Abstract
Recent findings point toward diet having a major impact on human health. Diets can either affect the gut microbiota resulting in alterations in the host’s physiological responses or by directly targeting the host response. The microbial community in the mammalian gut is a complex and dynamic system crucial for the development and maturation of both systemic and mucosal immune responses. Therefore, the complex interaction between available nutrients, the microbiota, and the immune system are central regulators in maintaining homeostasis and fighting against invading pathogens at mucosal sites. Westernized diet, defined as high dietary intake of saturated fats and sucrose and low intake of fiber, represent a growing health risk contributing to the increased occurrence of metabolic diseases, e.g., diabetes and obesity in countries adapting a westernized lifestyle. Inflammatory bowel diseases (IBD) and asthma are chronic mucosal inflammatory conditions of unknown etiology with increasing prevalence worldwide. These conditions have a multifactorial etiology including genetic factors, environmental factors, and dysregulated immune responses. Their increased prevalence cannot solely be attributed to genetic considerations implying that other factors such as diet can be a major contributor. Recent reports indicate that the gut microbiota and modifications thereof, due to a consumption of a diet high in saturated fats and low in fibers, can trigger factors regulating the development and/or progression of both conditions. While asthma is a disease of the airways, increasing evidence indicates a link between the gut and airways in disease development. Herein, we provide a comprehensive review on the impact of westernized diet and associated nutrients on immune cell responses and the microbiota and how these can influence the pathology of IBD and asthma.
General Introduction
The prevalence of chronic inflammatory diseases affecting mucosal sites such as the intestine and the airways is increasing worldwide (, ). Among these, inflammatory bowel disease [IBD, mainly comprising ulcerative colitis (UC) and Crohn’s Disease (CD)] and allergic asthma are the most relevant. Recent findings point toward potential links between these two pathologies, e.g., histamine and mast cell activity and immunoglobulin E (IgE) production, reviewed in Ref. (). Both diseases have a multifactorial cause, in which environmental factors such as diet and the commensal microbiota are gaining increased attention. In this regard, consumption of the so-called “Westernized” diet is associated with increased risk for IBD () and asthma morbidity (). Westernized diet is characterized by a high content of proteins (derived from fatty domesticated and processed meats), saturated fats, refined grains, sugar, alcohol, salt, and corn-derived fructose syrup, with an associated reduced consumption of fruits and vegetables (, , ). Research in the last decade has uncovered that changes from a diet rich in fibers and low in fats to a diet low in fibers and high in saturated fats directly contributes to the development of obesity, metabolic syndrome, and cardiovascular diseases (, ). Macronutrients (carbohydrates, lipids, and protein) and micronutrients (vitamins and minerals) are required for our body to function and several of these are naturally obtained from our diets and from the resident microbiota. Both patients with IBD and asthma present nutritional problems leading to several complications including anemia, osteoporosis, acute respiratory infections, etc. The link between diet, nutrients and immune responses is embedded in a complex network of signals and has to be considered in the light of other factors including microbial composition, genetic background, and lifestyle, to mention but a few. The advent of high-throughput Next-Generation Sequencing technologies has driven the discovery and dissection of regulatory mechanisms involved in the disease state. In this review, we will focus on the interactions between diets and nutrients associated with Westernized regimes and their impact on the microbiota and immune responses at mucosal interfaces, i.e., the intestines and lungs. We will outline the complex network between nutrients, microbial alterations and abnormal immune responses associated with IBD and asthma.
Table 1 summarizes the impact of dietary factors on host responses. Figure 1 summarizes identified genes associated with IBD and asthma and immune responses. Figure 2 displays the regulatory interaction between diet, mucosal immunity, and commensal microbiota to maintain mucosal homeostasis and the resulting pathology upon loss of balance. Figures 3 and 4 outline the mechanisms targeted by nutrients in the healthy intestine and lung and in the inflamed gut (IBD) and lung (asthma), respectively.
Table 1
| Dietary factor | Inflammatory/immune response | Reference | |
|---|---|---|---|
| Intestine | Lung | ||
| Macronutrients | |||
| Fat | |||
| High-fat diet | Permeability of epithelial barrier ↑ | Neutrophil ↑ TLR4 mRNA ↑ | (, ) |
| Saturated fatty acids | Activation of TLR4↑ | () | |
| n-3 PUFA, e.g., EPA, DHA | PG (series-3) ↑ LK (series-5) ↑ Leukocyte chemotaxis↓ IL-1β ↓, TNFα ↓ Resolvins, Maresins and Protectins↑ | Maternal supplementation reduced Childhood Asthma IL-13 cord blood ↓ Mucus (murine) ↓ CD45+ inflammatory cell infiltrates (murine) ↓ | () (, ) |
| n-6 PUFA, e.g., ARA, linoleic acid | PG (series-2) ↑ LK (series-4) ↑ | Mucus (murine) ↓ | () |
| SCFA, e.g., butyrate | Energy source for colonocytes Barrier function ↑ Peroxisome proliferator-activated receptor γ activation ↑ | Allergy ↓ | (, ) |
| Carbohydrates | |||
| Sucrose | Permeability of epithelial barrier ↑ | Asthma and dental caries ↑ | (–) |
| Fermentable carbohydrates, e.g., fiber | Butyrate production ↑ | SCFA levels ↑ DC maturation ↓ TH2 response ↓ | (, ) |
| Proteins | |||
| Animal-derived proteins, e.g., carnitine | TMAO synthesis ↑ | Asthma exacerbation (cured meats) | (, ) |
| Dipeptides, e.g., alanine–glutamine | Mucin 2 expression ↑ | () | |
| Micronutrients | |||
| Vitamins | |||
| Vitamin A, e.g., RA, β-carrotene | Induction of tolerogenic DC and Tregs ↑ | (, ) | |
| Vitamin D | Cathelicidin production Innate defense toward regulatory state ↑ Ca2+absorption ↑ | Maternal supplementation reduction in airway smooth muscle | (, , ) |
| Vitamin B, e.g., thiamine, folate, cobalamine, pyridoxine | Vitamin B9 deficiency—colonic Foxp3 + Tregs ↓ | Folate deficiency—asthma exacerbations | (–) |
| Minerals | |||
| Iron | Incorporated into iron–sulfur clusters, redox cofactors, or used metalloenzymes | (, ) | |
Dietary factors and host inflammatory responses at mucosal sites.
ARA, arachidonic acid; Ca2+, calcium; DHA, docosahexaenoic acid; EPA, eicosapentaenoic acid; Foxp3, Forkhead-Box-Protein P3; LK, leukotrienes; PG, prostaglandins; RA, retinoic acid; TLR4, toll-like receptor 4; PUFA, polyunsaturated fatty acid; SCFA, short-chain fatty acid; Tregs, T regulatory cells; CD, cluster of differentiation; DC, dendritic cells; IL, interleukin; TMAO, trimethylamine-N-oxide; Th, T helper cell.
Figure 1
Figure 2

Interaction between diet, microbiota, and immune response at mucosal sites. (A) To keep a healthy state, the local microbiota and mucosal immune system are in homeostasis at mucosal sites. The microbiota educates and promotes the maturation of the immune system by induction of pro-inflammatory and anti-inflammatory immune cells, e.g., Th17 (SFB), T regulatory cells (Clostridia spp.), and Th1 (Bacteroides fragilis). Moreover, the immune system surveys microbial activities (e.g., antigen sampling at the mucosal barrier) and responds in a controlled fashion by producing, e.g., antimicrobial peptides, sIgA to prevent tissue damage. The integrity of the mucosal barrier is sustained by bacteria-produced metabolites (e.g., SCFA) such as butyrate resulting in high expression of tight-junction proteins and mucus production, thereby restricting interaction of microbes to the lumen and luminal epitheliums. The diet is involved in all processes, serving the microbiome with fermentable fibers and the immune system and epithelium with essential nutrients, e.g., vitamins and minerals. (B) During pathological conditions, such as inflammatory bowel disease and asthma, the homeostasis at the mucosal barrier is disrupted. A westernized diet, i.e., high in SFA, high ω-6/ω-3 ratio, high sucrose and iron (oral iron supplements), and low in fiber promotes inflammation and growth of pathogenic/pathobiont (disease causing) bacteria in the gut. The microbiota, which is rich in non-beneficial bacteria, favorably induces the maturation of pro-inflammatory immune cells, leading to uncontrolled inflammation resulting in tissue damage of the mucosal compartment. The damaged mucosa and shifted immune response fail to control the microbiota, which exaggerates the pathophysiological state. Under certain conditions, bacteria-derived LPS enters the systemic circulation and further stimulates the immune system toward a pro-inflammatory state. Abbreviations: LPS, lipopolysaccharide; SCFAs, short-chain fatty acids; SFAs, saturated fatty acids; SFB, segmented filamentous bacteria; sIgA, secretory immunoglobulin A; ω-6/ω-3, omega-6/omega-3 fatty acid ratio; Th, T helper.
Figure 3

Schematic illustrating the nutrient factors regulating microbial and host responses in the healthy gut and lung. Homeostatic balance at the mucosa due to a balanced diet rich in fiber allows for regulated interactions between the epithelia and the microbiome. This dialog with the microbiome allows for appropriate epithelial barrier function, mucus secretion, and underlying immune sensing. In the gut, a balanced microbiome generates SCFAs and dietary long chain FAs and the fat-soluble vitamins A and D which induce a tolerogenic mucosal immune state locally at the gut but also systemically and particularly in the lung. The gut-derived SCFAs acetate and propionate enhance DCs, ILC, and macrophage phagocytic function and Tregs balance resulting in the control of lung microbiota and efficient mucocillary clearance of inhaled microbes and particulates. Lung figure adapted from Ref. (
, bacteroides;
, firmicutes;
, barrier integrity.
Figure 4

Schematic illustrating the nutrient factors affecting microbial and host responses in the inflamed gut in inflammatory bowel disease (IBD) and the lung in Asthma. In both IBD and Asthma genetic susceptibility, microbiota, and dietary changes result in disease development and inflammation. Dysfunctional epithelia barrier function allows for malabsorption of nutrients, inappropriate immune sampling, and colonization of the gut by pathobionts and subsequent disease exacerbation. In the lung, environmental triggers stimulate inflammatory and allergic reactions resulting in mucus hypersecretion, epithelia, and tissue remodeling and resulting compromised of lung function. This microenvironment change allows for microbial changes which allow for increased respiratory infections in asthmatic patients. Both IBD and asthma pathogenesis is related to reduced microbiota-derived SCFAs, malabsorption of iron and Vitamins and reduced gut-derived SCFA result in a trend toward an inflammatory sensing of the mucosa associated microbiota. A diet high in SFA increases TLR4 sensing and subsequent inflammatory reactions to the microbiota resulting in disease progression. This dysregulated mucosal inflammation changes the epithelia barrier function and subsequently alters the microbiota of both sensitive immune sites displaying the characteristic phenotypes associated with both IBD and asthma. Lung figure adapted from Ref. (
, bacteroides;
, firmicutes;
, adherent and invasive Escherichia coli (AIEC);
, Bilophila wadsworthia;
, other altered bacterial spp;
, compromised barrier integrity.
IBD—Genetics, Immune Response, and Microbiota
Inflammatory bowel diseases are multifactorial chronic immune-mediated diseases of the gastrointestinal (GI) tract. They often have an early onset and a course which is characterized by intermittent phases of remission and relapses (
Genome-wide association studies have so far identified over 160 genetic loci in IBD, with 30 loci being specific to CD, 23 loci to UC, and 110 loci are associated with both forms of IBD (
In terms of location, CD can affect any part of the GI tract from the mouth to rectum. However, in the majority of patients with CD the inflammation is localized to the distal ileum and proximal colon (62). The inflammation in CD is patchy and often transmural, which can lead to the development of fibrosis, fistulas, fissures, strictures, etc. A dense infiltration with macrophages and lymphocytes and granuloma formation is a typical feature of the disease. Patients with CD present an imbalanced immune response with high expression of innate pro-inflammatory cytokines, including IL-1β, IL-6, and tumor necrosis factor (TNF)-α and a T helper (Th)1 (IL-12-mediated interferon (IFN)γ) and Th17 (IL-17a) profile resulting in an enhanced and uncontrolled immune response (
Asthma—Genetics, Immune Response, and Microbiota
Asthma is an increasingly common heterogeneous chronic inflammatory disease, which places substantial burden on patients, their families, and the community (66). Asthma is characterized by airway immune hyper responsiveness to inhaled environmental particles leading to wheezing, breathlessness, chest tightness, and coughing effecting airway function (http://ginasthma.org/). Worldwide the incidence of asthma, is increasing, with an estimated 300 million affected individuals (http://ginasthma.org/). Once thought to be a childhood disease it is now presenting in respiratory clinics as first time adult onset asthma.
