Abstract
For many decades viral infections have been suspected as ‘triggers’ of autoimmune disease, but mechanisms for how this could occur have been difficult to establish. Recent studies have shown that viral infections that are commonly associated with viral myocarditis and other autoimmune diseases such as coxsackievirus B3 (CVB3) and SARS-CoV-2 target mitochondria and are released from cells in mitochondrial vesicles that are able to activate the innate immune response. Studies have shown that Toll-like receptor (TLR)4 and the inflammasome pathway are activated by mitochondrial components. Autoreactivity against cardiac myosin and heart-specific immune responses that occur after infection with viruses where the heart is not the primary site of infection (e.g., CVB3, SARS-CoV-2) may occur because the heart has the highest density of mitochondria in the body. Evidence exists for autoantibodies against mitochondrial antigens in patients with myocarditis and dilated cardiomyopathy. Defects in tolerance mechanisms like autoimmune regulator gene (AIRE) may further increase the likelihood of autoreactivity against mitochondrial antigens leading to autoimmune disease. The focus of this review is to summarize current literature regarding the role of viral infection in the production of extracellular vesicles containing mitochondria and virus and the development of myocarditis.
Highlights
Mitochondrial extracellular vesicles contain CVB3
Extracellular vesicles containing mitochondrial components activate TLR4/NLRP3
Autoantibodies against mitochondria are found in patients with myocarditis
The autoimmune regulator AIRE may bind few mitochondrial genes
Introduction
The immune system protects the host against infection by specifically recognizing and eliminating foreign pathogens, but in the process must avoid responding to host antigens. During maturation of the immune system, immune cells that react against self-antigens are eliminated providing an immune system that is ‘tolerant’ to self (). T cells that escape central tolerance are additionally regulated with peripheral tolerance mechanisms that include the conversion of self-reactive T cells to regulatory T cells. Autoimmunity that progresses to autoimmune disease can occur if this process breaks down (). Genetic and environmental factors contribute to the development of autoimmune diseases, but twin studies indicate that environmental factors are a significant contributor (, ). For many decades viral infections have been suspected as ‘triggers’ of autoimmune disease, but mechanisms for how this could occur have been difficult to establish (, , ). Recent findings suggest that subversion of host cellular extracellular vesicle (EV) processing by viral infections may lead not only to activation of the immune response against the virus but also against mitochondrial or other self-antigens thereby contributing to the development of autoimmune disease. In this review, we describe EVs with mitochondrial content, their relationship to viral infections such as coxsackievirus B3 (CVB3), and their potential role in driving autoimmune diseases with a focus on myocarditis.
Extracellular vesicles
In the last decade there has been a major increase in interest in EVs in their role in cell-to-cell communication, as biomarkers and as therapeutics (, ). Many terms and definitions are used to describe EVs, and in this review we use the term EVs to refer to all extracellular, lipid bilayer, sub-cellular particles and their functional contents with sizes ranging from several nm to several μm (, ). This umbrella term includes the widely recognized major subgroups termed exosomes, microvesicles, and apoptotic bodies, which are currently distinguishable only by their theorized origin and size but not by experimental means (). EVs are engaged in cellular communication in both health and disease as transporters of molecular signals in the form of nucleic acids (e.g., DNA, mRNA, microRNA/miRs, long-coding RNA/lcRNA and circular RNA/circRNA), proteins and lipids ().
When tissue environments are perturbed or cells become damaged as occurs during a viral infection, EV content changes based on cellular reprogramming in response to pathological stress (, ). EVs can either activate or inhibit innate and adaptive immune cell responses based on their content (–). EVs have been demonstrated to express major histocompatibility complex (MHC) class I or II and directly activate innate antigen presenting cells (APCs) or adaptive T and B cells in an antigen/self-antigen-specific manner (, ). Tetraspanins like CD9, CD63 and CD81, which are commonly used to characterize EVs, bind factors on innate immune cells like integrins (i.e., CD11b) that are important in activating and modulating immune responses (, ).
Viral infection and EVs
Importantly, many viruses use EV cellular machinery (i.e., exosome endosomal sorting complexes required for the transport/ESCRT pathway) for viral transmission such as cytomegalovirus, coxsackievirus, SARS-CoV-2, human immunodeficiency virus 1 (HIV-1), hepatitis viruses B, C and E (HBV, HCV, and HEV), and multiple members of the human herpesvirus (HHV) family (reviewed in (–). As a result, EVs can contain infectious virus, viral particles and/or viral proteins following infection that can subvert the immune response to promote viral replication. Important from an autoimmune disease context, a ‘mix’ of self and foreign antigens in/on EVs that may occur after viral infection may be presented to APCs and drive the immune response to target not only the infectious agent but also host antigens resulting in an autoimmune response.
