Abstract
Non-alcoholic fatty liver disease (NAFLD) has emerged as one of the leading liver diseases worldwide. NAFLD is characterized by hepatic steatosis and may progress to an inflammatory condition termed non-alcoholic steatohepatitis (NASH), liver cirrhosis, and hepatocellular carcinoma. It became evident in the last years that NAFLD pathophysiology is complex and involves diverse immunological and metabolic pathways. An association between intestinal signals (e.g., derived from the gut microbiota) and the development of obesity and its metabolic consequences such as NAFLD are increasingly recognized. Pre-clinical studies have shown that germ-free mice are protected against obesity and hepatic steatosis. Several human studies from the past years have demonstrated that NAFLD contains a disease-specific gut microbiome signature. Controlled studies propose that certain bacteria with rather pro-inflammatory features such as Proteobacteria or Escherichia coli are dominantly present in these patients. In contrast, rather protective bacteria such as Faecalibacterium prausnitzii are decreased in NAFLD patients. Furthermore, various bacterial metabolites and microbiota-generated secondary bile acids are involved in NAFLD-associated metabolic dysfunction. Although these findings are exciting, research currently lack evidence that interference at the level of the gut microbiome is beneficial for these diseases. Further preclinical and clinical studies are needed to advance this aspect of NAFLD research and to support the notion that the intestinal microbiota is indeed of major relevance in this disorder.
Introduction
Non-alcoholic fatty liver disease (NAFLD) has emerged in the last years as the most common liver disease worldwide (). The reason for this development is mainly based on the observation that obesity and obesity-related disorders such as type 2 diabetes (T2D) are on the rise, and NAFLD reflects a typical complication of these disorders (). Importantly, hepatic steatosis might evolve toward its inflammatory complication i.e., non-alcoholic steatohepatitis (NASH), liver cirrhosis, and hepatocellular carcinoma (, ). It is currently believed that ~10–20% of all subjects with NAFLD develop NASH. Whereas, advances in the NAFLD field have been substantial in the past years, it remains still unclear why certain subjects develop NASH while the majority of patients do not progress. Although it is clear that obesity plays a key role in NAFLD pathogenesis, aspects behind the obesity epidemic remain unresolved and might not simply reflect calorie consumption. It has long been assumed that certain host factors and particularly the gut microbiota is involved in the evolution of this disease toward its inflammatory phenotype i.e., NASH ().
The human gastrointestinal tract contains a huge number of bacteria, archaea, and viruses (–). The development of modern molecular and sequencing technologies allowed medical research in the last years to get some insights into this exciting bacterial world (). Recent calculations proposed that three bacterial cells exist for every single cell of the human body (). Whereas, it has been initially assumed that the genes of the gut microbiome mainly control functions regarding digestion of complex carbohydrates or regulating immune processes, recent evidence indicates that the microbiome has major functions in directing metabolic pathways in health and disease (). The gut microbiota also controls the integrity of the intestinal epithelial barrier and thereby substantially contributes to gastrointestinal health (–) (Figure 1A). Indeed, evidence highlights that mucosal integrity is affected in obesity-related disorders including NAFLD ().
Figure 1
It is increasingly acknowledged that the intestinal microbiota regulates metabolic functions and plays a role in the pathogenesis of NAFLD. Animal experiments suggested that the gut microbiota is critically involved in development of adipose tissue (
Bacterial Dysbiosis in NAFLD
Pre-clinical Studies
Landmark animal experiments performed by Bäckhed et al. suggested that the gut microbiota affects the development of adipose tissue (
Interference at the gut microbiome level by either pre-, pro-, or antibiotics might therefore affect disease phenotype. A prebiotic i.e., guar gum substantially changed the gut microbiota composition in a HFD model, decreased diet-induced obesity, and ameliorated glucose tolerance but interestingly even worsened liver phenotype leading to more inflammation and fibrosis (
Obesity rates are increasing worldwide and maternal obesity confers risk to developing disease in offspring (
Clinical Evidence for Dysbiosis in NAFLD
Substantial evidence from the past years suggests that the gut microbiota plays a role in NAFLD. In a clinical study including 22 subjects with NASH and 23 control patients, subjects with NASH showed small intestinal bacterial overgrowth (Figure 1B) and increased circulating endotoxin and TNFα levels (
Table 1
| Enriched in NAFLD | Bacteroides(Genus) ( |
| Ruminococcus(Genus) ( | |
| Lactobacillaceae(Family) ( | |
| Lactobacillus(Genus) ( | |
| Proteobacteria(Phylum) ( | |
| E. coli(Species) ( | |
| Decreased in NAFLD | Actinobacteria(Phylum) ( |
| Bacteroidetes(Phylum) ( | |
| Oscillobacter(Genus) ( | |
| Prevotella(Genus) ( | |
| Ruminococcus(Genus) ( | |
| Faecalibacterium prausnitzii(Species) ( | |
| Coprococcus(Genus) ( | |
| Firmicutes(Phylum) ( |
Overview of intestinal microbiota changes in NAFLD.
