Abstract
Francisella tularensis is the causative agent of a spectrum of diseases collectively known as tularemia. The extreme virulence of the pathogen in humans, combined with the low infectious dose and the ease of dissemination by aerosol have led to concerns about its abuse as a bioweapon. Until recently, nothing was known about the virulence mechanisms and even now, there is still a relatively poor understanding of pathogen virulence. Completion of increasing numbers of Francisella genome sequences, combined with comparative genomics and proteomics studies, are contributing to the knowledge in this area. Tularemia may be treated with antibiotics, but there is currently no licensed vaccine. An attenuated strain, the Live Vaccine Strain (LVS) has been used to vaccinate military and at risk laboratory personnel, but safety concerns mean that it is unlikely to be licensed by the FDA for general use. Little is known about the protective immunity induced by vaccination with LVS, in humans or animal models. Immunoproteomics studies with sera from infected humans or vaccinated mouse strains, are being used in gel-based or proteome microarray approaches to give insight into the humoral immune response. In addition, these data have the potential to be exploited in the identification of new diagnostic or protective antigens, the design of next generation live vaccine strains, and the development of subunit vaccines. Herein, we briefly review the current knowledge from Francisella comparative proteomics studies and then focus upon the findings from immunoproteomics approaches.
Introduction
The intracellular pathogen, Francisella tularensis, is the etiological agent of tularemia in humans and animals. It is increasingly being isolated in the United States and several European countries (Eliasson et al., ; Vorou et al., 2007), although humans are an accidental host. The genus Francisella contains the species F. tularensis, F. novicida, and F. philomiragia. F. tularensis is further subdivided into three subspecies: F. tularensis subspecies tularensis (type A), F. tularensis subspecies holarctica (type B), and F. tularensis subspecies mediaasiatica (Sjostedt, 2001). Strains of subspecies tularensis and holarctica are primarily responsible for human disease, whilst F. philomiragia and F. novicida are avirulent in healthy humans. F. tularensis subsp. mediaasiatica is a restricted entity with unique biochemical characteristics that has only been isolated in Kazakhstan and Turkmenistan in Central Asia and exhibits virulence in rabbits similar to Type B strains. In recent years, F. tularensis has gained significant attention as one of six organisms designated as high priority agents that could be exploited as agents of bioterror (category A pathogens) by the US Center for Disease Control and Prevention. Combined, the low infectious dose and ease of dissemination of type A F. tularensis have made it a threat to both military personnel and civilians alike (Dennis et al., ).
There is currently no licensed vaccine available in North America, although an attenuated type B strain, known as the Live Vaccine Strain (LVS), has been used to vaccinate military personnel and laboratory workers. This strain was derived from a Soviet strain in the 1960s and was not rationally attenuated, leading to concerns regarding residual virulence. In addition, the lack of knowledge of the attenuating mutations and mechanisms of protection means that LVS is unlikely to be licensed for use in the general population in the near future. Despite these concerns, LVS remains the gold standard against which new tularemia vaccine candidates will be judged. LVS is also currently the only tularemia vaccine candidate to have been evaluated and shown to be effective in humans, and after the terrorist attacks of 2001, there has been renewed interest in improving the manufacturing and testing of LVS (Pasetti et al., 2008). In addition, LVS remains virulent in animals, making it an attractive surrogate for virulent strains of the pathogen, which require use of specialized containment facilities.
Despite the recent surge of interest in F. tularensis, there remain many unknowns, for example in the mechanisms of pathogen virulence or the host immune response. The prevailing dogma is that humoral immunity plays a critical role in defense against extracellular pathogens, whilst cell-mediated immunity is more important for clearance of intracellular pathogens, such as F. tularensis. It is unclear whether this is true for Francisella, and whether the roles of the immune system are different for type A and B strains. Recent studies have confirmed the role of cell-mediated immunity in protection against tularemia, and in addition the importance of humoral immunity is also now recognized (reviewed in Kirimanjeswara et al., ). Many laboratories have reported that a robust anti-Francisella antibody response is generated in humans within 2 weeks of LVS vaccination or actual infection (Koskela and Herva, 1982; Koskela and Salminen, 1985; Tarnvik, 1989; Waag et al., 1995; Janovska et al., ), but the role of these antibodies in protective immunity remains unclear. A review of host immunity toward F. tularensis described the current knowledge in more depth and suggests that a synergy between humoral and cell-mediated immunity is required to induce effective protection (Kirimanjeswara et al., ). If either LVS is to be licensed, or next generation tularemia vaccines are to be successfully developed, there needs to be an understanding of the immune mechanisms in the host that need to be activated to induce protective immunity. This in turn requires a fundamental understanding of the mechanisms of virulence of F. tularensis.