Asthma presents with airway inflammation following exposure to insults such as allergens, pollutants, and microbes (67). The primary site of immune induction is initially the lung epithelium, which interacts with the underlying antigen presenting cells such as DCs, inducing an immune response (Figure 4). Alveolar macrophages in the airway lumen act as clearance and immune sampling mechanisms at the interface between the mucosa and the external environment (68). The immune signaling from epithelial cells and macrophages results in secretion of first order cytokines, such as CXCL8, IFNα, IL-1β, IL-33, TGFβ, and thymic stromal lymphopoietin (TSLP), which induce a rapid immune trafficking and a clearance response which subsequently results in second order cytokine secretion by T cells (69). Activated DCs migrate to the lymph nodes and induce T cell activation (70) (Figure 4). The subsequent T cell immune response can result in either an allergenic Th2/eosinophilic IgE-mediated inflammation or an inflammatory Th1/neutrophilic cell influx into the airway. The Th2 allergenic response involves the interaction of DCs, Th2 cells, and IL-4 producing basophils which induce the expansion of type 2 innate lymphoid cells (ILC2) which also produce the Th2 cytokines, IL-5, IL-9, and IL-13, leading to eosinophil and mast cell trafficking to the lung and goblet cell mucus secretion (70) (Figure 4). IL-4 derived from Th2 cells also induces IgE production by B cells. The mixed Th2 and Th1 neutrophilic or Th2 low asthma is induced by toll-like receptor (TLR) activation resulting in IL-1β secretion and activation of inflammatory Th1 and Th17 cells. These cells release IL-17a and IFNγ, which activate neutrophils and macrophages to release TNFα and induce inflammatory signals. The resulting immune infiltrates induces the symptoms of asthma—bronchoconstriction, mucus production, and the resultant tissue remodeling increasing smooth muscle and collagen deposition (71, 72). The subsequent remodeling results in airway wall thickening, compromised lung function and changes in the lung microbiota (
Several genetic studies have identified asthma susceptibility genes, including IRAK3, SMAD3, ORMDL3, IL-1RL1, IL-13, IL-33, TNFAIP3, and TSLP (76) (Figure 1). Recent studies have highlighted the role of the site of the mutation and allele frequency and the particular site of functionality, such as the asthmatic epithelium, and the epigenetic regulation thereof as being key factors contributing to asthma (77, 78). Studies on DNA methylation, and microRNA modulation of gene expression, are now shedding light on the pathogenesis of this multifactorial disease.
There is increasing evidence that the gut plays a key role in effecting the allergic immune response. Murine models have demonstrated how feeding of gut commensals can reduce allergy symptoms by inducing T regulatory cells (Tregs) which migrate to the lung and reduce the immune response (79, 80). Indeed, antibiotic-mediated disruption of the gut microbiota and mycobiota has been shown to exacerbate allergic asthma symptoms in mice (81, 82). Recently, an elegant study by Arrieta and colleagues found that the relative abundance of the bacterial genera Faecalibacterium, Lachnospiria, Veillonella, and Rothia and Clostridium neonatale are decreased in the gut of children at risk of asthma development (83, 84). These microbes were significantly different between the groups at 3 months of age and the difference decreased as children reached 1 year of age highlighting a colonization window of opportunity and of an appropriate immune education.
Regulation of Microbiota by Diet
Diet has a major impact on human health, whether by affecting the host directly or through changes of the microbial community. The microbial community in the mammalian gut is a complex and dynamic system with a steady state (85), which can be perturbed by many environmental factors, including diet, lifestyle, drugs, thereby changing the host’s physiology (
Diet and Immune Responses in the Adipose Tissue
The adipose tissue is an active endocrine and secondary immune organ consisting of adipocytes, immune cells (T cells and macrophages) and connective/nerve tissue which produces hormones including adipokines [such as leptin and resistin (pro-inflammatory) and adiponectin (anti-inflammatory)], cytokines, and chemokines. The adipose tissue in lean individuals is characterized by an anti-inflammatory cytokine and adipokine profile (e.g., IL-4, IL-10, IL-33, adiponectin) produced by M2 macrophages and Tregs, while obese mice present an initial CD8+ T cell infiltration followed by macrophages resulting in a pro-inflammatory (Th1/Th17 and M1) profile. M1 macrophages secrete pro-inflammatory cytokines, including TNFα, IL-1β, and IL-6 (95). Although a correlation between obesity and IBD is not confirmed [reviewed in Ref. (96)], the cytokine profile of the adipose tissue in patients with IBD and especially in CD patients, is similar to obese individuals exhibiting increased levels of TNFα, IL-6 and leptin and a reduction in adiponectin (97–100). CD adipocytes express TLRs, display a higher presence of commensal bacteria (Enterococcus faecalis) and an increased translocation of intestinal bacteria resulting in an increased C-reactive protein production (101). These findings indicate that adipocytes participate in the antimicrobial response and represent a barrier to maintain homeostasis and link the adipose tissue with innate immune responses (102). A typical feature of patients with CD is an enlarged mesenteric tissue wrapped around the intestine, so-called “creeping fat.” This fat is usually found adjacent to inflammatory lesions, it correlates with disease activity, is characterized by high infiltration of lymphocytes and macrophages, high levels of peroxisome proliferator-activated receptor γ (PPARγ) and TNFα and fibrosis (103–105). PPARγ is a nuclear receptor that controls the expression of a large number of regulatory genes in lipid metabolism, insulin sensitization, inflammation, and cell proliferation (106, 107) and can inhibit the activation of nuclear factor κB (NFκB), mitogen-activated protein kinase (MAPK), and cyclooxygenase 2 (COX-2) pathways leading to reduction of pro-inflammatory mediators (cytokines and prostaglandins). These findings indicate that mesenteric obesity may play an important role in CD pathogenesis. Contrary to IBD, an association between obesity and asthma, with increased asthma disease severity, has been specifically identified in children. Obesity appears to increase injury in the lungs of asthmatic patients by increasing eosinophil numbers to the airway wall and the systemic production of pro-inflammatory cytokines TNFα, IL-6, IL-1 (
Dietary Patterns in IBD and Asthma
Dietary nutrients shape the intestinal environment by having a crucial impact on intestinal microbial populations and immune responses. To date, epidemiological evidence from observational studies indicate that intake of fiber rich food, such as fruits and vegetables, can protect against IBD and asthma. Conversely, this protective effect has not been confirmed in randomized controlled trials. Recently, the evidence for the airway and gut microbiota in effecting asthma development and induction is mounting. Timing of neonatal exposure to microbes and the diversity of the exposing environment and gut metabolites appear to effect asthma development (83). In a seminal work by Gevers et al., microbial alterations in naïve treated pediatric CD patients were correlated with certain microbes, specific location and effect of antibiotic treatment—findings that can pave the way for new CD diagnostic tools (109). The effect of dietary habits on the early development of these diseases is yet to be discovered. In the next section, we summarize studies covering different dietary patterns and their contribution to disease status. For a more comprehensive review on dietary advice and interventions see recent reviews (
Fat and Sucrose
A recent report from the European Prospective Investigation in Cancer (EPIC) study, did not identify a correlation between body mass index (a measure of obesity) and IBD morbidity (113), therefore proposing that a hypercaloric diet per se is not enough to trigger the development of IBD. Epidemiological studies indicate an increased risk of IBD is associated with a higher consumption of red and/or processed meat, dietary fat [especially n-6 polyunsaturated fatty acids (PUFAs)] and low levels of vitamin D (VitD) (
Dairy Products
Dairy products are a major source of SFA present in our diets. In a Japanese study, an increased incidence of CD was strongly correlated to milk protein (124). Furthermore, an increase in cheese consumption is associated with an increased risk of both UC and CD (125). In line with these findings, IL-10−/− mice fed a saturated milk fat-derived diet resulted in an increased severity of colitis associated with a colonic Th1 profile and presence of CD4+ IFN-γ+ cells in the mesenteric lymph nodes (MLNs) as a result of blooming of an opportunistic bacteria Bilophila wadsworthia (126) (Figure 4). Interestingly, WT mice fed milk fat diet and presenting a blooming of B. wadsworthia did not develop colitis, indicating the impact of genetic predisposition on the subsequent inflammatory response. Of note, 20% of patients with UC benefited from excluding milk and cheese from their diet (127). These collected data indicate that dairy products may play a role in IBD pathology. In contrast to IBD, a decreased asthma risk is associated to milk fat (117, 118). Additionally, it has been reported children who consumed raw milk during childhood show a reduced risk of developing atopy and/or asthma (128–130). The protective effect of raw milk has been speculated to be due to improvement in nutrition, prevention of lactose intolerance, or the presence of “good” bacteria. However, the topic is still debatable and more studies are needed.
Emulsifiers
Processed foods have been identified as a risk factor for IBD (
Fibers, Vegetables, Fruits, and Fish
In contrast to dietary fats, diets rich in fish (n-3 PUFAs), fermentable fibers and vegetables and fruits lower the risk for IBD (
In asthma, a high-fiber intake in late pregnant mothers was correlated with high serum acetate levels and resulted in lower infant GP visits for cough or wheeze (
Intake of oily fish, such as salmon, sardines, herring, tuna, and mackerel, which are rich in n-3 FAs, have shown a potential benefit in preventing asthma in children and in patients with UC, while no beneficial effect in adults with asthma was reported (145, 146).
Nutrients and Their Impact on Microbiota and Immune Responses at Mucosal Sites
Recent evidence has identified the existence of a cross talk between the host and the commensal microbiota within the gut. In this dialog, nutrients play an important role either by directly interacting with the host via the epithelium or the intestinal immune system or indirectly, by modulating the composition of the commensal microbiota which in turn will interact with the immune system, and vice versa (Figure 2A). The immune system will react promptly and adapt depending on the microbiota (commensal, pathobionts, and pathogens) and the diet (prebiotics, supplements, or detrimental nutrients). The worldwide increased incidence of IBD and asthma has been hypothesized to be associated with changes in dietary habits, i.e., westernized life style. In the following sections, we will outline several important macro- and micronutrients associated with diets and their effect on immune responses at mucosal sites important in health and in IBD and asthma.
Macronutrients
In this section, we will summarize the impact of the main macronutrients fat, carbohydrates and proteins on immune responses and microbiota (Table 1).
Fats
Under this section, we will outline the impact that saturated-, monounsaturated-, and PUFAs have on immune and microbial responses associated with IBD and asthma.
Saturated Fatty Acids
Fatty acids belonging to SFAs and containing 12 or less carbon (CX) atoms, include carprylic acid (C8:0), capric acid (C10:0), and lauric acid (C12:0), are found in vegetable oils, cocoa butter, palm oil. SFAs containing more than 12 carbon atoms include myristic (C14:0), palmitic acid (C16:0), stearic acid (C18:0) which can be found in lard, butter, beef, pork, chicken fats, eggs, and vegetable oils (147).
Evidence exists that SFA can act as pro-inflammatory mediators, e.g., as ligands for TLR4 (148, 149). Potential mechanisms by which SFAs elicit a TLR4-induced inflammatory response have been recently reviewed (
To date, mechanistic studies on saturated fats in human IBD are scarce and, therefore, much of our knowledge on SFAs and intestinal inflammation emanates from studies in experimental models. TNFΔARE mice fed a palm oil-based high-fat diet for up to 12 weeks resulted in an initial acceleration of ileitis followed by worsening of proximal colitis associated with loss of TJ protein occludin in the distal ileum, endotoxin translocation, and increased infiltration of DCs and Th17 cells into the lamina propria but without the development of obesity or obesity-associated metabolic features (154). Similarly, Mdr1a−/− mice fed a lard-based high-fat diet for 12 weeks led to an exacerbation of spontaneous colitis associated with elongated crypts, loss of goblet cells, and infiltration of immune cells. Contrary to TNFΔARE mice, Mdr1a−/− mice developed obesity as characterized by increased adiposity and presence of foamy macrophages, while WT mice did not (155). Rats fed a diet containing capric and lauric acid followed by DSS-induced colitis, developed worse colitis associated with a higher colonic myeloperoxidase activity and a pro-inflammatory cytokine profile as well as a reduction in goblet cells (156). Overall, these findings indicate that the type of SFA diet, microbiota status, diet regimen, and/or the genetic background of the animals determine the development of intestinal inflammation and obesity, suggesting that different dietary-induced mechanisms regulate these two conditions. In asthma, SFA have been shown to effect symptoms and immune activation, e.g., by inducing a neutrophilic inflammation and suppressing bronchodilator recovery in asthmatic patients (
Monounsaturated Fatty Acids and Derived Oils
Monounsaturated fatty acids, including palmitoleic acid (C16:1) and oleic acid (C18:1, OA) are normally found in macadamia nuts, blue-green algae, olive oil, canola oil, beef tallow, lard, and avocado.
Diets rich in MUFA appear to reduce LDL cholesterol and potentially increase high-density lipoprotein (HDL) cholesterol (157), and palmitoleate treatment of M1 macrophages induce an anti-inflammatory M2 profile (158) indicating an anti-inflammatory capacity of MUFAs. The specific role of MUFAs in IBD and asthma remains inconclusive. For example, a prospective study by de Silva and colleagues showed that a dietary oleic acid was inversely associated with UC development (114), while palmitoleic and oleic acid treatment of polarized intestinal epithelial cells impaired epithelial barrier function (159). MUFA and oleic acid intake indicated an increased risk of wheeze and non-atopic asthma, respectively (160). Extra virgin olive oil, high in MUFAs, contains highly bioactive components which are present in the unsaponifiable fraction (UF). Beneficial effects of UF and olive oil were demonstrated in an acute DSS model of colitis and in mice with C. rodentium induced colitis. Disease amelioration included alleviation of oxidative stress, reduction of pro-inflammatory proteins and increased levels of intestinal alkaline phosphatase, which can de-phosphorylate bacterial LPS (161–163). In line with these findings, isolated blood and intestinal T cells from UC patients treated with UF resulted in a reduction in T cell activation, β7 integrin expression and IFNγ production as well as induction of apoptosis (164). Findings from these studies indicate MUFA exert both pro- and anti-inflammatory activities in these mucosal conditions.
