Abstract
Cross-presentation of cell-associated antigens (Ag) plays an important role in the induction of anti-tumor responses, autoimmune diseases, and transplant rejection. While several dendritic cell (DC) populations can induce pro-inflammatory CD8+ T cell responses to cell-associated Ag during infection, in the absence of infection, cross-priming of naïve CD8+ T cells is highly restricted. Comparison of the main splenic DC populations in mice – including the classic, cross-presenting CD8α DC and the recently described merocytic DC (mcDC) – reveals that cross-priming DCs display a distinct phenotype in cell-associated Ag uptake, endosomal/lysosomal trafficking, lysosomal acidification, and Ag persistence compared to non-cross-priming DC populations. Although the CD8α DC and mcDC subsets utilize similar processing pathways to cross-present cell-associated Ag, cross-priming by CD8α DCs is associated with IL-12 production, while the superior priming of the mcDC is critically dependent on type I IFN production. This discussion illustrates how subtle differences in internal processing pathways and their signaling sequelae significantly affect the duration of Ag cross-presentation and cytokine production by DCs, thereby shaping the ensuing CD8+ T cell response.
Introduction
Every day millions of cells die in the human body, producing cellular corpses and material that must be disposed of. Dead cells originating from the body’s surfaces can simply be sloughed off with little or no consequence. In contrast, cells that die within tissues must be removed, a task typically undertaken by phagocytic cells of the immune system. This system has dual purpose. If the cell death is necrotic, due to viral or bacterial infection, the clearance of diseased cells assists in removing the insult and activating specific immunity against the offending cell-associated Ag. If the cell death is a part of natural tissue homeostasis, i.e., apoptotic cell death, the clearance of dead cells can function to maintain peripheral tolerance and prevent autoimmune disease. Within this context apoptotic cell death is historically considered an immunologically silent event.
Though seemingly simple in concept, continuing research on apoptosis and the clearance of apoptotic cells has revealed the complexity of this system. As a result, a multitude of factors have been identified that influence whether tolerance or immunity is established against cell-associated Ag upon uptake of apoptotic cells. These factors include, but are not limited to, the type of cell that is dying, how death was induced, in which tissue the death occurred, the recognition and uptake by phagocytic cells, the type of phagocyte involved in the uptake, and the resulting micro-environment (Poon et al., ). For example, cells treated with irradiation or chemotherapy become apoptotic but tend to be immunogenic (Ronchetti et al., ; Janssen et al., ; Green et al., ; Reboulet et al., ; Ferguson et al., ). In this context immunity probably results from the irradiation or chemical induced release of damage associated molecular proteins (DAMPS) such as high mobility group box 1 (HMGB1), uric acid/mono-sodium urate crystals, heat shock proteins, and nucleotide structures from the dying cell (Green et al., ; Poon et al., ). These signals, similar to those released during necrotic cell death, provoke immunity instead of tolerance. Though important, signals released by the dying cell do not fully explain immunologic outcome. Studies wherein identically treated cells induce tolerance if injected intravenously, yet immunity if injected subcutaneously illustrated how the location of cell death and, more importantly, the type of antigen presenting cell (APC) performing the uptake crucially affect immunity or tolerance. Subsequent studies correlated this induction of immunity or tolerance specifically with the dendritic cell (DC) subset that took up and processed the injected cells (Belz et al., ; Ferguson et al., ; Iyoda et al., ; Green et al., ).
Dendritic Cells and the Presentation of Cell-Associated Antigens
In the evolution of the vertebrate immune system, DCs have filled the role of premier APC. All APCs characteristically take up, process and present exogenous antigens to CD4+ T cells within the context of MHC class II molecules. Uniquely, DCs are additionally able to shuttle a portion of “eaten” antigens into the MHC class I restricted pathway, a pathway that in all other cell types is reserved for presentation of endogenous proteins. In DCs, this cross-presentation process allows exogenous Ag, including cell-associated Ag originating from dead and dying cells, to be effectively presented to CD8+ T cells. Seminal work over the last decade addressing uptake and processing of cell-associated Ag by phagocytes has elucidated common mechanisms utilized by cross-presenting DC subsets that influence cross-presentation and the resulting immune response. Successful cross-presentation is characterized by specific uptake, distinct endosomal/lysosomal trafficking, delayed lysosomal acidification, and Ag persistence compared to non-cross-priming DC populations. Also, the cytokine profile by which each DC subset responds to uptake of dying cells influences these processes and the final potency of the Ag-specific response.