For many years knowledge of Francisella virulence factors has been lacking, with no classical bacterial virulence factors having been identified. Despite a marked increase in the intensity of research surrounding Francisella, there is still not a complete explanation of how the pathogen can disseminate and proliferate so readily in the mammalian host. The completion of increasing numbers of Francisella genome sequences, commencing with that of strain SCHU S4 (Karlsson et al., ; Prior et al., 2001; Larsson et al., 2005), has propelled comparative Francisella genomics (Samrakandi et al., 2004; Rohmer et al., 2006, 2007; Champion et al., ) and proteomics studies (Hubalek et al., ; Twine et al., 2005a; Pavkova et al., 2006) toward identification of putative virulence genes and proteins. Genome comparisons (reviewed in Titball and Petrosino, 2007) have aided in the mapping of Francisella evolution and adaptation to different environmental niches (Karlsson et al., ; Prior et al., 2001; Larsson et al., 2005), whilst comparisons of the proteomes of in vitro grown strains of Francisella differing in virulence have revealed both similarities and differences in the profile of expressed proteins (Hubalek et al., ; Twine et al., 2005a; Pavkova et al., 2006). Such differences may shed light upon the molecular mechanisms of the marked virulence differences between the subspecies.
Proteomics studies have also extended to the characterization of the repertoire of proteins reactive with sera from convalescent or vaccinated subjects. The broad study of large sets of proteins involved in the host immune response has been termed “immunoproteomics,” and provides information regarding Francisella immunodominant antigens. This is increasing knowledge of Francisella proteins that stimulate the immune system, which can then be used in the development of subunit vaccines and diagnostics, in addition to determining potential correlates of protection. Given the relative rarity of human cases of tularemia, many of the studies of the host response to vaccination or infection with tularemia have been carried out in animal models of tularemia. The murine model of tularemia is widely used (animal models of tularemia were recently reviewed in Rick and Wu, 2007). Animal studies in the past and more recently have used rabbits (Larson, 1946; Bell et al., ; Skrodzki, 1961), rats (Downs and Coriell, ; Downs et al., ; Raymond and Conlan, 2009; Wu et al., 2009; Ray et al., 2010), guinea pigs (Bell et al., ; Eigelsbach and Downs, ; Eigelsbach et al., ), and non-human primates (Eigelsbach et al., ; Nelson et al., 2010).
In this article we briefly give an overview of comparative studies of Francisella proteomes, approaches used to study the immunoproteome of Francisella, and the characteristics of the reported immunoreactive proteins.
The Francisella Proteome
Comparative proteomics of francisella
Comparative genomics studies and molecular typing methods provide evidence that F. novicida, could be the common ancestor of F. tularensis subspecies holarctica, subspecies mediaasiatica and subspecies tularensis (Svensson et al., 2005). Type A strains have recently been further divided into type AI and AII, based largely on their geographical distribution (Svensson et al., 2005; Staples et al., 2006) and have been shown to differ in virulence in the mouse model of tularemia (Twine et al., 2006c; Molins et al., 2010). Genomic comparisons have allowed advances in explaining the differing virulence and infectivity of the four F. tularensis subspecies, but are insufficient to offer a complete understanding. Thus, proteomics studies have also been carried out, comparing the in vitro protein expression profiles of all four subspecies in hopes of addressing the differences in virulence that genomic studies alone, cannot (Hubalek et al., ; Pavkova et al., 2006).
The results of such studies have shown that very few differences exist at the proteome level between strains within the same subspecies, but a much greater number of differences were observed in proteome maps comparing the subspecies (Hubalek et al., ). The authors concluded that the proteomes of strains from subspecies tularensis and mediaasiatica showed greater similarity to one another than to the proteomes of strains from subspecies holarctica (Hubalek et al., ; Pavkova et al., 2006). The variations observed included differences in protein abundance, as well as the apparent presence and absence of specific proteins. Charge variants of certain proteins may account for some of the detected differences in protein abundance between subspecies, but it is also thought that the amount and method of gene expression and regulation may vary between subspecies of F. tularensis.