Polyunsaturated Fatty Acids
Polyunsaturated fatty acids are FAs containing more than one double carbon bonds. Therefore, naturally, they are more prone to oxidation and oxidized LDL synthesis. Long chain PUFAs are divided in two main groups; omega-3 (n-3) PUFAs including—alpha-linolenic acid (ALA, C18:2), docosahexaenoic acid (DHA, C22:6), and EPA (C20:5); and omega-6 (n-6) PUFAs including—linoleic acid (LA, C18:3), and arachidonic acid (ARA, 20:4). LA and ALA are referred to as essential FAs as they are the precursors of ARA, EPA, and DHA. DHA and EPA compete for the enzymes and products of ARA metabolism whereby they can antagonize the formation of inflammation related eicosanoid mediators (165, 166).
Arachidonic acid is the primary n-6 PUFA found in inflammatory cells and is important for the production of inflammatory eicosanoids. ARA is formed out of LA which is further converted to prostaglandins [e.g., prostaglandin E2 (PGE2), leukotrienes (LTBD4), and other lipoxygenase or cyclooxygenase products (COX1/-2)], the so-called eicosanoids, all of which have pro- and anti-inflammatory in addition to atherogenic and pro-thrombotic effects (166). PGE2 is one of the key prostaglandins produced in the intestine where it has dual functions: (1) a pro-inflammatory role, e.g., it is produced by macrophages and neutrophils as a response to inflammatory stimuli and (2) a regulatory role, by inducing immune tolerance, independent of IL-10 or Tregs (167).
n-3 PUFAs are primarily sourced from the human diet, with DHA and EPA especially sourced from fish (e.g., salmon) and ALA from seed oils (e.g., walnut, linseed oil). Several reports have highlighted their effect in preventing and/or treatment of different inflammatory diseases in animals and humans, including IBD and asthma. n-3 PUFAs can inhibit TLR4 signaling and the subsequent gene transcription of pro-inflammatory mediators (168), a process partly mediated via GPR120 (169) (Figure 3). n-3 PUFAs can also activate the anti-inflammatory transcription factor PPAR-γ and inhibit NF-κB (Figure 3) and the subsequent pro-inflammatory cytokine production including TNFα, activity which is highly expressed in the mucosa of patients with IBD and asthma subtypes (
Carbohydrates
Carbohydrates are divided into four groups: monosaccharides, disaccharides, oligosaccharides and polysaccharides. Generally, monosaccharides and disaccharides are referred to as sugar. In the western diet a large amount of calories are ingested in form of refined carbohydrates, i.e., sucrose, starch, fructose syrup, etc.—obtained from soft drinks, pastries and desserts, and white bread. This energy-dense but nutrient-poor diet is a risk factor for obesity, type 2 diabetes, cardiovascular diseases and more. Therefore, the biological plausibility exists that it has impact on intestinal inflammation and asthma. Moreover, related to the carbohydrates that can be metabolically used by gut microbes, the term “microbiota-accessible carbohydrate” has been proposed. The term refers to the ability of microbial carbohydrates to modify the composition of the microbiota, and dictate the functionality and metabolic output (180).
Fibers
Dietary fiber is a plant-based nutrient and a type of carbohydrate, which due to its biochemical structures resists digestion by intestinal and pancreatic enzymes in the human GI tract. Therefore, the fiber passes through the GI tract relatively intact. Fermentable carbohydrate substrates such as non-starch polysaccharides, resistant starch and oligosaccharides serve as important substrates for the gut microbiota. The microbes located in the human colon use fermentation to produce SCFAs, lactate and gas (181). These fermentation products selectively promote the growth of beneficial Bifidobacteria and Lactobacilli and exert anti-inflammatory (inhibition of NFκB transcription via GPR41) and anti-carcinogenic functions (182).
Short-Chain Fatty Acids
Upon fermentation of dietary fiber, bacterial metabolites such as SCFAs are produced in the colon. SCFA mediates the communication between the commensal microbiota and the immune system affecting the balance between pro- and anti-inflammatory responses. The beneficial effects of butyrate on colonic health are particularly well established (183). Microbial-derived butyrate and to a lesser extent acetate and propionate, can facilitate the generation of extrathymic Foxp3+ Tregs which are crucial for limiting intestinal inflammation (
A significant decrease in the number of butyrate-producing bacteria including Eubacterium rectale/Roseburia spp (which belong to Clostridium coccoides) and F. prausnitzii (which belong to Clostridium leptum cluster), both within the Firmicutes phylum was revealed in patients with UC and CD (190, 191). In patients with UC, colonic irrigation with butyrate is able to limit inflammation and in experimental models it ameliorates inflammation and modifies microbial composition (183, 192).
In the Canadian CHILD study the SCFA acetate was reduced in the feces of infants with atopy and wheeze (83). Feeding a high fiber diet to mice has resulted in gut microbiota alteration which concomitantly leads to increased serum SCFAs, such as acetate and propionate, and alleviates allergic asthma symptoms (Figure 3). These SCFAs induced an enhanced DC and macrophage phagocytosis and reduced Th2 responses in the murine lung (
Proteins
Proteins consist of carbon, hydrogen, oxygen, and nitrogen elements. They are essential nutrients and are involved in virtually all physiological functions. High protein intake, especially animal derived protein, is associated with an increased risk of CD (196). In asthmatics high ingestion of cured meats is linked with worsening of symptoms (
Carnitine is an amino acid derivative synthesized primarily in the liver and kidneys from lysine and methionine and is involved in lipid metabolism in eukaryotic cells (197). In humans, the main source of carnitine is red meat. Humans with an omnivorous diet following ingestion of l-carnitine, presented increased plasma trimethylamine-N-oxide (TMAO) levels, which was dependent on microbiota mechanisms, when compared to vegans or vegetarians. Elevated plasma levels of TMAO are positively correlated with an increased risk for major adverse cardiovascular events (198). However, TMAO has also protective functions, e.g., by protecting cells from osmotic and hydrostatic damage, and therefore, is essential for all organisms (
Other studies have also shown how dietary peptides and amino acids can modulate intestinal immune functions and influence inflammatory responses. Supplementation with the dipeptide alanine-glutamine, led to decreased expression of inflammatory mediators and increased expression of mucin 2 (MUC2) promoting mucosal recovery in the DSS-induced colitis mouse model (
Micronutrients
Micronutrients or trace elements are nutrients required by organisms in small quantities to maintain a variety of physiological functions and as most of them are essential, they need to be obtained from the diet. These minerals include iron, cobalt, chromium, copper, iodine, manganese, selenium (Se), zinc (Zn) and vitamins include Vitamin A (VitA), vitamin B1 (VitB1), Vitamin B6 (VitB6), Vitamin B9 (VitB9), VitB12, VitD, and VitK. Micronutrient deficiencies impair immune function and increase the severity of disease (203). Micronutrient deficiencies occur in more than half of patients with IBD, with CD patients presenting more deficiencies than UC patients, with the most common being VitB1, VitB6, VitB12, VitD, VitK, iron, folic acid, Se, and Zn (204). This deficiency in vitamins (hypovitaminosis) is thought to be the result of malabsorption, altered microbial composition and impaired host mucosal system. Low dietary intakes of VitA and VitC are associated with asthmatics (205). The next section summarizes the most relevant micronutrients in relation to IBD and asthma pathology.
Vitamins
Vitamins can be absorbed from the diet but the gut commensal microbiota play an important role in their production and bioavailability (206). Indeed, the diet of germ-free mice requires supplementation with dietary VitK and B Vitamins to maintain a normal function (207).
Vitamin A
Vitamin A is a group of unsaturated organic compounds including retinol, retinoic acid (RA), and several pro-vitamin A carotenoids including beta-carotene. They are fat-soluble substances obtained from animal food sources. RA is a metabolite of VitA, which is produced by CD103+ DCs and epithelial cells and acts as ligand for RA receptors (RARs) and Retinoic-X-Receptor (RXR), transcription factors regulating gene expression. Lymphoid cells express RAR, RXRs and RA, which are known to regulate IgA and mucosal homeostasis (Figure 3). DCs from Gut associated lymphoid tissue (GALT) produce RA to sustain gut tropism and in synergy with GALT-DC-derived IL-6 or IL-5, induce IgA production (208) (Figure 3). RA can also control the presence of RORγ+ ILCs, the formation of lymphoid tissue in the small intestine (209) and appears to be a cofactor in IgA class switch recombination (210). RA can also induce the gut-homing capacity on T cells by the up-regulation of the integrin α4β7 and the chemokine receptor CCR9 (211) (Figure 3). A diet deficient in VitA can lead to a systemic pro-inflammatory state, due to a lack of homing integrins in MLN activated T- and B-cells, which then go into systemic circulation instead of migrating back to the gut (212, 213). RA, together with TGFβ, promotes naïve CD4+ to become Foxp3+ Tregs and RA alone has also inhibitory effects on Th17 cell differentiation (Figure 3). Others have also described that VitA can impair the reprogramming of Tregs into IL-17-producing cells during intestinal inflammation (214).
Patients with IBD have been reported to be deficient in VitA (Figure 4). Cytochrome P450 26 B1 (CYP26B1) participates in the degradation of RA, and homozygous carriers of the CYP26B1 polymorphism rs2241057 have been associated as risk factor of CD development, linking an elevated catabolic function of RA to IBD (215). Supplementation of VitA/RA seems to attenuate intestinal inflammation in experimental models and even induces a shift in Th17/Tregs in UC biopsies (216–218). VitA appears to influence the microbiota, as its deficiency seems to favor a non-symptomatic reservoir of E. coli-like enteric infections (219, 220).
Vitamin D
Vitamin D belongs to a group of fat-soluble vitamins which are essential for bone mineralization and optimal intestinal absorption of calcium, iron, magnesium, phosphate, and Zn. VitD regulates the epithelial integrity/barrier function and is involved in the detoxification and protection against infection as well as in controlling of the commensal microbiota (221, 222).
Vitamin D can be obtained from the diet or by dermal synthesis, e.g., in the skin where it is produced from 7-dehydrocholesterol (222). 1,25-dihydroxyvitamin D3 [1,25(OH)2D3] is the active form, which arises from the bloodstream (endocrine action) or it can be locally produced from circulating 25(OH)D3 within intestinal cells (intracrine, autocrine and paracrine action). VitD is ubiquitously expressed in several human tissues including immune cells, but its expression is higher in intestinal epithelial cells (223). VitD deficiency has been associated with a greater disease activity and extended disease duration in patients with IBD (Figure 4) – why a supplementation of VitD is often required. Human polymorphisms in the vitamin D receptor (VDR) are also associated with susceptibility to IBD (224). Vitamin D3 has been linked to beneficial effects in asthma; however, the benefits are mainly observed in children or via maternal supplementation (225). Recent studies have identified that VitD3 appear to modify VEGF function and reduction in airway smooth muscle proliferation (226).
The biological actions of 1,25(OH)2D3 are mediated via the VDR, which acts as an heterodimer with RXR to activate VitD target genes (222, 227). VDR targeted pathways regulating inflammatory responses include TLR and NF-κB signaling, Th17/Tregs response, apoptosis, cell proliferation and differentiation, barrier function, etc. (Figure 3). The anti-inflammatory role of 1,25(OH)2D3 is based on the suppressive effect of NFκB activity, as NFκB-induced pathways are enhanced in VDR−/− mice exposed to bacterial and chemically induced colitis (228). 1,25(OH)2D3 regulates intestinal barrier trough the up-regulation of TJ proteins including occludin, ZO1, claudin 2 and E-cadherin (221, 229) (Figure 3). In support of this, IL-10−/− mice expressing the human VDR in intestinal epithelial cells resulted in a reduced development of spontaneous colitis (230). VitD has been linked to the modulation and control of the gut commensal microbial composition (Figure 3), since VDR−/− mice present an altered microbiota with more abundance on Bacteroidetes and Proteobacteria phyla and less abundance on the Firmicutes phyla (231). Interestingly, analysis of mice treated with 1,25(OH)2D3 revealed an increased C. rodentium load in the colon and spleen doubtless due to the suppression of a Th17 response, which is essential for C. rodentium clearance (232). In contrast, following infection with C. rodentium, a diet deficient in VitD aggravated barrier function, microbiota composition and inflammation (233). Correspondingly, mice fed a high-fat and VitD deficient diet presented increased ileal antimicrobial peptides and Helicobacter hepaticus and reductions in TJ proteins, MUC2 expression and abundance of beneficial bacteria such as Akkermansia muciniphila developing insulin resistance and fatty liver (234).
Other Vitamins
Vitamin B1
Vitamin B1, also known as thiamine, is mainly obtained from whole grains, trout, pork, peas and beans. It has an important role in the catabolism of sugars and amino acids (235, 236). Thiamine is a component of the pyruvate dehydrogenase that catalyzes the formation of Acetyl CoA in FA synthesis, a pathway which is altered in IBD (237). Pediatric IBD patients presented alterations in cellular transport of thiamine and FAs synthesis (e.g., bile acids) (237, 238). Altogether, these findings highlight a potential link between the microbiota, glucose, FAs and mucosal alteration leading to intestinal inflammation in which thiamine may have a key role.
Vitamin B6
Vitamin B6 is a water-soluble vitamin, also known as pyridoxine, which exists in several forms and can be obtained from fruits, vegetables, grains, fish and meat. The biologically active form of VitB6, Pyridoxal 5′-phosphate (PLP), is involved in the synthesis or metabolism of proteins, lipids and carbohydrates and important in the modulation of immune pathways (236, 239). PLP treatment ameliorated colitis in IL-10−/− mice due to a reduction in colonic TNFα, IL-6, IFNγ, COX-2 and nitric oxide synthase (iNOS) expression and modulation of the chemotactic lipid S1P (240). Eubacterium rectale, a dominant non-pathogenic fecal Gram-positive commensal bacterium has been described as one of the important bacterial group synthetizing PLP (241).