EVs and autoimmune disease
The role of EVs in the development of autoimmune disease has been studied in patients and animal models. A review article by Tian et al. recently examined the role of EVs in a number of autoimmune diseases including thyroiditis, systemic lupus erythematosus (SLE), multiple sclerosis (MS), rheumatoid arthritis (RA), anti-phospholipid syndrome and type I diabetes (). Many investigators have reported that the number of circulating EVs are elevated in patients with autoimmune disease compared to controls (–); however, the wide variety of methods and procedures for isolating EVs as well as differences in storage conditions makes it difficult to interpret these findings.
Studies examining changes in EV content and function may provide a clearer picture of their effects in patients with autoimmune disease. MicroRNA (miRs) content in blood EVs (exosomes) were identified as biomarkers that distinguished patients with relapsing-remitting MS (i.e., miR-15b-5p, miR-451a, miR-30b-5p, miR-342-3p) from those with progressive MS or healthy controls (, ). Eight out of the nine miRs that were identified in the study were confirmed in a separate group of patients indicating that the miRs/EVs could serve as biomarkers to predict MS type. Similar results have been found for other autoimmune diseases like type I diabetes (). EVs have also been found to either promote inflammation/remodeling or to inhibit harmful immune responses for a number of autoimmune diseases including RA (–), Hashimoto’s thyroiditis (), type I diabetes (), SLE (), and myocarditis (). Additionally, EVs have been found with immunoglobulins (Ig) on their surface including IgG or internally in the form of self-antigen-complement-Ig immune complexes (ICs) (, ) suggesting that EVs may initiate and/or promote autoimmune damage and inflammation via ICs (–). Understanding the role of EVs in autoimmune disease is an emerging field with many questions still to be answered.
Mitochondrial extracellular vesicles
Another form of EVs that have received recent attention and may play a role in autoimmune disease are those that contain host cellular components such as mitochondria (e.g., primarily mitochondrial proteins or RNA) (). The earliest evidence of mitochondria and mitochondrial components in vesicles comes from a description by Vishwa Nath in 1932 of work by Koltzoff in 1906 studying sperm cells from Paratelphusa spinigera (). Koltzoff and Nath observed sub-cellular structures in crab spermatocytes undergoing a process that sounds similar to our current understanding of mitochondrial-derived vesicles (MDVs) (intracellular vesicles for mitochondrial transport) (–) or mitophagosomes (mitochondria fission products contained in autophagosomes for selective autophagy) (, ). Both MDVs and fragmented mitochondria fission products can be sent to autophagosomes for selective autophagy (, ) in a specific lysosomal degradation of mitochondria process referred to as ‘mitophagy’ (). The formation of the endoplasmic reticulum barrier around fragmented mitochondrial pieces (i.e., the autophagosome), a process that occurs in receptor-mediated mitophagy, is what Nath suspected protected these structures (which he only knew as another membrane around a mitochondrial mass) from rupture and lysis when exposed to acetic acid (). Another process that has been referred to as ‘mitoptosis’ involves selective removal of damaged mitochondria from the cell in vesicles (i.e., EVs) that are generally referred to as mitochondrial EVs () or mitovesicles () that contain whole or pieces of mitochondria (, ). See images of mitochondrial EVs budding from cardiac myocytes in Figure 1 (). Importantly, this process can occur for healthy physiological removal or transfer of mitochondria as well as for damaged mitochondria ().