Mouse splenic DC subsets during steady state
As a result of ongoing research, the system by which DCs are classified continues to change. Currently, as new subsets are discovered, characterization often places them into one of two groups: steady state conventional DCs (cDCs) or non-conventional DCs (Kushwah and Hu, ). This initial classification is based on lineage, function, and location, with each subset being identified by the presence or absence of different cell surface markers. Steady state cDCs, as the name suggests, are present and function continually, even during inflammation, and include subsets found in the lymphoid organs as well as migratory subsets present in the tissues. Non-conventional DCs are mostly comprised of monocyte-derived DCs subsets, populations which are highly enriched during inflammation and thus are often referred to as inflammatory DCs (Shortman and Liu, ; Heath et al., ; Shortman and Naik, ; Liu et al., ; Kushwah and Hu, ). DCs found in non-lymphoid tissue regardless of whether formally categorized as steady state conventional or monocyte-derived non-conventional, are typically classified by the tissue in which they are found and the presence or absence of CD103, CD11b, langerin (for skin associated subsets), or the chemokine receptor CX3CR1 (Kushwah and Hu, ). Though some of these subsets are capable of cross-presentation, this review focuses on those subsets present in the spleen. We refer those interested to several publications that more completely dissect the lineages, functionality and surface expression of various markers in these other DC populations (Shortman and Liu, ; Heath et al., ; Shortman and Naik, ; Liu et al., ; del Rio et al., ; Liu and Nussenzweig, ; Shortman and Heath, ; Kushwah and Hu, ). Plasmacytoid DCs (pDCs), a subset also present in the spleen during steady state, are functionally distinct from both cDCs and non-conventional subsets, but possess a common precursor with cDCs subsets. In spite of this connected lineage, functional differences between cDCs and pDCs complicates the exact placement of the latter subset and, thus, has led to controversy. As a result, some researchers place pDCs with non-conventional DCs while others place them within a distinct group called pre-DCs or within their own category (Shortman and Liu, ; Shortman and Naik, ; Liu and Nussenzweig, ; Kushwah and Hu, ).
Conventional DCs and pDCs present in spleen and lymph nodes are distinguished by differential expression of CD11c, B220, and PDCA-1. Splenic cDCs lack B220 and PDCA-1 (Figure 1A) and can be further divided into four subpopulations characterized by the presence or lack of various markers (Table 1): (1) CD8α DCs (CD8α+, CD4−, CD11b−); (2) CD11b DCs (CD8−, CD4−, CD11b+); (3) CD4 DCs (CD8−, CD4+, CD11b+); or (4) merocytic DCs (mcDCs)/CD8−, CD4−, CD11b− DC (Figure 1A; Janssen et al., ; Reboulet et al., ; Shortman and Heath, ; Hennies et al., ; Kushwah and Hu, ). We have investigated, and thus will discuss in this review, the uptake of cell-associated Ag under steady state conditions and their cross-presentation within four splenic DC subgroups – CD8α DCs, CD11b DCs (which includes the CD4+ subset), mcDC/CD8−, CD4−, CD11b− DC, and pDCs.