Vitamin B9
Vitamin B9 is a water-soluble vitamin also known as folic acid or folate, it can be obtained from vegetables and fruits and is important in DNA repair and methylation aiding rapid cell division and growth during, e.g., infancy and pregnancy. Bacteria linked to folate biosynthesis include Bifidobacteria and Lactobacilli groups (207, 242, 243). A deficiency in VitB9 has been more commonly ascribed to CD, especially in patients with ileal disease, than in UC patients (244, 245). VitB9 deficiency has also been associated with a reduction in colonic Foxp3+ Tregs (
Vitamin K
Vitamin K is a fat-soluble vitamin required for synthesis of certain proteins involved in blood coagulation and is linked to calcium pathways and calcification. VitK1 can be obtained from, e.g., meats, cheeses, and eggs or synthetized (VitK2) by the microbiota of the colon de novo or from VitK1 (236, 247, 248). VitK deficiency has been associated with both adult and pediatric CD patients (249). A protective role of VitK was shown in a model of DSS-induced colitis associated with a reduction in IL-6 production from B cells (250).
Minerals
Minerals are obtained from the diet, and are essential nutrients needed by organisms for synthesis of common organic molecules. Accordingly, mineral deficiencies in the westernized diet have a major impact on host health. The next section summarizes the most relevant minerals in relation to IBD and asthma pathology.
Iron
Anemia is one of the most common extra-intestinal manifestations of IBD. The deficiency, results from either an absolute state, i.e., poor dietary intake of iron, reduced iron absorption, and/or increased blood loss from chronically inflamed intestinal mucosa; and/or functional iron state, i.e., deficiency in VitB12 and insufficient availability of iron for incorporation into erythroid precursors despite normal or increased body iron stores (251, 252). It is estimated that up to 80% of patients with IBD present with anemia (253). Consequently, oral or i.v. iron supplementation is important in treatment of IBD patients. Nonetheless, caution is needed as non-absorbed iron can be toxic to intestinal epithelial cells, since it can stimulate growth and virulence of bacteria and appears to worsen disease activity in the patients (178, 254). In support of this data, rats supplemented with iron and exposed to DSS-induced colitis revealed an increased neutrophil infiltration, TNFα and IL-1 expression and NF-κB activation – all of which could be prevented by supplementing the diet with VitE (dl-alpha-tocopherol acetate) (255). In contrast, rats with humanized gut microbiota and fed dietary iron supplementation exhibited an increased abundance of Bacteroides spp. and Clostridium cluster IV, leading to an increased butyrate concentration in the gut, without the induction of colitis. Thus, iron supplementation can increase the proportion of beneficial gut microbiota metabolites which may contribute to gut health in IBD individuals (256).
Other Minerals
Selenium
Selenium is an essential antioxidant trace mineral which can be obtained from proteins or vegetables and is used in the body to synthetize the amino acid selenocysteine (selenoproteins). Large amounts of Se can cause toxicity (257). The amino acid transporters SLC3A1 and SLC1A4 have been suggested as Se transporters (236) and play a role in intestinal epithelial permeability and barrier function. Lower Se serum levels have been described in children with IBD (258). A possible therapeutic role for Se has been described, whereby macrophage derived selenoproteins enhance 15-hydroxyprostaglandine dehydrogenase (15-PGDH) and protects mice from DSS-induced colitis (259). A potential role for Se in asthma pathogenesis has been hypothesized; however, data from human studies are conflicting. A benefit of Se supplementation in animal asthma studies has been identified by regulating Th cell differentiation (260).
Zinc
Zinc is an important mineral involved in wound repair, tissue regeneration, and the immune response. Low serum Zn levels have been reported in children with IBD (258). Zn given orally to CD patients restored intestinal permeability by modulating TJ proteins in both the small intestine and colon (261). Zn concentrations have been found to be significantly lower in asthmatic patients and it is thought to result in reduced antioxidant function increasing asthma risk (262).
Conclusion and Future Perspectives
The increasing incidence of IBD and asthma implies a fundamental role for environmental factors. Several lines of evidence have identified the consumption of a diet high in saturated fat and high in sucrose increases a person’s risk for several chronic conditions including IBD and asthma (
Individuals with IBD and asthma present with a deficiency in certain essential nutrients, e.g., VitD and Iron. The reductionist approach undertaken whereby the effect of one single nutrient has been investigated in animal models, has so far provided major insights into the regulatory mechanisms associated with inflammation and metabolism. In addition, the majority of animal studies and diets, employs standard “high fat” diet containing a nutrient content designed to sustain rodent health and are, therefore, not relevant to a human and patient dietary intake (263). Studies using more complex systems, e.g., humanized mice (consisting of both a human immune system and human microbiota) fed with a humanized diet will provide a deeper mechanistic understanding of the complex diet-microbiota-host network. Integration of various approaches, e.g., genomic, transcriptomic, metabolomics or systems biology, will reveal a clearer picture of the components contributing to the pathology of these chronic inflammatory conditions. Furthermore, the impact of current therapeutic treatments and diets on disease progression and the microbiota are currently lacking, therefore, future studies addressing this question could lead to new beneficial treatment strategies.
Statements
Author contributions
DS, MA, and JM wrote the manuscript; SM wrote and edited the manuscript. All authors read and approved the final manuscript.
Acknowledgments
The APC Microbiome Institute and the authors in this publication receive financial support from Science Foundation Ireland (SFI) under Grant Number SFI/12/RC/2273. The authors would like to acknowledge SERVIER INTERNATIONAL for the Servier medical art illustrations that were used in this review. The authors want to thanks Dr. Amanda Lohan for proofreading of the manuscript.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
References
1
El-GabalawyHGuentherLCBernsteinCN. Epidemiology of immune-mediated inflammatory diseases: incidence, prevalence, natural history, and comorbidities. J Rheumatol Suppl (2010) 85:2–10.10.3899/jrheum.091461
2
MolodeckyNAISoonSRabiDMGhaliWAFerrisMChernoffGet alIncreasing incidence and prevalence of the inflammatory bowel diseases with time, based on systematic review. Gastroenterology (2012) 142:46–54.e42; quiz e30.10.1053/j.gastro.2011.10.001
3
KotlyarDSShumMHsiehJBlonskiWGreenwaldDA. Non-pulmonary allergic diseases and inflammatory bowel disease: a qualitative review. World J Gastroenterol (2014) 20:11023–32.10.3748/wjg.v20.i32.11023
4
UrangaJALopez-MirandaVLomboFAbaloR. Food, nutrients and nutraceuticals affecting the course of inflammatory bowel disease. Pharmacol Rep (2016) 68:816–26.10.1016/j.pharep.2016.05.002
5
LeiriaLOMartinsMASaadMJ. Obesity and asthma: beyond T(H)2 inflammation. Metabolism (2015) 64:172–81.10.1016/j.metabol.2014.10.002
6
ParkYSubarAFHollenbeckASchatzkinA. Dietary fiber intake and mortality in the NIH-AARP diet and health study. Arch Intern Med (2011) 171:1061–8.10.1001/archinternmed.2011.18
7
TilgHMoschenAR. Food, immunity, and the microbiome. Gastroenterology (2015) 148:1107–19.10.1053/j.gastro.2014.12.036
8
MozaffarianDHaoTRimmEBWillettWCHuFB. Changes in diet and lifestyle and long-term weight gain in women and men. N Engl J Med (2011) 364:2392–404.10.1056/NEJMoa1014296
9
ShoelsonSEHerreroLNaazA. Obesity, inflammation, and insulin resistance. Gastroenterology (2007) 132:2169–80.10.1053/j.gastro.2007.03.059
10
LeyREPetersonDAGordonJI. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell (2006) 124:837–48.10.1016/j.cell.2006.02.017
11
WoodLGGargMLGibsonPG. A high-fat challenge increases airway inflammation and impairs bronchodilator recovery in asthma. J Allergy Clin Immunol (2011) 127:1133–40.10.1016/j.jaci.2011.01.036
12
RochaDMCaldasAPOliveiraLLBressanJHermsdorffHH. Saturated fatty acids trigger TLR4-mediated inflammatory response. Atherosclerosis (2016) 244:211–5.10.1016/j.atherosclerosis.2015.11.015
13
CalderPC. Fatty acids and inflammation: the cutting edge between food and pharma. Eur J Pharmacol (2011) 668(Suppl 1):S50–8.10.1016/j.ejphar.2011.05.085
14
HallJAHartmanJSkinnerMMSchwindtARFischerKAVorachekWRet alDietary enrichment with 20% fish oil decreases mucus production and the inflammatory response in mice with ovalbumin-induced allergic lung inflammation. PLoS One (2016) 11:e0163819.10.1371/journal.pone.0163819
15
KlemensCMBermanDRMozurkewichEL. The effect of perinatal omega-3 fatty acid supplementation on inflammatory markers and allergic diseases: a systematic review. BJOG (2011) 118:916–25.10.1111/j.1471-0528.2010.02846.x
16
EngelMANeurathMF. New pathophysiological insights and modern treatment of IBD. J Gastroenterol (2010) 45:571–83.10.1007/s00535-010-0219-3
17
ThorburnANMcKenzieCIShenSStanleyDMaciaLMasonLJet alEvidence that asthma is a developmental origin disease influenced by maternal diet and bacterial metabolites. Nat Commun (2015) 6:7320.10.1038/ncomms8320
18
AlavaikkoSJaakkolaMSTjaderhaneLJaakkolaJJ. Asthma and caries: a systematic review and meta-analysis. Am J Epidemiol (2011) 174:631–41.10.1093/aje/kwr129
19
KamadaNKimYGShamHPVallanceBAPuenteJLMartensECet alRegulated virulence controls the ability of a pathogen to compete with the gut microbiota. Science (2012) 336:1325–9.10.1126/science.1222195
20
Martinez-MedinaMDenizotJDreuxNRobinFBillardEBonnetRet alWestern diet induces dysbiosis with increased E coli in CEABAC10 mice, alters host barrier function favouring AIEC colonisation. Gut (2014) 63:116–24.10.1136/gutjnl-2012-304119
21
ParkSAkinbamiLJMcGuireLCBlanckHM. Association of sugar-sweetened beverage intake frequency and asthma among U.S. adults, 2013. Prev Med (2016) 91:58–61.10.1016/j.ypmed.2016.08.004
22
LouisPScottKPDuncanSHFlintHJ. Understanding the effects of diet on bacterial metabolism in the large intestine. J Appl Microbiol (2007) 102:1197–208.10.1111/j.1365-2672.2007.03322.x
23
TrompetteAGollwitzerESYadavaKSichelstielAKSprengerNNgom-BruCet alGut microbiota metabolism of dietary fiber influences allergic airway disease and hematopoiesis. Nat Med (2014) 20:159–66.10.1038/nm.3444
24
LiZRavaMBedardADumasOGarcia-AymerichJLeynaertBet alCured meat intake is associated with worsening asthma symptoms. Thorax (2017) 72:206–12.10.1136/thoraxjnl-2016-208375
25
UfnalMZadloAOstaszewskiR. TMAO: a small molecule of great expectations. Nutrition (2015) 31:1317–23.10.1016/j.nut.2015.05.006
26
HouYCChuCCKoTLYehCLYehSL. Effects of alanyl-glutamine dipeptide on the expression of colon-inflammatory mediators during the recovery phase of colitis induced by dextran sulfate sodium. Eur J Nutr (2013) 52:1089–98.10.1007/s00394-012-0416-3
27
Garcia-LarsenVDel GiaccoSRMoreiraABoniniMCharlesDReevesTet alAsthma and dietary intake: an overview of systematic reviews. Allergy (2016) 71:433–42.10.1111/all.12800
28
KangSGWangCMatsumotoSKimCH. High and low vitamin A therapies induce distinct FoxP3+ T-cell subsets and effectively control intestinal inflammation. Gastroenterology (2009) 137:1391–402.e1391–6.10.1053/j.gastro.2009.06.063
29