Figure 1
EVs that contain mitochondria lack standardized definitions but are known to contain inner and outer mitochondrial membrane components, mitochondrial nucleic acid (i.e., DNA, RNA), and/or cardiolipin - a signature phospholipid that is more concentrated in mitochondrial membranes than cellular membranes (
Coxsackievirus B3-induced mitochondrial EVs
For decades, small non-enveloped RNA viruses like CVB3 were thought to cause host cell lysis as the primary method of viral dissemination, but recent evidence has demonstrated that infectious CVB3 and viral particles are released in mitochondrial EVs (
Figure 2

CVB3 localizes around and within murine cardiac mitochondria during myocarditis. Immunogold electron micrograph of mouse cardiomyocyte with CVB3 myocarditis on day 8 post infection. Black dots (arrows) are gold staining of CVB3 viral genome localizing around and in cardiomyocyte mitochondria. Scale bar, 100 nm. Mt, mitochondria; Mf, myofibril. Reused with permission from (
In 2017, Roberta Gottlieb’s laboratory published a study demonstrating CVB3 viral transmission via EVs containing mitochondrial components (
Figure 3

CVB3 identified in EVs using transmission electron microscopy. (A) Widefield transmission electron microscopic view of single virion (green arrow) in an extracellular EV or free virion (pink arrow) from culture of CVB3 in C2C12 cells. (B) Higher digital magnification (dashed purple box) of a virus-like particle revealed an icosahedral shape structure (dashed green polygon) slightly larger than 31 nm in diameter enclosed within a membrane structure. (C) Large EV containing multiple virions (green arrows). Scale bars = 100 nm. Reused with permission from (
The protein dynamin-related protein 1 (Drp1) is required for mitochondria to undergo fission. Drs. Gottlieb and Sin showed that CVB3 infection led to Drp1-induced mitochondrial fission resulting in damaged mitochondria being processed into mitophagosomes via mitophagy and released from host HL-1 cardiomyocytes in culture as mitochondrial EVs (
Figure 4

Formation of mitochondrial EVs from cardiomyocytes after CVB3 infection (1). CVB3 gains entry to cardiomyocytes via the coxsackievirus adrenoreceptor (CAR) or passive entry from previously formed mitochondrial EVs containing replicative virus (2). CVB3 mitochondrial localization induces mitochondrial stress and damage leading to (3a) mitochondrial-derived vesicle (MDV) formation and Drp1-mediated mitochondrial fission and recruitment of the endoplasmic reticulum (ER) for autophagosome formation alongside LC3 lipidation (LC3-II). (3b) MDVs containing replicative and or non-replicative viral particles may either eject from the cell or join multi-vesicular bodies before release from cardiomyocytes (MDVs can also be slated for receptor mediated mitophagy and potentially escape the cell without GABARAPL phosphorylation, which is not shown in this diagram) (4). LC3-II binds mitophagy adaptors situated on the outer mitochondrial membrane to form a mitophagosome with GABARAPL proteins on the endoplasmic reticulum (ER) facing the cytosol (5). Phosphorylation of the mitophagosome on GABARAPL proteins by tank-binding kinase 1 (TBK1) leads mitophagosomes to subsequent (6) lysosomal fusion and degradation (7). Non-phosphorylated mitophagosomes do not proceed to fusion with the lysosome but either (8) join the multivesicular body for cell release and dissemination or are ejected alone. The resulting EVs containing mitochondrial components and viral particles (replicative and/or non-replicative) we term as “mitopods” or mitochondrial escape-pods for CVB3. The two major sources of mitopods are MDV-derived or fission-derived. Another possible distinguishing feature of fission-derived versus MDV-derived mitopods would be an additional membrane derived from the ER. This figure was created using BioRender.
Mitochondrial autoimmunity and myocarditis
It turns out that many viruses are known to localize to mitochondria (
Mitochondrial autoantibodies in patients with myocarditis
Dr. Peter Schultheiss, a major contributor to the fields of cardiology and myocarditis, began identifying and characterizing autoimmune antibodies in patients with myocarditis in the 1970s. In 1978, Bolte and Schultheiss reported that 76% of 17 patients with viral myocarditis had autoantibodies in sera and 41% of these were anti-nuclear antibodies (
Another group independently reported that patients with various cardiomyopathies including myocarditis had autoantibodies reactive against mitochondrial proteins (
Mitochondrial autoantibodies in models of myocarditis