Figure 1
Table 1
| CD8+ DC | CD11b+ DC | CD8− CD4− mcDC | pDC | Reference | |
|---|---|---|---|---|---|
| Itgax/CD11c | +++ | +++ | +++ | ++ | Hashimoto et al. ( |
| itgam/CD11b | − | +++ | + | − | Vremec et al. ( |
| Sirpa/CD172a | −/+ | +++ | −/+ | +/− | Lahoud et al. ( |
| CD4 | − | ++ | − | − | Crowley et al. ( |
| CD8a | +++ | − | − | − | Shortman and Heath ( |
| itgae/CD103 | ++ | − | − | − | Bedoui et al. ( |
| CD205 | ++ | − | −/+ | − | Kraal et al. ( |
| XCR1 | ++ | − | + | − | Crozat et al. ( |
| IRF8 | ++ | − | ++ | ++ | Aliberti et al. ( |
| IRF4 | −/+ | ++ | −/+ | −/+ | Hashimoto et al. ( |
| MHC II | +++ | +++ | +++ | ++ | Wilson et al. ( |
| CD80 | + | + | + | − | Shortman and Heath ( |
| CD86 | ++ | + | ++ | +/− | Shortman and Heath ( |
| CD40 | + | ++ | + | + | Shortman and Heath ( |
| TLR3 | +++ | + | +++ | − | Edwards et al. ( |
| TLR7 | − | + | − | ++ | Edwards et al. ( |
| TLR9 | + | + | + | ++ | Edwards et al. ( |
| Clec9a | +++ | + | +++ | + | Sancho et al. ( |
| CLec12a | +++ | + | nd | nd | Lahoud et al. ( |
| Havcr1/tim1 | − | − | − | +++ | Kobayashi et al. ( |
| Havcr2/tim3 | +++ | +++ | +++ | − | Nakayama et al. ( |
| Tim 4 | + | +/− | + | + | Albacker et al. ( |
| Treml2 | + | + | ++ | +++ | Hemmi et al. ( |
| Treml4 | +++ | ++ | ++ | − | Hemmi et al. ( |
| CD36 | +++ | ++ | +++ | +/− | Albert et al. ( |
| MR | − | + | − | − | Burgdorf et al. ( |
| Lox1 | + | − | + | − | Delneste et al. ( |
| FcγR2b | + | ++ | + | + | Amigorena ( |
| Cystatin C | ++ | + | ++ | + | El-Sukkari et al. ( |
| NOX2 gpphox91 | +/− | ++ | + | nd | Savina et al. ( |
| CYTOKINE INDUCTION UPON UPTAKE OF APOPTOTIC CELLS | |||||
| IL-12 | − | − | − | − | Morelli et al. ( |
| IL-10 | − | ++ | − | − | Hennies et al. ( |
| TGFβ | +/− | ++ | − | − | Hennies et al. ( |
| Type I IFN | − | − | ++ | − | Janssen et al. ( |
Characteristics of splenic DC subsets.
Data compiled from indicated literature and unpublished DNA arrays.
nd, not done.
CD8α DCs
The CD8α DC, classically considered to be the major cross-presenting DC subset in the mouse spleen, is located in the T cell zone of the spleen and has repeatedly been shown to effectively cross-present beads, soluble Ag, and cell-associated Ag (Figures 1B,C; den Haan et al.,
CD11b DCs
Splenic CD11b DCs reside in the marginal zone of the spleen and predominantly co-express CD4, DCIR2, and Sirp-α (Crowley et al.,
While CD11b DCs display great potential for phagocytosis of proteins, beads/particles, and bacteria, their capacity for cross-presentation under steady state conditions is poor. Moreover, CD11b DCs display weak phagocytosis of apoptotic cells and no role has been described for these cells in cross-presentation to cell-associated Ag under steady state conditions (Figures 1A–C; den Haan et al.,
Plasmacytoid dendritic cells
Splenic pDCs are defined by strong expression of both B220 and PDCA-1 and are predominantly located in the T cell area and red pulp. While there is some discussion on the exact delineation of pDC with regard to shared precursors with other cDC, research has shown the requirement for the transcription factors E2-2, IRF8, and Spi-B (Schiavoni et al.,
Merocytic DCs/CD8−, CD4−, CD11b− DC
Over the recent years various laboratories have identified splenic DCs that lack the conventional markers (CD8α−, CD11b−, CD4−; Figures 1A–C; Hochrein et al.,
During the course of our work we have named the CD8α− CD11b− CD4− DC in the naïve spleen mcDCs due to the smaller particles (meros = particle) characteristically taken up by these cells (Figure 2C) and will use this name throughout this review (Reboulet et al.,
Figure 2

Splenic DC subsets differentially take up cellular particles influencing particle frequency and size. (A) Transmission electron microscopy (TEM) images characterizing uptake of irradiated splenocytes by purified DC subsets after 4 h co-culture: N, nucleus; arrows, apoptotic material. (B,C) ImageStream analysis of the frequency and size of internalized CFSE-labeled particles after 20 h co-culture with CFSE-labeled irradiated cells.