AbdoJRaiVAgrawalDK. Interplay of immunity and vitamin D: interactions and implications with current IBD therapy. Curr Med Chem (2017) 24:852–67.10.2174/0929867323666161026124951
30
YukJMShinDMLeeHMYangCSJinHSKimKKet alVitamin D3 induces autophagy in human monocytes/macrophages via cathelicidin. Cell Host Microbe (2009) 6:231–43.10.1016/j.chom.2009.08.004
31
BaileyLBStoverPJMcNultyHFenechMFGregoryJFIIIMillsJLet alBiomarkers of nutrition for development-folate review. J Nutr (2015) 145:1636S–80S.10.3945/jn.114.206599
32
BlatterJBrehmJMSordilloJFornoEBoutaouiNAcosta-PerezEet alFolate deficiency, atopy, and severe asthma exacerbations in Puerto Rican children. Ann Am Thorac Soc (2016) 13:223–30.10.1513/AnnalsATS.201508-549OC
33
KinoshitaMKayamaHKusuTYamaguchiTKunisawaJKiyonoHet alDietary folic acid promotes survival of Foxp3+ regulatory T cells in the colon. J Immunol (2012) 189:2869–78.10.4049/jimmunol.1200420
34
ThuesenBHHusemoenLLOvesenLJorgensenTFengerMGildersonGet alAtopy, asthma, and lung function in relation to folate and vitamin B(12) in adults. Allergy (2010) 65:1446–54.10.1111/j.1398-9995.2010.02378.x
35
CassatJESkaarEP. Iron in infection and immunity. Cell Host Microbe (2013) 13:509–19.10.1016/j.chom.2013.04.010
36
PerlDPFogartyUHarpazNSacharDB. Bacterial-metal interactions: the potential role of aluminum and other trace elements in the etiology of Crohn’s disease. Inflamm Bowel Dis (2004) 10:881–3.10.1097/00054725-200411000-00022
37
LeesCWBarrettJCParkesMSatsangiJ. New IBD genetics: common pathways with other diseases. Gut (2011) 60(12):1739–53.10.1136/gut.2009.199679
38
ZhernakovaAvan DiemenCCWijmengaC. Detecting shared pathogenesis from the shared genetics of immune-related diseases. Nat Rev Genet (2009) 10(1):43–55.10.1038/nrg2489
39
KhorBGardetAXavierRJ. Genetics and pathogenesis of inflammatory bowel disease. Nature (2011) 474:307–17.10.1038/nature10209
40
VercelliD. Discovering susceptibility genes for asthma and allergy. Nat Rev Immunol (2008) 8(3):169–82.10.1038/nri2257
41
SullivanAHuntEMacSharryJMurphyDM. The microbiome and the pathophysiology of asthma. Respir Res (2016) 17:163.10.1186/s12931-016-0479-4
42
HuttenhowerCKosticADXavierRJ. Inflammatory bowel disease as a model for translating the microbiome. Immunity (2014) 40:843–54.10.1016/j.immuni.2014.05.013
43
MelgarSShanahanF. Inflammatory bowel disease-from mechanisms to treatment strategies. Autoimmunity (2010) 43:463–77.10.3109/08916931003674709
44
LichtensteinGRHanauerSBSandbornWJPractice Parameters Committee of American College of Gastroenterology. Management of Crohn’s disease in adults. Am J Gastroenterol (2009) 104:465–83; quiz 464, 484.10.1038/ajg.2008.168
45
NeurathMF. Current and emerging therapeutic targets for IBD. Nat Rev Gastroenterol Hepatol (2017) 14:269–78.10.1038/nrgastro.2016.208
46
OzakiECampbellMDoyleSL. Targeting the NLRP3 inflammasome in chronic inflammatory diseases: current perspectives. J Inflamm Res (2015) 8:15–27.10.2147/JIR.S51250
47
SartorRB. Microbial influences in inflammatory bowel diseases. Gastroenterology (2008) 134:577–94.10.1053/j.gastro.2007.11.059
48
PerencevichMBurakoffR. Use of antibiotics in the treatment of inflammatory bowel disease. Inflamm Bowel Dis (2006) 12:651–64.10.1097/01.MIB.0000225330.38119.c7
49
EckburgPBBikEMBernsteinCNPurdomEDethlefsenLSargentMet alDiversity of the human intestinal microbial flora. Science (2005) 308:1635–8.10.1126/science.1110591
50
SunLNavaGMStappenbeckTS. Host genetic susceptibility, dysbiosis, and viral triggers in inflammatory bowel disease. Curr Opin Gastroenterol (2011) 27:321–7.10.1097/MOG.0b013e32834661b4
51
SokolHPigneurBWatterlotLLakhdariOBermudez-HumaranLGGratadouxJJet alFaecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients. Proc Natl Acad Sci U S A (2008) 105:16731–6.10.1073/pnas.0804812105
52
Darfeuille-MichaudABoudeauJBuloisPNeutCGlasserALBarnichNet alHigh prevalence of adherent-invasive Escherichia coli associated with ileal mucosa in Crohn’s disease. Gastroenterology (2004) 127:412–21.10.1053/j.gastro.2004.04.061
53
JostinsLRipkeSWeersmaRKDuerrRHMcGovernDPHuiKYet alHost-microbe interactions have shaped the genetic architecture of inflammatory bowel disease. Nature (2012) 491:119–24.10.1038/nature11582
54
AbeKNguyenKPFineSDMoJHShenCShenoudaSet alConventional dendritic cells regulate the outcome of colonic inflammation independently of T cells. Proc Natl Acad Sci U S A (2007) 104:17022–7.10.1073/pnas.0708469104
55
ArranzADoxakiCVergadiEMartinez de la TorreYVaporidiKLagoudakiEDet alAkt1 and Akt2 protein kinases differentially contribute to macrophage polarization. Proc Natl Acad Sci U S A (2012) 109:9517–22.10.1073/pnas.1119038109
56
BerndtBEZhangMChenGHHuffnagleGBKaoJY. The role of dendritic cells in the development of acute dextran sulfate sodium colitis. J Immunol (2007) 179:6255–62.10.4049/jimmunol.179.9.6255
57
HunterMMWangAParharKSJohnstonMJVan RooijenNBeckPLet alIn vitro-derived alternatively activated macrophages reduce colonic inflammation in mice. Gastroenterology (2010) 138:1395–405.10.1053/j.gastro.2009.12.041
58
QuallsJEKaplanAMvan RooijenNCohenDA. Suppression of experimental colitis by intestinal mononuclear phagocytes. J Leukoc Biol (2006) 80:802–15.10.1189/jlb.1205734
59
QuallsJETunaHKaplanAMCohenDA. Suppression of experimental colitis in mice by CD11c+ dendritic cells. Inflamm Bowel Dis (2009) 15:236–47.10.1002/ibd.20733
60
WatanabeNIkutaKOkazakiKNakaseHTabataYMatsuuraMet alElimination of local macrophages in intestine prevents chronic colitis in interleukin-10-deficient mice. Dig Dis Sci (2003) 48:408–14.10.1023/A:1021960401290
61
CoskunM. Intestinal epithelium in inflammatory bowel disease. Front Med (2014) 1:24.10.3389/fmed.2014.00024
62
NeurathMF. Cytokines in inflammatory bowel disease. Nat Rev Immunol (2014) 14:329–42.10.1038/nri3661
63
FussIJHellerFBoirivantMLeonFYoshidaMFichtner-FeiglSet alNonclassical CD1d-restricted NK T cells that produce IL-13 characterize an atypical Th2 response in ulcerative colitis. J Clin Invest (2004) 113:1490–7.10.1172/JCI19836
64
InoueSMatsumotoTIidaMMizunoMKurokiFHoshikaKet alCharacterization of cytokine expression in the rectal mucosa of ulcerative colitis: correlation with disease activity. Am J Gastroenterol (1999) 94:2441–6.10.1111/j.1572-0241.1999.01372.x
65
MelgarSYeungMMBasAForsbergGSuhrOObergAet alOver-expression of interleukin 10 in mucosal T cells of patients with active ulcerative colitis. Clin Exp Immunol (2003) 134:127–37.10.1046/j.1365-2249.2003.02268.x
66
NunesCPereiraAMMorais-AlmeidaM. Asthma costs and social impact. Asthma Res Pract (2017) 3:1.10.1186/s40733-016-0029-3
67
MitchellPDO’ByrnePM. Biologics and the lung: TSLP and other epithelial cell-derived cytokines in asthma. Pharmacol Ther (2017) 169:104–12.10.1016/j.pharmthera.2016.06.009
68
ByrneAJMaherTMLloydCM. Pulmonary macrophages: a new therapeutic pathway in fibrosing lung disease?Trends Mol Med (2016) 22:303–16.10.1016/j.molmed.2016.02.004
69
IwasakiAFoxmanEFMolonyRD. Early local immune defences in the respiratory tract. Nat Rev Immunol (2017) 17:7–20.10.1038/nri.2016.117
70
DeckersJBranco MadeiraFHammadH. Innate immune cells in asthma. Trends Immunol (2013) 34:540–7.10.1016/j.it.2013.08.004
71
BarnesPJ. Immunology of asthma and chronic obstructive pulmonary disease. Nat Rev Immunol (2008) 8:183–92.10.1038/nri2254
72
ChangHSLeeTHJunJABaekARParkJSKooSMet alNeutrophilic inflammation in asthma: mechanisms and therapeutic considerations. Expert Rev Respir Med (2017) 11:29–40.10.1080/17476348.2017.1268919
73
BuddenKFGellatlySLWoodDLCooperMAMorrisonMHugenholtzPet alEmerging pathogenic links between microbiota and the gut-lung axis. Nat Rev Microbiol (2017) 15:55–63.10.1038/nrmicro.2016.142
74
KumarRKHerbertCFosterPS. Mouse models of acute exacerbations of allergic asthma. Respirology (2016) 21:842–9.10.1111/resp.12760
75
DebeufNHaspeslaghEvan HeldenMHammadHLambrechtBN. Mouse models of asthma. Curr Protoc Mouse Biol (2016) 6:169–84.10.1002/cpmo.4
76
OberCYaoTC. The genetics of asthma and allergic disease: a 21st century perspective. Immunol Rev (2011) 242:10–30.10.1111/j.1600-065X.2011.01029.x
77
MoheimaniFHsuACReidATWilliamsTKicicAStickSMet alThe genetic and epigenetic landscapes of the epithelium in asthma. Respir Res (2016) 17:119.10.1186/s12931-016-0434-4
78
SulovariAChenYHHudziakJJLiD. Atlas of human diseases influenced by genetic variants with extreme allele frequency differences. Hum Genet (2017) 136:39–54.10.1007/s00439-016-1734-y
79
ForsythePInmanMDBienenstockJ. Oral treatment with live Lactobacillus reuteri inhibits the allergic airway response in mice. Am J Respir Crit Care Med (2007) 175:561–9.10.1164/rccm.200606-821OC
80
MacSharryJO’MahonyCShalabyKHSheilBKarmouty-QuintanaHShanahanFet alImmunomodulatory effects of feeding with Bifidobacterium longum on allergen-induced lung inflammation in the mouse. Pulm Pharmacol Ther (2012) 25:325–34.10.1016/j.pupt.2012.05.011
81
RussellSLGoldMJReynoldsLAWillingBPDimitriuPThorsonLet alPerinatal antibiotic-induced shifts in gut microbiota have differential effects on inflammatory lung diseases. J Allergy Clin Immunol (2015) 135:100–9.10.1016/j.jaci.2014.06.027
82
WheelerMLLimonJJBarASLealCAGargusMTangJet alImmunological consequences of intestinal fungal dysbiosis. Cell Host Microbe (2016) 19:865–73.10.1016/j.chom.2016.05.003
83
ArrietaMCStiemsmaLTDimitriuPAThorsonLRussellSYurist-DoutschSet alEarly infancy microbial and metabolic alterations affect risk of childhood asthma. Sci Transl Med (2015) 7:307ra152.10.1126/scitranslmed.aab2271
84
StiemsmaLTArrietaMCDimitriuPAChengJThorsonLLefebvreDLet alShifts in Lachnospira and Clostridium sp. in the 3-month stool microbiome are associated with preschool age asthma. Clin Sci (Lond) (2016) 130:2199–207.
85
SonnenburgJLAngenentLTGordonJI. Getting a grip on things: how do communities of bacterial symbionts become established in our intestine?Nat Immunol (2004) 5:569–73.10.1038/ni1079
86
De FilippoCCavalieriDDi PaolaMRamazzottiMPoulletJBMassartSet alImpact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A (2010) 107:14691–6.10.1073/pnas.1005963107
87
GeukingMBKollerYRuppSMcCoyKD. The interplay between the gut microbiota and the immune system. Gut Microbes (2014) 5:411–8.10.4161/gmic.29330
88
CaniPDAmarJIglesiasMAPoggiMKnaufCBastelicaDet alMetabolic endotoxemia initiates obesity and insulin resistance. Diabetes (2007) 56:1761–72.10.2337/db06-1491
89
WellenKEHotamisligilGS. Inflammation, stress, and diabetes. J Clin Invest (2005) 115:1111–9.10.1172/JCI200525102
90
KitamotoSNagao-KitamotoHKuffaPKamadaN. Regulation of virulence: the rise and fall of gastrointestinal pathogens. J Gastroenterol (2016) 51:195–205.10.1007/s00535-015-1141-5
91
JandhyalaSMTalukdarRSubramanyamCVuyyuruHSasikalaMNageshwar ReddyD. Role of the normal gut microbiota. World J Gastroenterol (2015) 21:8787–803.10.3748/wjg.v21.i29.8787
92
ZhangCZhangMPangXZhaoYWangLZhaoL. Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations. ISME J (2012) 6:1848–57.10.1038/ismej.2012.27
93
DavidLAMauriceCFCarmodyRNGootenbergDBButtonJEWolfeBEet alDiet rapidly and reproducibly alters the human gut microbiome. Nature (2014) 505:559–63.10.1038/nature12820
94
WalkerAWInceJDuncanSHWebsterLMHoltropGZeXet alDominant and diet-responsive groups of bacteria within the human colonic microbiota. ISME J (2011) 5:220–30.10.1038/ismej.2010.118
95
LyonsCLKennedyEBRocheHM. Metabolic inflammation-differential modulation by dietary constituents. Nutrients (2016) 8.10.3390/nu8050247
96
HarperJWZismanTL. Interaction of obesity and inflammatory bowel disease. World J Gastroenterol (2016) 22:7868–81.10.3748/wjg.v22.i35.7868
97
BarbierMVidalHDesreumauxPDubuquoyLBourreilleAColombelJFet alOverexpression of leptin mRNA in mesenteric adipose tissue in inflammatory bowel diseases. Gastroenterol Clin Biol (2003) 27:987–91.