Interestingly, Schierwagen et al. recently detected a circulating microbiome when studying central, hepatic and portal venous blood and peripheral blood from seven liver cirrhosis patients receiving a transjugular portosystemic shunt (
The most convincing evidence for a potential role of the intestinal microbiota in human NAFLD has been reported by Loomba et al. (
What can we learn from microbiome studies in type 2 diabetes?
Several studies from the past years have suggested that a gut microbiome signature exists in diabetes (
What comes first remains a key question. Hyperglycemia impairs epithelial integrity (46) and could exhibit a relevant factor influencing composition of the intestinal microbiota. In addition, an altered microbiota early in disease evolution of T2D could subsequently affect diverse disease characteristics of diabetes such as insulin resistance. Studies from pre-diabetes suggest that dysbiosis might reflect a rather early change in this disease (44, 48). Additional studies investigating well-characterized patients taking care of many potential additional factors such as dietary factors, drugs, or stool consistency are awaited to further strengthen the association of an altered intestinal microbiota with diabetes. The final proof, however, for a key role of the intestinal microbiota in type 2 diabetes depends on clinical trials where such new identified bacteria when administered to patients will demonstrate beneficial metabolic effects.
Role of bacterial metabolites in NAFLD
The gut microbiota contributes substantially to circulating metabolites in the human body. These metabolites may act pro-inflammatory, direct metabolic processes, act protective, and anti-inflammatory or as probably true for most cases exert rather unknown biological functions. A recent chemical genetic screen revealed that many bacterial members of the gut microbiota release metabolites commonly interacting with so called G-protein coupled receptors (GPCRs) (49). This is potentially of major biological relevance as GPCRs are expressed by many cell types throughout the body and exert mainly immune and metabolic functions (50, 51).
Some metabolites, such as short chain fatty acids (SCFA) acetate, butyrate, or propionate can only be produced by bacterial fermentation, that is digestion of complex carbohydrates. Fecal SCFAs concentrations correlate with the presence of certain bacteria such as Alistipes, Barnesiella, Prevotella, or inversely with Bacteroides at least in mice (52). SCFAs are metabolically highly active, mainly act via GPCRs, such as Gpr41 with its ligand propionate (53). Importantly, Gpr41−/− mice do not exhibit obesity despite high calorie challenge (54). The exact mechanisms of SCFAs in NAFLD are incompletely understood. Some evidence suggests that SCFAs promote gluconeogenesis and lipogenesis (55) which is also supported by clinical evidence (56). In contrast, many studies in the field of metabolism suggest that they act metabolically beneficial (57, 58). Butyrate is also suppressing HFD-induced obesity and insulin resistance (59). Another protective mechanism of SCFAs might be mediated via blocking histone deacetylases (HDACs) and thereby inducing regulatory T cells which could reduce insulin resistance (60–64).
Dietary factors such as phopsphatidylcholine, choline and carnitine are metabolized by the gut microbiota to generate trimethylamine (TMA) which is converted in the liver to TMA-N-oxide (TMAO) by flavin-containing monoxygenases. TMAO levels significantly relate with atherosclerosis and associated cardiovascular complications such as myocardial infarction and stroke as this metabolite promotes inflammation and platelet activation (65, 66) (Figure 1D). Increased TMAO levels correlate with the presence of T2D, glycemic control in T2D, its complications and also NAFLD (67–70).
A large study assessed the relationship between metabolome, the gut microbiome and hepatic transcriptome (71). Amount of hepatic steatosis was accompanied by a certain microbiome signature defined by decreased microbial gene richness (MGR), and increased rates of Proteobacteria, Actinobacteria, and Verrucomicrobia. A reduced MGR also correlated with an increase in branched chain amino acids (BCAA) pool and one bacteria-derived metabolite i.e., phenylacetate was highly associated with steatosis. Phenylacetate, a degradation product of certain essential amino acids such as phenylalanine and tyrosine and possibly other related metabolites enhance hepatic lipid accumulation by increasing BCAA utilization. Interestingly, administration of phenylacetate to mice resulted also in hepatic steatosis although underlying mechanisms are currently not understood.