Merocytic DCs take up cellular material from dead and dying cells, though be it less than CD8α DCs (Figure 1A). Though mcDCs take up less apoptotic cell material they show extended cross-priming of CD8+ T cells due to prolonged storage of cell-associated Ag (Reboulet et al.,
Merocytic DC have been associated with the breaking of tolerance and acceleration of immune responses to cell-associated Ags. Treatment of tumor bearing mice with mcDC previously exposed to irradiated tumor cells, resulted in tumor suppression and increased host survival through the activation of naïve tumor-specific CD8+T cells as well as the reinvigoration of tumor-specific T cells that had been rendered non-responsive by the tumor in vivo (Reboulet et al.,
Recognition and Differential Uptake of Dead and Dying Cells
Though little is known regarding the influence of clathrin-mediated uptake vs. phagocytosis or macropinocytosis on cross-presentation pathways of cell-associated Ag, uptake and cross-presentation of cellular material is largely thought to be receptor mediated (Erwig and Henson,
Recognition through phagocytic receptors
As a cell becomes apoptotic, the steady state “don’t eat me” signals of viable cells are lost and replaced through a series of morphological and biochemical changes (Elward and Gasque,
Cross-presentation, but not necessarily cross-priming, of cell-associated Ag is generally enhanced when uptake is mediated by DEC205 (Bonifaz et al.,
Consistent with receptor-mediated uptake leading to cross-presentation, both CD8α DCs and mcDCs appear to take up cellular material via a classical receptor-mediated phagocytic process. Transmission electron microscopy (TEM)of CD8α DCs and mcDCs exposed to dying cells predominantly shows the presence of small particles of phagocytosed material tightly surrounded by a double membrane (Figure 2A). In contrast, CD11b DCs appear to use a more macropinocytic mechanism resulting in the uptake of larger particles and inclusion of extracellular solutes and fluids (Figures 2A,C).
Particle size and frequency
Our studies and the work of others indicate that the method of uptake, i.e., receptor-mediated phagocytosis vs. macropinocytosis, influences the particle size taken up by APCs (Rejman et al.,
Transmission electron microscopy combined with ImageStream technology, a flow cytometric based method that allows for quantitative image analysis on vast number of cells, confirmed that cross-presenting splenic DCs differentially take up material from dead and dying cells as measured by total particles per cell and the overall particle size. CD8α DCs and mcDCs not only take up particles of dying cells more readily, but also preferentially take up smaller particles than CD11b DCs (Figures 2B,C), a size differential that most likely facilitates the entrance of cell-associated Ag into cross-presentation pathways (Fifis et al.,
Interestingly, upon exposure to dead and dying cells, mcDCs generally take up a comparable number of particles/cell to CD8α DCs, but these particles are typically smaller in size (Figures 2B,C; Reboulet et al.,
Antigen Trafficking, Processing, and Loading
Antigen trafficking and vesicle acidification
Upon uptake, cellular material from dying cells is found within early phagosomes – or sorting endosomes – characterized by the presence of the early endosomal markers EEA-1, Rab5, PI(3)P, syntaxin 13, transferrin, and vesicle-associated membrane protein 3(VAMP-3; Vieira et al.,
Cellular material taken up by CD11b DCs rapidly ends up in fully matured phagolysosomes (Figures 3A–C; Savina et al.,
Figure 3

Unique trafficking of phagocytosed material in cross-presenting DCs. (A) ImageStream analysis of the colocalization between internalized Violet labeled-irradiated cells and PE-labeled EEA-1 or LAMP-1 at 4 h (n > 950 events/group). Colocalization was based upon Bright Detail Similarity score between the two markers. Scores of 0–1 represent minimal colocalization. As the markers of interest become more colocalized the score increases to reflect this similarity. (B) ImageStream analysis of the frequency of CFSE-containing DCs and the number of CFSE+ particles per DC 2 h and 20 h after the removal of irradiated CFSE-labeled cells. Decreases in particle frequency and number/cell were attributed to acidification of the endosome and the subsequent CFSE-quenching. (C) Differences in lysosomal acidification rate between DC populations as determined by flow cytometric analysis of dual-labeled pH-indicating beads.