98
BertinBDesreumauxPDubuquoyL. Obesity, visceral fat and Crohn’s disease. Curr Opin Clin Nutr Metab Care (2010) 13:574–80.10.1097/MCO.0b013e32833cf0f4
99
DesreumauxPErnstOGeboesKGambiezLBerrebiDMuller-AloufHet alInflammatory alterations in mesenteric adipose tissue in Crohn’s disease. Gastroenterology (1999) 117:73–81.10.1016/S0016-5085(99)70552-4
100
RodriguesVSMilanskiMFagundesJJTorsoniASAyrizonoMLNunezCEet alSerum levels and mesenteric fat tissue expression of adiponectin and leptin in patients with Crohn’s disease. Clin Exp Immunol (2012) 170:358–64.10.1111/j.1365-2249.2012.04660.x
101
Peyrin-BirouletLGonzalezFDubuquoyLRousseauxCDubuquoyCDecourcelleCet alMesenteric fat as a source of C reactive protein and as a target for bacterial translocation in Crohn’s disease. Gut (2012) 61:78–85.10.1136/gutjnl-2011-300370
102
PietschJBatraAStrohTFedkeIGlaubenROkurBet alToll-like receptor expression and response to specific stimulation in adipocytes and preadipocytes: on the role of fat in inflammation. Ann N Y Acad Sci (2006) 1072:407–9.10.1196/annals.1326.021
103
SheehanALWarrenBFGearMWShepherdNA. Fat-wrapping in Crohn’s disease: pathological basis and relevance to surgical practice. Br J Surg (1992) 79:955–8.
104
BorleyNRMortensenNJJewellDPWarrenBF. The relationship between inflammatory and serosal connective tissue changes in ileal Crohn’s disease: evidence for a possible causative link. J Pathol (2000) 190:196–202.10.1002/(SICI)1096-9896(200002)190:2<196::AID-PATH513>3.0.CO;2-5
105
OlivierITheodorouVValetPCastan-LaurellIGuillouHBertrand-MichelJet alIs Crohn’s creeping fat an adipose tissue?Inflamm Bowel Dis (2011) 17(3):747–57.10.1002/ibd.21413
106
DubuquoyLRousseauxCThuruXPeyrin-BirouletLRomanoOChavattePet alPPARgamma as a new therapeutic target in inflammatory bowel diseases. Gut (2006) 55:1341–9.10.1136/gut.2006.093484
107
MansenAGuardiola-DiazHRafterJBrantingCGustafssonJA. Expression of the peroxisome proliferator-activated receptor (PPAR) in the mouse colonic mucosa. Biochem Biophys Res Commun (1996) 222:844–51.10.1006/bbrc.1996.0832
108
KimHYLeeHJChangYJPichavantMShoreSAFitzgeraldKAet alInterleukin-17-producing innate lymphoid cells and the NLRP3 inflammasome facilitate obesity-associated airway hyperreactivity. Nat Med (2014) 20:54–61.10.1038/nm.3423
109
GeversDKugathasanSDensonLAVazquez-BaezaYVan TreurenWRenBet alThe treatment-naive microbiome in new-onset Crohn’s disease. Cell Host Microbe (2014) 15:382–92.10.1016/j.chom.2014.02.005
110
HalmosEPGibsonPR. Dietary management of IBD – insights and advice. Nat Rev Gastroenterol Hepatol (2015) 12:133–46.10.1038/nrgastro.2015.11
111
ShivashankarRLewisJD. The role of diet in inflammatory bowel disease. Curr Gastroenterol Rep (2017) 19:22.10.1007/s11894-017-0563-z
112
WillemsenLE. Dietary n-3 long chain polyunsaturated fatty acids in allergy prevention and asthma treatment. Eur J Pharmacol (2016) 785:174–86.10.1016/j.ejphar.2016.03.062
113
ChanSSLubenROlsenATjonnelandAKaaksRTeucherBet alBody mass index and the risk for Crohn’s disease and ulcerative colitis: data from a European Prospective Cohort Study (The IBD in EPIC study). Am J Gastroenterol (2013) 108:575–82.10.1038/ajg.2012.453
114
de SilvaPSLubenRShresthaSSKhawKTHartAR. Dietary arachidonic and oleic acid intake in ulcerative colitis etiology: a prospective cohort study using 7-day food diaries. Eur J Gastroenterol Hepatol (2014) 26:11–8.10.1097/MEG.0b013e328365c372
115
WieseDMHorstSNBrownCTAllamanMMHodgesMESlaughterJCet alSerum fatty acids are correlated with inflammatory cytokines in ulcerative colitis. PLoS One (2016) 11:e0156387.10.1371/journal.pone.0156387
116
FerreiraPCravoMGuerreiroCSTavaresLSantosPMBritoM. Fat intake interacts with polymorphisms of Caspase9, FasLigand and PPARgamma apoptotic genes in modulating Crohn’s disease activity. Clin Nutr (2010) 29:819–23.10.1016/j.clnu.2010.06.008
117
NagelGLinseisenJ. Dietary intake of fatty acids, antioxidants and selected food groups and asthma in adults. Eur J Clin Nutr (2005) 59:8–15.10.1038/sj.ejcn.1602025
118
WijgaAHSmitHAKerkhofMde JongsteJCGerritsenJNeijensHJet alAssociation of consumption of products containing milk fat with reduced asthma risk in pre-school children: the PIAMA birth cohort study. Thorax (2003) 58:567–72.10.1136/thorax.58.7.567
119
YangZHMiyaharaHTakeoJKatayamaM. Diet high in fat and sucrose induces rapid onset of obesity-related metabolic syndrome partly through rapid response of genes involved in lipogenesis, insulin signalling and inflammation in mice. Diabetol Metab Syndr (2012) 4:32.10.1186/1758-5996-4-32
120
MillerBFerversFRohbeckRStrohmeyerG. [Sugar consumption in patients with Crohn’s disease]. Verh Dtsch Ges Inn Med (1976) 82(Pt 1):922–4.
121
RacineACarbonnelFChanSSHartARBueno-de-MesquitaHBOldenburgBet alDietary patterns and risk of inflammatory bowel disease in Europe: results from the EPIC study. Inflamm Bowel Dis (2016) 22:345–54.10.1097/MIB.0000000000000638
122
BerentzenNEvan StokkomVLGehringUKoppelmanGHSchaapLASmitHAet alAssociations of sugar-containing beverages with asthma prevalence in 11-year-old children: the PIAMA birth cohort. Eur J Clin Nutr (2015) 69:303–8.10.1038/ejcn.2014.153
123
AgusADenizotJThevenotJMartinez-MedinaMMassierSSauvanetPet alWestern diet induces a shift in microbiota composition enhancing susceptibility to adherent-invasive E. coli infection and intestinal inflammation. Sci Rep (2016) 6:19032.10.1038/srep19032
124
ShodaRMatsuedaKYamatoSUmedaN. Epidemiologic analysis of Crohn disease in Japan: increased dietary intake of n-6 polyunsaturated fatty acids and animal protein relates to the increased incidence of Crohn disease in Japan. Am J Clin Nutr (1996) 63:741–5.
125
MaconiGArdizzoneSCucinoCBezzioCRussoAGBianchi PorroG. Pre-illness changes in dietary habits and diet as a risk factor for inflammatory bowel disease: a case-control study. World J Gastroenterol (2010) 16:4297–304.10.3748/wjg.v16.i34.4297
126
DevkotaSWangYMuschMWLeoneVFehlner-PeachHNadimpalliAet alDietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice. Nature (2012) 487:104–8.10.1038/nature11225
127
WrightRTrueloveSC. A controlled therapeutic trial of various diets in ulcerative colitis. Br Med J (1965) 2:138–41.10.1136/bmj.2.4724.138
128
CampbellBELodgeCJLoweAJBurgessJAMathesonMCDharmageSC. Exposure to ’farming’ and objective markers of atopy: a systematic review and meta-analysis. Clin Exp Allergy (2015) 45:744–57.10.1111/cea.12429
129
HouseJSWyssABHoppinJARichardsMLongSUmbachDMet alEarly-life farm exposures and adult asthma and atopy in the Agricultural Lung Health Study. J Allergy Clin Immunol (2017) 140(1):249–56.e214.10.1016/j.jaci.2016.09.036
130
SozanskaBPearceNDudekKCullinanP. Consumption of unpasteurized milk and its effects on atopy and asthma in children and adult inhabitants in rural Poland. Allergy (2013) 68:644–50.10.1111/all.12147
131
RobertsCLRushworthSLRichmanERhodesJM. Hypothesis: increased consumption of emulsifiers as an explanation for the rising incidence of Crohn’s disease. J Crohns Colitis (2013) 7:338–41.10.1016/j.crohns.2013.01.004
132
ChassaingBKorenOGoodrichJKPooleACSrinivasanSLeyREet alDietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. Nature (2015) 519:92–6.10.1038/nature14232
133
RobertsCLKeitaAVDuncanSHO’KennedyNSoderholmJDRhodesJMet alTranslocation of Crohn’s disease Escherichia coli across M-cells: contrasting effects of soluble plant fibres and emulsifiers. Gut (2010) 59:1331–9.10.1136/gut.2009.195370
134
ChassaingBVan de WieleTDe BodtJMarzoratiMGewirtzAT. Dietary emulsifiers directly alter human microbiota composition and gene expression ex vivo potentiating intestinal inflammation. Gut (2017).10.1136/gutjnl-2016-313099
135
HouJKLeeDLewisJ. Diet and inflammatory bowel disease: review of patient-targeted recommendations. Clin Gastroenterol Hepatol (2014) 12:1592–600.10.1016/j.cgh.2013.09.063
136
ChanSSLubenRvan SchaikFOldenburgBBueno-de-MesquitaHBHallmansGet alCarbohydrate intake in the etiology of Crohn’s disease and ulcerative colitis. Inflamm Bowel Dis (2014) 20:2013–21.10.1097/MIB.0000000000000168
137
LucendoAJDe RezendeLC. Importance of nutrition in inflammatory bowel disease. World J Gastroenterol (2009) 15:2081–8.10.3748/wjg.15.2081
138
AnanthakrishnanANKhaliliHKonijetiGGHiguchiLMde SilvaPKorzenikJRet alA prospective study of long-term intake of dietary fiber and risk of Crohn’s disease and ulcerative colitis. Gastroenterology (2013) 145:970–7.10.1053/j.gastro.2013.07.050
139
MonteleoneIPalloneFMonteleoneG. Aryl hydrocarbon receptor and colitis. Semin Immunopathol (2013) 35:671–5.10.1007/s00281-013-0396-2
140
LiYInnocentinSWithersDRRobertsNAGallagherARGrigorievaEFet alExogenous stimuli maintain intraepithelial lymphocytes via aryl hydrocarbon receptor activation. Cell (2011) 147:629–40.10.1016/j.cell.2011.09.025
141
MonteleoneIRizzoASarraMSicaGSileriPBianconeLet alAryl hydrocarbon receptor-induced signals up-regulate IL-22 production and inhibit inflammation in the gastrointestinal tract. Gastroenterology (2011) 141:237–248, 248.e231.10.1053/j.gastro.2011.04.007
142
QiuYPengKLiuMXiaoWYangH. CD8alphaalpha TCRalphabeta intraepithelial lymphocytes in the mouse gut. Dig Dis Sci (2016) 61:1451–60.10.1007/s10620-015-4016-y
143
LeibeltSFriedeMERoheCGutleDRutkowskiEWeigertAet alDedicated immunosensing of the mouse intestinal epithelium facilitated by a pair of genetically coupled lectin-like receptors. Mucosal Immunol (2015) 8:232–42.10.1038/mi.2014.60
144
SchmitzFKooy-WinkelaarYWiekmeijerASBrugmanMHMearinMLMulderCet alThe composition and differentiation potential of the duodenal intraepithelial innate lymphocyte compartment is altered in coeliac disease. Gut (2016) 65:1269–78.10.1136/gutjnl-2014-308153
145
GrimstadTBergeRKBohovPSkorveJGoranssonLOmdalRet alSalmon diet in patients with active ulcerative colitis reduced the simple clinical colitis activity index and increased the anti-inflammatory fatty acid index – a pilot study. Scand J Clin Lab Invest (2011) 71:68–73.10.3109/00365513.2010.542484
146
YangHXunPHeK. Fish and fish oil intake in relation to risk of asthma: a systematic review and meta-analysis. PLoS One (2013) 8:e80048.10.1371/journal.pone.0080048
147
VanniceGRasmussenH. Position of the academy of nutrition and dietetics: dietary fatty acids for healthy adults. J Acad Nutr Diet114(1):136–53.10.1016/j.jand.2013.11.001
148
HuangSRutkowskyJMSnodgrassRGOno-MooreKDSchneiderDANewmanJWet alSaturated fatty acids activate TLR-mediated proinflammatory signaling pathways. J Lipid Res (2012) 53:2002–13.10.1194/jlr.D029546
149
YangXHaghiacMGlazebrookPMiniumJCatalanoPMHauguel-de MouzonS. Saturated fatty acids enhance TLR4 immune pathways in human trophoblasts. Hum Reprod (2015) 30:2152–9.10.1093/humrep/dev173
150
LeeJYYeJGaoZYounHSLeeWHZhaoLet alReciprocal modulation of toll-like receptor-4 signaling pathways involving MyD88 and phosphatidylinositol 3-kinase/AKT by saturated and polyunsaturated fatty acids. J Biol Chem (2003) 278:37041–51.10.1074/jbc.M305213200
151
MoreiraAPTexeiraTFFerreiraABPeluzio MdoCAlfenas RdeC. Influence of a high-fat diet on gut microbiota, intestinal permeability and metabolic endotoxaemia. Br J Nutr (2012) 108:801–9.10.1017/S0007114512001213
152
FernandezMLWestKL. Mechanisms by which dietary fatty acids modulate plasma lipids. J Nutr (2005) 135:2075–8.