Interestingly, some metabolites may interact with key metabolic pathways without affecting immune pathways or inflammation. Koh et al. recently identified such a metabolite by characterizing the bacterial metabolite imidazole propionate as a gut-derived factor regulating insulin signaling (72). The authors analyzed portal vein blood from patients with T2D for potential metabolically active factors. When the authors finally characterized imidazole propionate as a microbially produced histidine-derived metabolite they observed that subjects with T2D not only had higher circulating concentrations of this metabolite but also observed that imidazole propionate affected insulin signaling by activation of p38γ MAPK and phosphorylation of p62 which finally resulted in activation of mechanistic target of rapamycin (mTORC1). This study nicely illustrates how bacterial metabolites besides directing key inflammatory pathways might also control other key pathways of metabolic dysfunction (72). The here discussed metabolites reflect only some recently characterized microbiota-driven or microbiota-derived metabolites highlighting the enormous potential of this rather novel field.
NAFLD: a prototypic systemic inflammatory disease
Low-grade inflammation is a hallmark of many chronic disorders such as chronic liver diseases or T2D and it remains currently unclear which compartments in the body might contribute to this phenomenon. Several NAFLD studies have shown increased circulating inflammatory parameters including cytokines, acute phase proteins, and adhesion molecules especially in NASH patients (73–76). Detectable systemic inflammation in these metabolic “non-communicable” disorders is usually considered sterile and driven mainly by innate immune factors (77, 78). Recent data from microbiome research, however, suggest that the gastrointestinal tract with its harbored microbiota might reflect an important source of inflammatory mediators and metabolites (
Low-grade chronic inflammation is of major relevance for NAFLD patients within and outside the liver. Although NAFLD patients most commonly die because of cardiovascular complications and atherosclerosis (79, 80), death due too liver disease is also frequent. Complications of NAFLD such as NASH, liver cirrhosis, and hepatocellular carcinoma are mainly but not solely inflammation-driven. It is now well-accepted that the amount of fibrosis defines the long-term prognosis of NAFLD-associated liver disease (81, 82), which is in most instances driven by inflammation. Therefore, inflammation substantially contributes to patient outcome both in (liver cirrhosis) and outside the liver (atherosclerosis, cardiovascular complications) in NAFLD.
Inflammatory events in case of NAFLD also have major metabolic consequences i.e., regulation of insulin signaling and insulin resistance. Indeed, insulin resistance has long been assumed to be controlled by inflammatory pathways (83). Many immune factors especially certain proinflammatory cytokines have been demonstrated to affect insulin signaling in various tissues. These studies are, however, dominated by preclinical reports and final prove in humans for such a role is still somewhat missing. Many studies have assessed the role of innate immune factors and cytokines in insulin signaling. We have recently shown, that interleukin 37 (IL-37), a human anti-inflammatory cytokine plays an adipokine-like anti-inflammatory and metabolically beneficial role in metabolic dysfunction (84, 85). Patients undergoing substantial weight loss consequent to bariatric surgery exhibited a massive increase of subcutaneous adipose tissue IL-37 expression similar as observed for adiponectin (84). When using transgenic IL-37 (IL-37tg) mice we observed substantial improvement of metabolic dysfunction in various models of obesity-related disorders including improvement of insulin sensitivity (85). Importantly, we also observed a steady-state IL-37 mRNA expression level in humans that directly correlated with insulin sensitivity and indirectly with degree of inflammation in adipose tissue. Type I interferon signaling induced by innate and adaptive immunity controls inflammatory processes subsequent to infection. The role of type I interferon signaling in metabolic diseases and the development of NAFLD is unclear. We recently assessed the role of type I interferon signaling in tissue-specific type I interferon receptor (IFNAR1) knockout mice (86). Adipose-, but not hepatic tissue-specific deletion of IFNAR1 worsened metabolic functions associated with a HFD characterized by enhanced weight gain, insulin resistance, and an impaired glucose tolerance compared to wild-type mice. Interestingly, deleted type I interferon signaling in myeloid or intestinal-epithelial cells did not modulate susceptibility to metabolic or hepatic disease. This study points out that type I interferon signaling in adipose tissue might play a role by in metabolic disorders such as NAFLD. A detailed discussion of this topic is beyond the scope of this article.
In conclusion, recent data indicates that chronic inflammation possibly derived from the gut microbiota substantially contributes to metabolic disorders such as NAFLD, which is a key event that guides patient outcome.