As endosomal acidification causes the robust activation of lysosomal proteases and the subsequent destruction of Ag, acidification is considered to be poorly compatible with cross-presentation. Forced lysosomal acidification dramatically reduces cross-presentation while prevention of acidification has been shown to enhance cross-presentation (Savina et al.,
Acidification studies indicate that endosomes with cell-associated material in both CD8α DCs and mcDCs maintain a similar high/neutral pH for several hours post uptake of cell-associated antigens, which correlates with Ag persistence. Compared to CD8α DCs, mcDCs show decreased lysosomal acidification over a prolonged period of time, resulting in a less acidic endosomal compartment after 20 h (Figures 3B,C; Reboulet et al.,
In both populations the treatment with diphenylene iodonium (DPI) – an inhibitor of flavin-containing enzymes such as NOX2 – accelerates lysosomal acidification, prevents Ag persistence, and rapidly decreases the cross-presenting capacity of both CD8α DCs and mcDCs, emphasizing the importance of endosomal acidification in their cross-presentation (Reboulet et al.,
The mechanisms that govern the prolonged Ag persistence in mcDC remain unclear as the biogenesis of phagolysosomes still involves many poorly understood processes. Transcriptome analysis of CD8α DCs and mcDCs showed ≈20-fold higher expression of Cybb (NOX2) in mcDCs. In addition, differential expression of various R- and Q-SNAREs (soluble N-ethyl maleimide sensitive-factor attachment protein receptors), sorting nexins, and V-ATPases that have been suggested to play a role in vesicle transport and fusion are seen (Vieira et al.,
Processing and MHC I loading
As intact internalized Ag fill the cell, there are two proposed pathways by which they are cross-presented: the vacuolar and cytosolic pathways. The vacuolar pathway hypothesizes that cross-presented Ag are fully processed within the endosomes. The aminopeptidase IRAP facilitates the production of MHC class I-specific peptides that bind to the MHC molecule within the endosome. This pathway appears to be cathepsin S dependent and TAP independent (Shen et al.,
Multiple studies indicate a dominant role for the cytosolic pathway in the processing of cell-associated Ag by cross-presenting DC subsets (Figure 4; Shen et al.,
Figure 4

Proteasomal inhibitors effectively block cross-presentation in both CD8α DC and mcDC. Splenic DC were incubated with irradiated actmOVA cells in the presence of indicated inhibitors. After 20 h, samples were fixed, sorted, and cultured with OVA-specific B3Z T cells to assess the cross-presentation of cell-associated antigens. Cells pulsed with OVA257–264 prior to fixation were used to demonstrate priming capacity. Responses are normalized to control treatment.
The maintenance of a more neutral pH correlates with delayed or reduced lysosomal protease activation. Cross-presenting DCs characteristically express lower levels of proteases and higher levels of protease inhibitors as compared to other APCs (Lennon-Dumenil et al.,
Effect of Autocrine Cytokine Production
The cytokines produced by DCs in the context of cellular death and clearance drastically influence Ag processing, presentation and, subsequently, the capacity of the DC to prime T cells against cell-associated Ag (Voll et al.,
Upon exposure to apoptotic cells, CD11b DCs induce the anti-inflammatory cytokines IL-10 and TGF-β (Hennies et al.,
IL-10 and TGF-β have potent immunosuppressive properties and promote the induction of tolerance. Both have been shown to reduce Ag presentation by regulating the transcription of the class I heavy chain, β2M, tapasin, TAP, and components of the proteasome (Geiser et al.,
Merocytic DCs produce pro-inflammatory cytokines in response to apoptotic cells without the apparent need for additional signals. While IL-1β is traditionally incorporated in maturation cocktails in the generation of human DCs, its does not significantly affect cross-presentation or cross-priming by mcDCs. mcDCs lacking IL-1RI or MyD88 display CD8+ T cell priming capacity similar to WT mcDCs (Janssen, unpublished). In contrast, type I IFN production by the mcDCs, and resulting autocrine signaling, is critical for this subset’s enhanced cross-presentation and activation of CD8+ T cells against cell-associated Ag (Reboulet et al.,
Figure 5

Autocrine type I IFN signaling by mcDC affects CFSE loss on phagocytosed cellular particles suggesting changes in the lysosomal acidification rate. (A) CD8α DCs and mcDCs from indicated strains were exposed to irradiated actmOVA cells in vitro, purified and transferred into WT recipients. Seven days later the endogenous CD8+ T cell response was analyzed. (B,C) ImageStream analysis comparing the frequency and size of internalized CFSE-labeled particles in CD8α DCs and mcDCs from WT and ifnar−/− mice. (D) Loss of delayed acidification in ifnar−/− mcDC as determined by ImageStream analysis using CFSE-labeled irradiated cells and a pulse-chase approach.