153
StewartCRStuartLMWilkinsonKvan GilsJMDengJHalleAet alCD36 ligands promote sterile inflammation through assembly of a toll-like receptor 4 and 6 heterodimer. Nat Immunol (2010) 11:155–61.10.1038/ni.1836
154
GruberLKislingSLichtiPMartinFPMaySKlingensporMet alHigh fat diet accelerates pathogenesis of murine Crohn’s disease-like ileitis independently of obesity. PLoS One (2013) 8:e71661.10.1371/journal.pone.0071661
155
PaikJFierceYTreutingPMBrabbTMaggio-PriceL. High-fat diet-induced obesity exacerbates inflammatory bowel disease in genetically susceptible Mdr1a-/- male mice. J Nutr (2013) 143:1240–7.10.3945/jn.113.174615
156
ReddyKVNaiduKA. Oleic acid, hydroxytyrosol and n-3 fatty acids collectively modulate colitis through reduction of oxidative stress and IL-8 synthesis; in vitro and in vivo studies. Int Immunopharmacol (2016) 35:29–42.10.1016/j.intimp.2016.03.019
157
JenkinsDJChiavaroliLWongJMKendallCLewisGFVidgenEet alAdding monounsaturated fatty acids to a dietary portfolio of cholesterol-lowering foods in hypercholesterolemia. CMAJ (2010) 182:1961–7.10.1503/cmaj.092128
158
ChanKLPillonNJSivaloganathanDMCostfordSRLiuZTheretMet alPalmitoleate reverses high fat-induced proinflammatory macrophage polarization via AMP-activated protein kinase (AMPK). J Biol Chem (2015) 290:16979–88.10.1074/jbc.M115.646992
159
SawaiTDrongowskiRALampmanRWCoranAGHarmonCM. The effect of phospholipids and fatty acids on tight-junction permeability and bacterial translocation. Pediatr Surg Int (2001) 17:269–74.10.1007/s003830100592
160
EmmanouilEManiosYGrammatikakiEKondakiKOikonomouEPapadopoulosNet alAssociation of nutrient intake and wheeze or asthma in a Greek pre-school population. Pediatr Allergy Immunol (2010) 21:90–5.10.1111/j.1399-3038.2009.00876.x
161
DeCoffeDQuinCGillSKTasnimNBrownKGodovannyiAet alDietary lipid type, rather than total number of calories, alters outcomes of enteric infection in mice. J Infect Dis (2016) 213:1846–56.10.1093/infdis/jiw084
162
EstakiMDeCoffeDGibsonDL. Interplay between intestinal alkaline phosphatase, diet, gut microbes and immunity. World J Gastroenterol (2014) 20:15650–6.10.3748/wjg.v20.i42.15650
163
Sanchez-FidalgoSCardenoASanchez-HidalgoMAparicio-SotoMVillegasIRosilloMAet alDietary unsaponifiable fraction from extra virgin olive oil supplementation attenuates acute ulcerative colitis in mice. Eur J Pharm Sci (2013) 48:572–81.10.1016/j.ejps.2012.12.004
164
CardenoAMagnussonMKStridHAlarcon de La LastraCSanchez-HidalgoMOhmanL. The unsaponifiable fraction of extra virgin olive oil promotes apoptosis and attenuates activation and homing properties of T cells from patients with inflammatory bowel disease. Food Chem (2014) 161:353–60.10.1016/j.foodchem.2014.04.016
165
ChapkinRSKimWLuptonJRMcMurrayDN. Dietary docosahexaenoic and eicosapentaenoic acid: emerging mediators of inflammation. Prostaglandins Leukot Essent Fatty Acids (2009) 81:187–91.10.1016/j.plefa.2009.05.010
166
SchmitzGEckerJ. The opposing effects of n-3 and n-6 fatty acids. Prog Lipid Res (2008) 47:147–55.10.1016/j.plipres.2007.12.004
167
StensonWF. The universe of arachidonic acid metabolites in inflammatory bowel disease: can we tell the good from the bad?Curr Opin Gastroenterol (2014) 30:347–51.10.1097/MOG.0000000000000075
168
LeeJYPlakidasALeeWHHeikkinenAChanmugamPBrayGet alDifferential modulation of toll-like receptors by fatty acids: preferential inhibition by n-3 polyunsaturated fatty acids. J Lipid Res (2003) 44:479–86.10.1194/jlr.M200361-JLR200
169
OhDYTalukdarSBaeEJImamuraTMorinagaHFanWet alGPR120 is an omega-3 fatty acid receptor mediating potent anti-inflammatory and insulin-sensitizing effects. Cell (2010) 142:687–98.10.1016/j.cell.2010.07.041
170
BarbalhoSMGoulart RdeAQuesadaKBecharaMDde Carvalho AdeC. Inflammatory bowel disease: can omega-3 fatty acids really help?Ann Gastroenterol (2016) 29:37–43.
171
TabbaaMGolubicMRoizenMFBernsteinAM. Docosahexaenoic acid, inflammation, and bacterial dysbiosis in relation to periodontal disease, inflammatory bowel disease, and the metabolic syndrome. Nutrients (2013) 5:3299–310.10.3390/nu5083299
172
LiuYChenFOdleJLinXJacobiSKZhuHet alFish oil enhances intestinal integrity and inhibits TLR4 and NOD2 signaling pathways in weaned pigs after LPS challenge. J Nutr (2012) 142:2017–24.10.3945/jn.112.164947
173
EmelyanovAFedoseevGKrasnoschekovaOAbulimityATrendelevaTBarnesPJ. Treatment of asthma with lipid extract of New Zealand green-lipped mussel: a randomised clinical trial. Eur Respir J (2002) 20:596–600.10.1183/09031936.02.02632001
174
MickleboroughTDLindleyMRIonescuAAFlyAD. Protective effect of fish oil supplementation on exercise-induced bronchoconstriction in asthma. Chest (2006) 129:39–49.10.1378/chest.129.1.39
175
HardyMSKekicAGraybillNLLancasterZR. A systematic review of the association between fish oil supplementation and the development of asthma exacerbations. SAGE Open Med (2016) 4:2050312116666216.10.1177/2050312116666216
176
BlasbalgTLHibbelnJRRamsdenCEMajchrzakSFRawlingsRR. Changes in consumption of omega-3 and omega-6 fatty acids in the United States during the 20th century. Am J Clin Nutr (2011) 93:950–62.10.3945/ajcn.110.006643
177
SimopoulosAP. The importance of the omega-6/omega-3 fatty acid ratio in cardiovascular disease and other chronic diseases. Exp Biol Med (Maywood) (2008) 233:674–88.10.3181/0711-MR-311
178
PearlDSMasoodiMEidenMBrummerJGullickDMcKeeverTMet alAltered colonic mucosal availability of n-3 and n-6 polyunsaturated fatty acids in ulcerative colitis and the relationship to disease activity. J Crohns Colitis (2014) 8:70–9.10.1016/j.crohns.2013.03.013
179
KompauerIDemmelmairHKoletzkoBBolteGLinseisenJHeinrichJ. n6/n3 hypothesis and allergies: biologically plausible, but not confirmed. Eur J Med Res (2004) 9:378–82.
180
SonnenburgEDSonnenburgJL. Starving our microbial self: the deleterious consequences of a diet deficient in microbiota-accessible carbohydrates. Cell Metab (2014) 20:779–86.10.1016/j.cmet.2014.07.003
181
CummingsJHMacfarlaneGT. Role of intestinal bacteria in nutrient metabolism. JPEN J Parenter Enteral Nutr (1997) 21:357–65.10.1177/0148607197021006357
182
MaslowskiKMMackayCR. Diet, gut microbiota and immune responses. Nat Immunol (2011) 12:5–9.10.1038/ni0111-5
183
HamerHMJonkersDVenemaKVanhoutvinSTroostFJBrummerRJ. Review article: the role of butyrate on colonic function. Aliment Pharmacol Ther (2008) 27:104–19.10.1111/j.1365-2036.2007.03562.x
184
ArpaiaNCampbellCFanXDikiySvan der VeekenJdeRoosPet alMetabolites produced by commensal bacteria promote peripheral regulatory T-cell generation. Nature (2013) 504:451–5.10.1038/nature12726
185
JosefowiczSZNiecREKimHYTreutingPChinenTZhengYet alExtrathymically generated regulatory T cells control mucosal TH2 inflammation. Nature (2012) 482:395–9.10.1038/nature10772
186
MillardALMertesPMItteletDVillardFJeannessonPBernardJ. Butyrate affects differentiation, maturation and function of human monocyte-derived dendritic cells and macrophages. Clin Exp Immunol (2002) 130:245–55.10.1046/j.0009-9104.2002.01977.x
187
WangBMorinobuAHoriuchiMLiuJKumagaiS. Butyrate inhibits functional differentiation of human monocyte-derived dendritic cells. Cell Immunol (2008) 253:54–8.10.1016/j.cellimm.2008.04.016
188
KohADe VadderFKovatcheva-DatcharyPBackhedF. From dietary fiber to host physiology: short-chain fatty acids as key bacterial metabolites. Cell (2016) 165:1332–45.10.1016/j.cell.2016.05.041
189
AnneseVRogaiFSettesoldiABagnoliS. PPARgamma in inflammatory bowel disease. PPAR Res (2012) 2012:620839.10.1155/2012/620839
190
FrankDNSt AmandALFeldmanRABoedekerECHarpazNPaceNR. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases. Proc Natl Acad Sci U S A (2007) 104:13780–5.10.1073/pnas.0706625104
191
MachielsKJoossensMSabinoJDe PreterVArijsIEeckhautVet alA decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis. Gut (2014) 63:1275–83.10.1136/gutjnl-2013-304833
192
ZhangTDingCZhaoMDaiXYangJLiYet alSodium butyrate reduces colitogenic immunoglobulin A-coated bacteria and modifies the composition of microbiota in IL-10 deficient mice. Nutrients (2016) 8.10.3390/nu8120728
193
GollwitzerESSaglaniSTrompetteAYadavaKSherburnRMcCoyKDet alLung microbiota promotes tolerance to allergens in neonates via PD-L1. Nat Med (2014) 20:642–7.10.1038/nm.3568
194
HalnesIBainesKJBerthonBSMacDonald-WicksLKGibsonPGWoodLG. Soluble fibre meal challenge reduces airway inflammation and expression of GPR43 and GPR41 in asthma. Nutrients (2017) 9(1).10.3390/nu9010057
195
ZhangZShiLPangWLiuWLiJWangHet alDietary fiber intake regulates intestinal microflora and inhibits ovalbumin-induced allergic airway inflammation in a mouse model. PLoS One (2016) 11:e0147778.10.1371/journal.pone.0147778
196
JantchouPMoroisSClavel-ChapelonFBoutron-RuaultMCCarbonnelF. Animal protein intake and risk of inflammatory bowel disease: the E3N prospective study. Am J Gastroenterol (2010) 105:2195–201.10.1038/ajg.2010.192
197
BremerJ. Carnitine – metabolism and functions. Physiol Rev (1983) 63:1420–80.
198
KoethRAWangZLevisonBSBuffaJAOrgESheehyBTet alIntestinal microbiota metabolism of l-carnitine, a nutrient in red meat, promotes atherosclerosis. Nat Med (2013) 19:576–85.10.1038/nm.3145
199
WilsonATeftWAMorseBLChoiYHWoolseySDeGorterMKet alTrimethylamine-N-oxide: a novel biomarker for the identification of inflammatory bowel disease. Dig Dis Sci (2015) 60:3620–30.10.1007/s10620-015-3797-3
200
HodgeLSalomeCMPeatJKHabyMMXuanWWoolcockAJ. Consumption of oily fish and childhood asthma risk. Med J Aust (1996) 164:137–40.
201
GuptaNKThakerAIKanuriNRiehlTERowleyCWStensonWFet alSerum analysis of tryptophan catabolism pathway: correlation with Crohn’s disease activity. Inflamm Bowel Dis (2012) 18:1214–20.10.1002/ibd.21849
202
KimCJKovacs-NolanJAYangCArchboldTFanMZMineY. l-Tryptophan exhibits therapeutic function in a porcine model of dextran sodium sulfate (DSS)-induced colitis. J Nutr Biochem (2010) 21:468–75.10.1016/j.jnutbio.2009.01.019
203
ThurnhamDI. Micronutrients and immune function: some recent developments. J Clin Pathol (1997) 50:887–91.10.1136/jcp.50.11.887
204
WeisshofRChermeshI. Micronutrient deficiencies in inflammatory bowel disease. Curr Opin Clin Nutr Metab Care (2015) 18:576–81.10.1097/MCO.0000000000000226
205
AllenSBrittonJRLeonardi-BeeJA. Association between antioxidant vitamins and asthma outcome measures: systematic review and meta-analysis. Thorax (2009) 64:610–9.10.1136/thx.2008.101469
206
BurkholderPRMcVeighI. Synthesis of vitamins by intestinal bacteria. Proc Natl Acad Sci U S A (1942) 28:285–9.10.1073/pnas.28.7.285
207
RossiMAmarettiARaimondiS. Folate production by probiotic bacteria. Nutrients (2011) 3:118–34.10.3390/nu3010118
208
MoraJRIwataMEksteenBSongSYJuntTSenmanBet alGeneration of gut-homing IgA-secreting B cells by intestinal dendritic cells. Science (2006) 314:1157–60.10.1126/science.1132742
209
GoverseGLabao-AlmeidaCFerreiraMMolenaarRWahlenSKonijnTet alVitamin A controls the presence of RORgamma+ innate lymphoid cells and lymphoid tissue in the small intestine. J Immunol (2016) 196:5148–55.10.4049/jimmunol.1501106
210
SeoGYJangYSKimHALeeMRParkMHParkSRet alRetinoic acid, acting as a highly specific IgA isotype switch factor, cooperates with TGF-beta1 to enhance the overall IgA response. J Leukoc Biol (2013) 94:325–35.10.1189/jlb.0313128
211
IwataMHirakiyamaAEshimaYKagechikaHKatoCSongSY. Retinoic acid imprints gut-homing specificity on T cells. Immunity (2004) 21:527–38.10.1016/j.immuni.2004.08.011
212
RuiterBPatilSUShrefflerWG. Vitamins A and D have antagonistic effects on expression of effector cytokines and gut-homing integrin in human innate lymphoid cells. Clin Exp Allergy (2015) 45:1214–25.10.1111/cea.12568
213
SirisinhaS. The pleiotropic role of vitamin A in regulating mucosal immunity. Asian Pac J Allergy Immunol (2015) 33:71–89.