Although viral-induced myocarditis is often categorized as a distinct condition from autoimmune myocarditis clinically and in animal models, the distinction between the two conditions is not clear-cut because patients with viral myocarditis and mouse models of viral myocarditis have been demonstrated to develop autoantibodies and autoreactive T and B cells against cardiac myosin and other self-antigens including mitochondria (
Importantly, a study examining autoantibody levels that compared experimental autoimmune myocarditis (EAM) to CVB3-induced myocarditis in mice found that ANT was only produced after viral infection but not in EAM suggesting that viral infection was necessary for the production of mitochondrial autoantibodies whereas both models produced autoantibodies against cardiac myosin (
Anti-mitochondrial antibodies in rheumatic autoimmune diseases
Anti-mitochondrial antibodies (for example, antibodies that target cardiolipin, mitofusin 1, mitochondrial DNA or mitochondrial RNA) are commonly found in patients with rheumatic autoimmune diseases such as RA, SLE, and anti-phospholipid syndrome (
Activation of autoimmunity by mitochondrial EVs
One possible mechanism where myocarditis and other autoimmune diseases could be induced and/or exacerbated by mitochondrial EVs is by activation of Toll-like receptor (TLR)4, interleukin (IL)-1β and leucin-rich repeat (LRR)-containing protein (NLRP)3, which is a pathway that has been demonstrated to increase myocarditis and viral replication in CVB3 models of myocarditis (
However, not all mitochondria found in EVs stimulate the innate immune response. In some cases, healthy mitochondria within EVs are found to fuse with recipient mitochondria in cultured cardiomyocytes and in a mouse model of myocardial infarction where they improve mitochondrial function and disease (
Tolerance against mitochondrial antigens and myocarditis
As mentioned earlier, a key feature of the immune response that protects against the development of autoimmunity is the generation of tolerance to self-antigens that occurs in the thymus (
AIRE and tolerance to self
AIRE is a transcriptional regulator that protects against self-reactivity by inducing the production of tissue-specific antigens normally not expressed in the thymus, a process that occurs in medullary thymic epithelial cells (mTECs) (
AIRE and mitochondrial autoimmunity
To our knowledge, no studies examining the function of AIRE describe its ability to produce mitochondrial self-antigen. Two major studies exist with publically available data of AIRE genomic binding and related expression (
Table 1
| Gene Symbol | Nominal p value | FDR p value | LogFCa | Category |
|---|---|---|---|---|
| Mrpl13 | 0.0000163 | 0.000559 | -1.29492 | Mito Related |
| Mrps30 | 0.0000776 | 0.00182 | -0.85468 | Mito Related |
| Gls2 | 0.000243 | 0.00422 | -0.87328 | Mito Related |
| Mtarc1 | 0.000294 | 0.00486 | -0.74663 | Mito Related |
| Slc25a13 | 0.000842 | 0.0107 | -0.84998 | Mito Related |
| Cox7a2l | 0.000932 | 0.0116 | -0.87238 | Resp Chain |
| Tmem243 | 0.00111 | 0.0131 | -0.68091 | Mito Related |
| Cox17 | 0.00149 | 0.0161 | -0.67956 | Resp Chain |
| Immp1l | 0.00158 | 0.0167 | -0.58226 | Mito Related |
| Mtrf1l | 0.00211 | 0.0208 | -0.5228 | Mito Related |
| Mrpl22 | 0.00219 | 0.0215 | -0.58552 | Mito Related |
| Mtarc2 | 0.00239 | 0.0228 | -0.54555 | Mito Related |
| Mterf1 | 0.00289 | 0.0260 | -0.46945 | Mito Related |
| Mrpl47 | 0.00307 | 0.0273 | -0.52963 | Mito Related |
| Mto1 | 0.00388 | 0.0325 | -0.45504 | Mito Related |
| Tomm20 | 0.00433 | 0.0349 | -0.53508 | Mito Related |
| Micu2 | 0.0049 | 0.0381 | -0.46659 | Mito Related |
| Diablo | 0.00498 | 0.0385 | -0.47024 | Mito Related |
| Tk2 | 0.00512 | 0.0394 | -0.44682 | Mito Related |
| Bcat2 | 0.0069 | 0.0489 | -0.53663 | Mito Related |
Mitochondria related and respiratory complex genes expressed by AIRE in mice from Bansal et al. (
aBcat2, branched chain amino acid transaminase 2; Cox7a2l, cytochrome c oxidase subunit 7A2-like; Cox17, cytochrome c oxidase copper chaperone; Diablo, IAP-binding mitochondrial protein; Gls2, glutaminase 2; Immpl1, inner mitochondrial membrane peptidase subunit 1; LogFC, Log Fold-Change; Micu2, mitochondrial calcium uptake 2; Mito Related, mitochondrial related; Mrpl13, mitochondrial ribosomal protein L13; Mrpl22/47, mitochondrial ribosomal protein L22/47; Mrps30, mitochondrial ribosomal protein S30; Mtarc1/2, mitochondrial amidoxime reducing component 1/2; Mterf1, mitochondrial transcription termination factor 1; Mto1, mitochondrial tRNA translations optimization 1; Mtrf1l, mitochondrial translation release factor 1-like; Resp Chain, respiratory chain; Slc25a13, solute carrier family 25 member 13; Tk2, thymidine kinase 2; Tmem243, transmembrane protein 243; Tomm20, translocase of outer mitochondrial membrane 20.