Image stream analysis of WT and ifnar−/− CD8α DCs and mcDCs exposed to dying cells in vitro indicated that type I IFN sensing did not affect the capacity for phagocytosis by either subset with regard to the frequency of phagocytosing cells, the number of particles per cell, or particle size (Figures 5B,C). However, pulse-chase studies indicated the absence of type I IFN sensing accelerated CFSE loss, suggesting increased endosomal acidification, and significantly increased degradation of endosomal materials in mcDCs (Figure 5D). This is in line with recent findings of Lorenzi et al. (
The concept of type I IFNs affecting endosomal pH and regulating Ag retention provides an intriguing concept that could explain why so many DC populations that fail to cross-present under steady state conditions are capable of doing so under inflammatory conditions associated with type I IFNs (Di Pucchio et al.,
Of Mice and Men
While it is possible to perform extensive analysis on mouse DCs through the use of transgenic mice and the ability to remove specific organs, human DC studies are hampered by the limited availability of human lymphoid tissue and differences in DC surface markers. However, recent research indicates the existence of various human counterparts that – albeit phenotypically different – have functional similarities to mouse DCs. While the details on cross-presentation by human DCs are addressed elsewhere in this issue, it is noteworthy that cross-priming has been observed by human pDCs and the “CD8α DC”-like DCs that expresses BDCA3, XCR1, DNGR1/Clec9A (Hoeffel et al.,
Concluding Remarks
Under steady state conditions, cross-presentation of cell-associated Ag is a continuous process that is imperative for the maintenance of peripheral tolerance. While great strides have been made in the elucidation of the mechanisms that govern cross-presentation and subsequent cross-priming, there are still many questions to be answered. Little is known about the proteins that orchestrate vesicle composition and trafficking or the signals involved in the recruitment of these proteins. It is likely that these processes are influenced by the composition and “state of decay” of the dying cells, the receptors involved in uptake, and the nature and maturation state of the DC. Moreover, in vivo, signals in trans provided by bystander cells can significantly affect intrinsic mechanisms of cross-presentation by DCs. Although elucidation of these processes may be a daunting task, increased mechanistic insight into these pathways will have tremendous therapeutic potential in the fields of autoimmune disease, transplantation, and cancer.
Statements
Acknowledgments
The authors would like to thank Dr. C. Karp for critically reading the manuscript. This work is supported by NIH grant CA138617 (NCI) and AI079545 (NIAID) to Edith M. Janssen.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
dendritic cell, cross-presentation, cell-associated antigen, type I IFN, antigen processing
Citation
Thacker RI and Janssen EM (2012) Cross-Presentation of Cell-Associated Antigens by Mouse Splenic Dendritic Cell Populations. Front. Immun. 3:41. doi: 10.3389/fimmu.2012.00041
Received
09 December 2011
Accepted
19 February 2012
Published
14 March 2012
Volume
3 - 2012
Edited by
Christian Kurts, Friedrich-Wilhelms-Universität Bonn, Germany
Reviewed by
Daniel Robert Engel, University Clinic of Bonn, Germany; Carlos Ardavin, Centro Nacional de Biotecnologia/Consejo Superior de Investigaciones Científicas, Spain
Copyright
© 2012 Thacker and Janssen.
This is an open-access article distributed under the terms of the Creative Commons Attribution Non Commercial License, which permits non-commercial use, distribution, and reproduction in other forums, provided the original authors and source are credited.
*Correspondence: Edith M. Janssen, Division of Molecular Immunology, Cincinnati Children’s Hospital Research Foundation, University of Cincinnati College of Medicine, Room S5.419, 3333 Burnet Avenue, Cincinnati, OH 45229, USA. e-mail: edith.janssen@cchmc.org
This article was submitted to Frontiers in Antigen Presenting Cell Biology, a specialty of Frontiers in Immunology.
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