214
TejonGManriquezVDe CalistoJFlores-SantibanezFHidalgoYCrisostomoNet alVitamin A impairs the reprogramming of Tregs into IL-17-producing cells during intestinal inflammation. Biomed Res Int (2015) 2015:137893.10.1155/2015/137893
215
FransenKFranzenPMagnusonAElmabsoutAANyhlinNWickbomAet alPolymorphism in the retinoic acid metabolizing enzyme CYP26B1 and the development of Crohn’s disease. PLoS One (2013) 8:e72739.10.1371/journal.pone.0072739
216
BaiALuNGuoYLiuZChenJPengZ. All-trans retinoic acid down-regulates inflammatory responses by shifting the Treg/Th17 profile in human ulcerative and murine colitis. J Leukoc Biol (2009) 86:959–69.10.1189/jlb.0109006
217
ConwayTFHammerLFurtadoSMathiowitzENicolettiFManganoKet alOral delivery of particulate transforming growth factor beta 1 and all-trans retinoic acid reduces gut inflammation in murine models of inflammatory bowel disease. J Crohns Colitis (2015) 9:647–58.10.1093/ecco-jcc/jjv089
218
PennyHLPrestwoodTRBhattacharyaNSunFKenkelJADavidsonMGet alRestoring retinoic acid attenuates intestinal inflammation and tumorigenesis in APCMin/+ mice. Cancer Immunol Res (2016) 4:917–26.10.1158/2326-6066.CIR-15-0038
219
McDanielKLRestoriKHDoddsJWKennettMJRossACCantornaMT. Vitamin A-deficient hosts become nonsymptomatic reservoirs of Escherichia coli-like enteric infections. Infect Immun (2015) 83:2984–91.10.1128/IAI.00201-15
220
RuaneDChornyALeeHFaithJPandeyGShanMet alMicrobiota regulate the ability of lung dendritic cells to induce IgA class-switch recombination and generate protective gastrointestinal immune responses. J Exp Med (2016) 213:53–73.10.1084/jem.20150567
221
BarbachanoAFernandez-BarralAFerrer-MayorgaGCostales-CarreraALarribaMJMunozA. The endocrine vitamin D system in the gut. Mol Cell Endocrinol (2016).10.1016/j.mce.2016.11.028
222
ChristakosSDhawanPVerstuyfAVerlindenLCarmelietG. Vitamin D: metabolism, molecular mechanism of action, and pleiotropic effects. Physiol Rev (2016) 96:365–408.10.1152/physrev.00014.2015
223
YamamotoTNakahigashiMSaniabadiAR. Review article: diet and inflammatory bowel disease–epidemiology and treatment. Aliment Pharmacol Ther (2009) 30(2):99–112.
224
SimmonsJDMullighanCWelshKIJewellDP. Vitamin D receptor gene polymorphism: association with Crohn’s disease susceptibility. Gut (2000) 47:211–4.10.1136/gut.47.2.211
225
NurmatovUDevereuxGSheikhA. Nutrients and foods for the primary prevention of asthma and allergy: systematic review and meta-analysis. J Allergy Clin Immunol (2011) 127:724–33.e721–30.10.1016/j.jaci.2010.11.001
226
KimSHPeiQMJiangPYangMQianXJLiuJB. Effect of active vitamin D3 on VEGF-induced ADAM33 expression and proliferation in human airway smooth muscle cells: implications for asthma treatment. Respir Res (2017) 18:7.10.1186/s12931-016-0490-9
227
MargolisRNChristakosS. The nuclear receptor superfamily of steroid hormones and vitamin D gene regulation. An update. Ann N Y Acad Sci (2010) 1192:208–14.10.1111/j.1749-6632.2009.05227.x
228
LiuWChenYGolanMAAnnunziataMLDuJDoughertyUet alIntestinal epithelial vitamin D receptor signaling inhibits experimental colitis. J Clin Invest (2013) 123:3983–96.10.1172/JCI65842
229
Ordonez-MoranPLarribaMJPalmerHGValeroRABarbachanoADunachMet alRhoA-ROCK and p38MAPK-MSK1 mediate vitamin D effects on gene expression, phenotype, and Wnt pathway in colon cancer cells. J Cell Biol (2008) 183:697–710.10.1083/jcb.200803020
230
GolanMALiuWShiYChenLWangJLiuTet alTransgenic expression of vitamin D receptor in gut epithelial cells ameliorates spontaneous colitis caused by interleukin-10 deficiency. Dig Dis Sci (2015) 60:1941–7.10.1007/s10620-015-3634-8
231
OoiJHLiYRogersCJCantornaMT. Vitamin D regulates the gut microbiome and protects mice from dextran sodium sulfate-induced colitis. J Nutr (2013) 143:1679–86.10.3945/jn.113.180794
232
RyzNRPattersonSJZhangYMaCHuangTBhinderGet alActive vitamin D (1,25-dihydroxyvitamin D3) increases host susceptibility to Citrobacter rodentium by suppressing mucosal Th17 responses. Am J Physiol Gastrointest Liver Physiol (2012) 303:G1299–311.10.1152/ajpgi.00320.2012
233
AssaAVongLPinnellLJRautavaJAvitzurNJohnson-HenryKCet alVitamin D deficiency predisposes to adherent-invasive Escherichia coli-induced barrier dysfunction and experimental colonic injury. Inflamm Bowel Dis (2015) 21:297–306.10.1097/MIB.0000000000000282
234
SuDNieYZhuAChenZWuPZhangLet alVitamin D signaling through induction of Paneth cell defensins maintains gut microbiota and improves metabolic disorders and hepatic steatosis in animal models. Front Physiol (2016) 7:498.10.3389/fphys.2016.00498
235
HoffmanR. Thiamine deficiency in the Western diet and dementia risk. Br J Nutr (2016) 116:188–9.10.1017/S000711451600177X
236
KielaPRGhishanFK. Physiology of intestinal absorption and secretion. Best Pract Res Clin Gastroenterol (2016) 30:145–59.10.1016/j.bpg.2016.02.007
237
KnechtCFretterCRosenstielPKrawczakMHuttMT. Distinct metabolic network states manifest in the gene expression profiles of pediatric inflammatory bowel disease patients and controls. Sci Rep (2016) 6:32584.10.1038/srep32584
238
QuinceCIjazUZLomanNErenAMSaulnierDRussellJet alExtensive modulation of the fecal metagenome in Children with Crohn’s disease during exclusive enteral nutrition. Am J Gastroenterol (2015) 110:1718–29; quiz 1730.10.1038/ajg.2015.357
239
MooneySLeuendorfJEHendricksonCHellmannH. Vitamin B6: a long known compound of surprising complexity. Molecules (2009) 14:329–51.10.3390/molecules14010329
240
SelhubJByunALiuZMasonJBBronsonRTCrottJW. Dietary vitamin B6 intake modulates colonic inflammation in the IL10-/- model of inflammatory bowel disease. J Nutr Biochem (2013) 24:2138–43.10.1016/j.jnutbio.2013.08.005
241
FleischmanNMDasDKumarAXuQChiuHJJaroszewskiLet alMolecular characterization of novel pyridoxal-5’-phosphate-dependent enzymes from the human microbiome. Protein Sci (2014) 23:1060–76.10.1002/pro.2493
242
D’AimmoMRMattarelliPBiavatiBCarlssonNGAndlidT. The potential of bifidobacteria as a source of natural folate. J Appl Microbiol (2012) 112:975–84.10.1111/j.1365-2672.2012.05261.x
243
de Crecy-LagardV. Identification of genes encoding tRNA modification enzymes by comparative genomics. Methods Enzymol (2007) 425:153–83.10.1016/S0076-6879(07)25007-4
244
BattatRKopylovUSzilagyiASaxenaARosenblattDSWarnerMet alVitamin B12 deficiency in inflammatory bowel disease: prevalence, risk factors, evaluation, and management. Inflamm Bowel Dis (2014) 20:1120–8.10.1097/MIB.0000000000000024
245
YakutMUstunYKabacamGSoykanI. Serum vitamin B12 and folate status in patients with inflammatory bowel diseases. Eur J Intern Med (2010) 21:320–3.10.1016/j.ejim.2010.05.007
246
WangTZhangHPZhangXLiangZAJiYLWangG. Is folate status a risk factor for asthma or other allergic diseases?Allergy Asthma Immunol Res (2015) 7:538–46.10.4168/aair.2015.7.6.538
247
BeulensJWBoothSLvan den HeuvelEGStoecklinEBakaAVermeerC. The role of menaquinones (vitamin K(2)) in human health. Br J Nutr (2013) 110:1357–68.10.1017/S0007114513001013
248
HillMJ. Intestinal flora and endogenous vitamin synthesis. Eur J Cancer Prev (1997) 6(Suppl 1):S43–5.10.1097/00008469-199703001-00009
249
NowakJKGrzybowska-ChlebowczykULandowskiPSzaflarska-PoplawskaAKlincewiczBAdamczakDet alPrevalence and correlates of vitamin K deficiency in children with inflammatory bowel disease. Sci Rep (2014) 4:4768.10.1038/srep04768
250
ShiraishiEIijimaHShinzakiSNakajimaSInoueTHiyamaSet alVitamin K deficiency leads to exacerbation of murine dextran sulfate sodium-induced colitis. J Gastroenterol (2016) 51:346–56.10.1007/s00535-015-1112-x
251
KaithaSBashirMAliT. Iron deficiency anemia in inflammatory bowel disease. World J Gastrointest Pathophysiol (2015) 6:62–72.10.4291/wjgp.v6.i3.62
252
KulniggSGascheC. Systematic review: managing anaemia in Crohn’s disease. Aliment Pharmacol Ther (2006) 24:1507–23.10.1111/j.1365-2036.2006.03146.x
253
SteinJDignassAU. Management of iron deficiency anemia in inflammatory bowel disease – a practical approach. Ann Gastroenterol (2013) 26:104–13.
254
WernerTWagnerSJMartinezIWalterJChangJSClavelTet alDepletion of luminal iron alters the gut microbiota and prevents Crohn’s disease-like ileitis. Gut (2011) 60:325–33.10.1136/gut.2010.216929
255
CarrierJCAghdassiEJeejeebhoyKAllardJP. Exacerbation of dextran sulfate sodium-induced colitis by dietary iron supplementation: role of NF-kappaB. Int J Colorectal Dis (2006) 21:381–7.10.1007/s00384-005-0011-7
256
DostalALacroixCPhamVTZimmermannMBDel’hommeCBernalier-DonadilleAet alIron supplementation promotes gut microbiota metabolic activity but not colitis markers in human gut microbiota-associated rats. Br J Nutr (2014) 111:2135–45.10.1017/S000711451400021X
257
BarrettCWShortSPWilliamsCS. Selenoproteins and oxidative stress-induced inflammatory tumorigenesis in the gut. Cell Mol Life Sci (2017) 74:607–16.10.1007/s00018-016-2339-2
258
OjuawoAKeithL. The serum concentrations of zinc, copper and selenium in children with inflammatory bowel disease. Cent Afr J Med (2002) 48:116–9.
259
KaushalNKudvaAKPattersonADChiaroCKennettMJDesaiDet alCrucial role of macrophage selenoproteins in experimental colitis. J Immunol (2014) 193:3683–92.10.4049/jimmunol.1400347
260
NortonRLHoffmannPR. Selenium and asthma. Mol Aspects Med (2012) 33:98–106.10.1016/j.mam.2011.10.003
261
MichielanAD’IncaR. Intestinal permeability in inflammatory bowel disease: pathogenesis, clinical evaluation, and therapy of leaky gut. Mediators Inflamm (2015) 2015:628157.10.1155/2015/628157
262
AriaeeNFaridRShabestariFShabestariMJabbari AzadF. Trace elements status in sera of patients with allergic asthma. Rep Biochem Mol Biol (2016) 5:20–5.
263
ReevesPGNielsenFHFaheyGCJr. AIN-93 purified diets for laboratory rodents: final report of the American Institute of Nutrition ad hoc writing committee on the reformulation of the AIN-76A rodent diet. J Nutr (1993) 123:1939–51.
Summary
Keywords
westernized diet, inflammatory bowel disease, asthma, saturated fat, micronutrients, microbiota
Citation
Statovci D, Aguilera M, MacSharry J and Melgar S (2017) The Impact of Western Diet and Nutrients on the Microbiota and Immune Response at Mucosal Interfaces. Front. Immunol. 8:838. doi: 10.3389/fimmu.2017.00838
Received
31 January 2017
Accepted
03 July 2017
Published
28 July 2017
Volume
8 - 2017
Edited by
Raquel Hontecillas, Virginia Tech, United States
Reviewed by
Mourad Aribi, University of Tlemcen, Algeria; Christopher Alan Jolly, University of Texas at Austin, United States
Updates

Check for updates
Copyright
© 2017 Statovci, Aguilera, MacSharry and Melgar.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Silvia Melgar, s.melgar@ucc.ie
Specialty section: This article was submitted to Nutritional Immunology, a section of the journal Frontiers in Immunology
Disclaimer
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.