Summary
In summary, we propose the following possible scenario for the role of mitochondrial EVs in the induction of autoimmune diseases like myocarditis. The initial infection with virus will activate antiviral TLRs like TLR3, 7, 8, 9 in the first few minutes/hours after infection. The virus will traffic to the mitochondria at the local site of infection and mitochondria within the virus’ favorite cell type/primary tropism to obtain a replicative advantage. The virus will be released from the cell in mitochondrial EVs. Mitochondrial components expressed within or on the surface of the EVs then activate TLR4 on APCs. The presence of virus/viral particles and mitochondrial components together may create a strong ‘adjuvant’ effect to activate the immune response. During the viremic stage of viral replication, which typically occurs in the first few days after viral infection, the virus within EVs can traffic through the bloodstream or lymphatics to the heart where infection of cardiac tissues can occur in a non-viral receptor specific manner via EVs or also with viral receptors if they are present in cardiac tissue. For example, CVB3 may enter cardiac cells via coxsackievirus-adenovirus receptor (CAR) which is expressed in the heart. Release of mitochondrial EVs from mitochondrially rich cardiomyocytes may drive a cardiac-specific autoimmune response because the mitochondrial content in/on EVs may contain heart specific mitochondrial antigens. TLR4 signaling has been found to be an important pathway in the pathogenesis of many autoimmune diseases including myocarditis. Autoantibodies against mitochondrial components are found in patients with many different autoimmune diseases including myocarditis and in viral animal models of myocarditis providing evidence of an autoimmune response against mitochondria. Whether mitochondrial EVs that originate from the heart occur at a sufficient level to activate a cardiac-specific autoimmune response may be one reason why myocarditis occurs only rarely. Defects in AIRE may also confer susceptibility to autoimmune responses against mitochondrial antigens in some patients.
Conclusions
For decades the question of whether viruses can cause autoimmune disease has lacked a plausible explanation. Evidence exists that viral infections cause myocarditis that is also associated with autoimmune responses against the heart in patients and animal models, yet how viruses could cause autoimmunity in myocarditis is not clear. Recent evidence substantiates that many viruses, and in particular the viruses that are associated with clinical cases of myocarditis, target mitochondria to promote viral replication and to evade the immune response they are ejected from cells within EVs. Often these EVs also contain mitochondrial components. It is known that EVs contain proteins, receptors and other components that identify them as originating from self-tissue. EVs that contain replicative virus and/or virus particles and mitochondrial components may form powerful danger signals to the immune system activating TLR4- a key pathway in the pathogenesis of myocarditis and DCM. Autoantibodies against mitochondrial components and specifically cardiac mitochondria are found in patients with myocarditis and DCM providing insight that viral infections may promote the release of mitochondrial antigens to activate an autoimmune response. Additionally, defects in AIRE may allow heightened self-reactivity against mitochondrial antigens. These mechanisms provide an explanation for how viral infections may initiate or promote autoimmune diseases like myocarditis.
Statements
Author contributions
DD: Conceptualization, Data curation, Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing. DB: Conceptualization, Visualization, Writing – review & editing. EM: Writing – review & editing. JS: Conceptualization, Writing – review & editing. TI: Writing – review & editing. DF: Conceptualization, Funding acquisition, Project administration, Supervision, Writing – original draft, Writing – review & editing.
Funding
The author(s) declare financial support was received for the research, authorship, and/or publication of this article. This research was supported in part by the NIH grant R01 HL164520 to DF and NIH TL1 TR002380 to DD, DB and DF.
Acknowledgments
We utilized previously published images from Robinson et al., 2014 (
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
The author(s) declared that they were an editorial board member of Frontiers, at the time of submission. This had no impact on the peer review process and the final decision.
Publisher’s note
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Summary
Keywords
autoimmune disease, extracellular vesicles, mitochondria, mitochondrial-derived vesicles, myocarditis, AIRE, coxsackievirus
Citation
Di Florio DN, Beetler DJ, McCabe EJ, Sin J, Ikezu T and Fairweather D (2024) Mitochondrial extracellular vesicles, autoimmunity and myocarditis. Front. Immunol. 15:1374796. doi: 10.3389/fimmu.2024.1374796
Received
22 January 2024
Accepted
28 February 2024
Published
14 March 2024
Volume
15 - 2024
Edited by
Chun Wai Mai, UCSI University, Malaysia
Reviewed by
Giorgio Mangino, Sapienza University of Rome, Italy
Sachiko Akashi-Takamura, Aichi Medical University, Japan
Updates

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Copyright
© 2024 Di Florio, Beetler, McCabe, Sin, Ikezu and Fairweather.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: DeLisa Fairweather, Fairweather.DeLisa@mayo.edu
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