Liver-derived signals affecting the gut microbiome: bile acids as key players
Whereas, life-long regulation of the composition of the intestinal microbiota is crucial for health and extrinsic factors such as dietary components reflect probably the key confounders, it is increasingly recognized that intrinsic factors with close proximity to the gastrointestinal tract such as bile or pancreatic fluid might be of equal importance (
The primary bile acids cholic acid and chenodeoxycholic acid in humans and muricholic acid in mice are produced in the liver as cholesterol derivates and secreted into the intestine as glycine and taurine conjugates. In the gut, these secondary bile acids interact with various nuclear receptors such as FXR, TGR5, pregnane X receptor, or vitamin D receptor (89). Recently it has been demonstrated that metformin affects the gut microbiota i.e., decreasing B.fragilis concentrations and in parallel resulted in an increase of the murine bile acid glycoursodeoxycholic acid (GUDCA) resulting in inhibition of intestinal FXR activation and respective metabolic benefits (90). Interestingly FXR activation in rodents was required for postoperative improvements in glycemia whereas changes in body weight, food intake, and other factors were unaffected (91). In this preclinical study bile diversion to the ileum improved glucose homeostasis via the FXR-Glp-1 axis and improvements were paralleled by an increase in intestinal Akkermansia muciniphila concentrations (91). We recently demonstrated that after massive weight loss after bariatric surgery (laparoscopic adjustable gastric banding, LAGB) both conjugated and secondary bile acids increased 3 months after LAGB and only one bile acid i.e., glycolithocholic acid sulfate remained significantly elevated even after 1 year (92). Furthermore, changes in bile acids importantly correlated with Glp-1 and fibroblast growth factor 19 levels supporting the notion that bile acid changes after LAGB crucially affect metabolic pathways. Many more studies have demonstrated in the past years that bile acids and derivates are crucial metabolic players and interference at the level of FXR could indeed reflect a promising treatment strategy for NAFLD in the future (93).
Conclusions and Outlook
We discussed several pathways involved in prototypic gut-liver interactions. While a complex gastrointestinal bacterial world exerts and initiates biological processes throughout the body, underlying mechanisms are poorly understood. Studies from the past years have now convincingly shown that NAFLD patients at various stages of their liver disease have a specific gut microbiome signature. It becomes increasingly recognized that especially gram-negative bacteria such as Enterobacteria, Escherichia coli, and Proteobacteria are increased in concentrations and activities and may contribute to the pro-inflammatory phenotype of this disorder. One bacterial product which seems of key importance is endotoxin, which is elevated in advanced NAFLD (94, 95). It is still unclear which intestinal bacteria reflect the major source of this key driver of inflammation.
An equally exciting field is the topic of bacterial metabolites and their relevance in fatty liver diseases. Several excellent studies have proven that such metabolites regulate evolution of hepatic steatosis and insulin signaling. What is also increasingly acknowledged is the fact that gut-liver interactions take place bidirectionally and there exists also a major liver-gut axis meaning that products of the liver affect composition of the gut microbiome. Prototypic factors into this direction are mainly bile acids and especially secondary bile acids, which are again regulated by the gut microbiota. Bile acids and derivates interact and bind to nuclear receptors, which regulate key metabolic pathways involved in NAFLD. From all these studies it becomes evident that the interaction of gut bacteria, immunity and metabolic pathways are key to our understanding of this frequent liver disorder. Deciphering disease processes will allow to develop innovative treatment modalities that are desperately needed for NAFLD.
Statements
Author contributions
All authors listed have made a substantial, direct and intellectual contribution to the work, and approved it for publication.
Funding
This work was supported by the excellence initiative VASCage (Centre for Promoting Vascular Health in the Ageing Community), an R&D K-Centre (COMET program - Competence Centers for Excellent Technologies) funded by the Austrian Ministry for Transport, Innovation and Technology, the Austrian Ministry for Digital and Economic Affairs and the federal states Tyrol, Salzburg and Vienna.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
NAFLD, microbiota, inflammation, diabetes, liver
Citation
Grabherr F, Grander C, Effenberger M, Adolph TE and Tilg H (2019) Gut Dysfunction and Non-alcoholic Fatty Liver Disease. Front. Endocrinol. 10:611. doi: 10.3389/fendo.2019.00611
Received
12 June 2019
Accepted
22 August 2019
Published
06 September 2019
Volume
10 - 2019
Edited by
Pierre De Meyts, Duve Institute, Catholic University of Louvain, Belgium
Reviewed by
Anne-Francoise Burnol, Institut National de la Santé et de la Recherche Médicale (INSERM), France; Heike M. Hermanns, Universitätsklinikum Würzburg, Germany
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Copyright
© 2019 Grabherr, Grander, Effenberger, Adolph and Tilg.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Herbert Tilg herbert.tilg@i-med.ac.at
This article was submitted to Molecular and Structural Endocrinology, a section of the journal Frontiers in Endocrinology
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