of S. aureus on the skin may be responsible for AD development (Figure 2).
Other molecules
Previously, it was reported that MroQ is an important mediator of S. aureus pathogenesis in strains harboring a type I and type II Agr variant (Zhao et al., 2022). MroQ functions as a membrane protease regulator of Agr and is also an essential component of AIP biosynthesis (Zhao et al., 2022). In a mouse intradermal infection model, a mroQ mutant of Agr type I showed a dramatic reduction in abscess formation (Stock et al., 2022). However, the importance of MroQ in an epicutaneous model has not been investigated, and a mroQ mutant was not found in infant skin isolates from an AD infant cohort study. Therefore, the role of MroQ in the pathogenesis of AD remains unclear. Another report mentioned that eight of 10 AD skin-adapted S. aureus strains harbored mutations in fumC and other metabolic genes and stimulate inflammatory responses in keratinocytes in vitro (). Although an AD-associated mutant strain was also only tested in intradermal injection mouse model, a skin-adapted isolate failed to generate protection from a secondary infectious challenge ().
Agr quorum sensing drives Staphycoccus aureus skin colonization in AD infants
Examination of the virulence factors modulated downstream of Agr-QS indicated that S. aureus exacerbates skin inflammation in AD. However, it remains unclear why S. aureus is disproportionately present in AD skin and rarely found in healthy skin. Therefore, to elucidate the mechanism of S. aureus colonization before the onset of AD, we conducted a cohort study to chronologically obtain skin microbiota from the cheeks of 268 Japanese infants 1-6 months after birth (). Approximately 45% of the infants were colonized with S. aureus at one month; however, the presence or absence of this colonization did not affect the risk of developing AD at one year of age. In contrast, the risk of developing AD was significantly higher in infants colonized with S. aureus at six months. We examined the genomic differences between S. aureus strains associated with AD and healthy skin. Using whole-genome sequencing of S. aureus strains, we discovered that loss-of-function mutations in the agr locus of S. aureus occurred in strains from infants who did not develop AD at 1 year of age. In contrast, no mutations in this region have been identified in infants with AD (). Furthermore, our study, using an epicutaneous S. aureus colonization mouse model, revealed that the Agr-QS system plays a critical role in the epidermal colonization of S. aureus and the development of AD-like inflammation (). These results suggest that the presence of a functioning Agr-QS system in S. aureus isolates from AD-associated infant skin contributes to skin colonization and AD development. In contrast, the absence of this system, due to a loss-of-function mutation in healthy infant skin, leads to the elimination of S. aureus. Thus, the maintenance of pathogenicity through the Agr-QS system correlates with S. aureus skin colonization and the emergence of AD (Figure 3). In contrast, another report mentioned that human skin grafts maintained on severe combined immunodeficiency disease (SCID) mice to follow the consequences of S. aureus infection showed that many more agr mutant USA300 MRSA strain are seen in the infected graft compared to its wild-type strain (Soong et al., 2015). Even though this may seem contrary to what we observed in AD infant cohort (), when considering the background of an immunodeficiency in SCID mice, it may reflect the importance of host immunity in the colonization and pathogenesis of S. aureus on the skin (Soong et al., 2015).
Figure 3
Interactions between Staphycoccus aureus and other bacterial species
The communication between bacteria in the human body has not been well understood until recently. Many researches are currently investigating the interactions of S. aureus with other bacterial species via QS and other molecules. Notably, recent work revealed that S. epidermidis can inhibit the formation of S. aureus biofilms by the secretion of Esp, a serine protease, which consequently inhibit the colonization of S. aureus upon epithelial surfaces (
Other than the anti-microbial peptides, there is another attempt to inhibit S.aureus pathogenicity through inhibition of QS. These molecules with the capability of inhibiting the QS signals are named as Quorum Quenching (QQ) or quorum sensing inhibitor (QSI). Other staphylococci besides S. aureus also utilize AIPs for Agr-QS. Although these species share a common AIP structure, several AIP have different amino acid sequences. Thus, staphylococci with different types of AIP compete with each other, upregulating the expression of the Agr in bacteria of the same type of AIP while downregulating the expression of the agr in other staphylococci of different types of AIP (
Agr quorum sensing is a potential therapeutic target for AD and Staphycoccus aureus skin infection
Based on previous research, it has been established that the Agr-QS in S. aureus is crucial for the bacterial colonization of the skin and the exacerbation of AD. Various approaches have been attempted to target S. aureus for the treatment of AD, including the use of antibiotics and disinfectants to eliminate S. aureus. In industrialized countries, including the United States, sodium hypochlorite bleach baths have been used for the treatment of AD to effectively eradicate S. aureus (
Therefore, Agr-QS in S. aureus, rather than in the bacteria, has attracted the attention of researchers as a potential therapeutic target. Our group has also reported that Agr-QS inhibitors suppress the virulence of S. aureus and reduce skin inflammation in a mouse model of inflammatory skin disease variants (
Conclusions
As discussed above, the Agr-QS is widely recognized as necessary for S. aureus colonization of the skin of patients with AD. The toxins produced by the Agr-QS can exacerbate the disease. However, whether atopic predisposition or bacterial colonization is the primary cause of AD development remains debatable. Further analysis is required to understand the mechanism that primarily controls the colonization and elimination of S. aureus from the skin. Targeting the mechanism of S. aureus Agr-QS in patients with AD may prevent the development and exacerbation of AD. This approach is completely different from conventional treatments for AD and is significant because it has the potential to prevent the development of AD and can lead to breakthroughs in the treatment of other S. aureus infections and, by extension, infections caused by other bacterial species.
Statements
Author contributions
All authors listed have made a substantial, direct, and intellectual contribution to the work and approved it for publication.
Funding
This work was supported by grants from the Japan Society for the Promotion of Science, JSPS KAKENHI 20H03701 (YN), JSPS KAKENHI Grant Number 16H06279 (PAGS) (YN), JSPS KAKENHI 22K16278 (YY), Advanced Research and Development Programs for Medical Innovation, AMED-PRIME JP 18gm6010016h0002 (YN), AMED-CREST 21gm1610004s0201 (YN) and The Leo Foundation (YN).
Acknowledgments
We would like to appreciate kindly feedback offered by Bernard C. Lo, and also thank Editage [http://www.editage.com] for editing and reviewing this manuscript for English language.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
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Summary
Keywords
atopic dermatits, Staphycoccus aureus, Agr, quorum sensing, Th2, IL-17, dysbiosis
Citation
Tamai M, Yamazaki Y, Ito T, Nakagawa S and Nakamura Y (2023) Pathogenic role of the staphylococcal accessory gene regulator quorum sensing system in atopic dermatitis. Front. Cell. Infect. Microbiol. 13:1178650. doi: 10.3389/fcimb.2023.1178650
Received
03 March 2023
Accepted
03 April 2023
Published
14 April 2023
Volume
13 - 2023
Edited by
Seth Dickey, University of Maryland, College Park, United States
Reviewed by
Marc Burian, University Hospital RWTH Aachen, Germany; Bernhard Krismer, University of Tübingen, Germany
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© 2023 Tamai, Yamazaki, Ito, Nakagawa and Nakamura.
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*Correspondence: Yuumi Nakamura, ymatsuoka@derma.med.osaka-u.ac.jp; Yuriko Yamazaki, y.yamazaki@derma.med.osaka-u.ac.jp
This article was submitted to Molecular Bacterial Pathogenesis, a section of the journal Frontiers in Cellular and Infection Microbiology
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