Species novicida and mediaasiatica are essentially avirulent in humans, therefore, of particular interest are proteins that are uniquely expressed, or up-regulated in both subspecies tularensis and holarctica, but not in novicida or mediaasiatica. Such differences in the proteomes of these subspecies may provide insight into the mechanisms used by virulent subspecies of F. tularensis. Using two-dimensional electrophoresis (2DE), Hubalek et al. () compared the proteomes of representative strains of subspecies tularensis, holarctica, and mediaasiatica and identified 27 proteins that were either unique to, or produced in at least a twofold greater abundance in subspecies tularensis. These proteins are listed in Table 1, and the similarities and differences summarized in Figure 1. Seventeen of these proteins, included in Table 1, were found to have charge or mass variants present in the less virulent subspecies, possibly as a result of strain specific amino acid substitutions, or differences in the post-translational modification of the proteins in question (Hubalek et al., ). An additional nine proteins; signal recognition particle receptor FtsY (FTT_0120), ribosomal protein L10 (FTT_0142), 50S ribosomal protein L23 (FTT_0327), B-lactamase precursor (FTT_0611/0681), thymidylate synthase (FTT_1229), fructose bis-phosphate aldolase (FTT_1365), phosphoglycerate kinase (FTT_1367), transketolase I (FTT_1369), ClpB protein (FTT_1769), also shown in Table 1, were reported to be produced with at least twofold greater abundance in subspecies tularensis when compared to either mediaasiatica or holarctica. Heat shock protein ClpB has been shown to play a vital role in the multiplication of Francisella in target organs during infection, and thus the overall virulence and infectivity of the bacteria (Meibom et al., 2008). Finally, three proteins reported in this study were only detected in 2DE of subspecies tularensis; FTT_0607, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, FTT_0435, a carbon–nitrogen hydrolase and FTT_1157, a type IV pili lipoprotein. Type IV pilin proteins, such as PilA have been shown to play a significant role as virulence factors of Francisella (Forslund et al., ). The loss of the pilA gene also represents one of the major events that has led to the marked attenuation of the type B LVS strain (Salomonsson et al., 2009). While the pilA gene is present in F. novicida, and in pathogenic strains of subspecies holarctica, it does not appear that it functions as a component of a functional type IV pilin protein, but rather serves as a secretion system (Hager et al., ).
Table 1
| Accession number | Protein name | Profile in subsp. tularensis | Immunoreactive in convalescent/immune sera | Reference |
|---|---|---|---|---|
| FTT_0018 | Secretion protein | Unique | Human | Pavkova et al. (2006) |
| FTT_0075 | Succinate dehydrogenase iron-sulfur subunit | Charge variant | Mouse | Hubalek et al. () |
| FTT_0120 | Signal recognition particle receptor FtsY | Increased expression | No | Hubalek et al. () |
| FTT_0142 | Ribosomal protein L10 | Increased expression | No | Hubalek et al. () |
| FTT_0316 | Ribosome recycling-factor | Charge variant | No | Hubalek et al. () |
| FTT_0327 | 50S ribosomal protein L23 | Increased expression | No | Hubalek et al. () |
| FTT_0336 | 50S ribosomal protein L24 | Charge variant | No | Hubalek et al. () |
| FTT_0371 | Conserved hypothetical protein | Unique | No | Hubalek et al. () |
| FTT_0373c | Nucleoside diphosphate kinase | Charge variant | Hubalek et al. () | |
| FTT_0389 | NAD-specific glutamate dehydrogenase | Increased expression | No | Pavkova et al. (2006) |
| FTT_0435 | Putative carbon–nitrogen hydrolase | Unique | No | Hubalek et al. () |
| FTT_0607 | 4-Hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Unique | No | Hubalek et al. () |
| FTT_0611/0681 | B-lactamase precursor | Increased expression | No | Hubalek et al. () |
| FTT_0613 | 15.7 kDa putative exported protein | Unique | No | Hubalek et al. () |
| FTT_0896 | Phosphoribosylaminoimidazole carboxylase, catalytic subunit | Charge variant | No | Hubalek et al. () |
| FTT_0903 | Hypothetical protein | Unique | No | Pavkova et al. (2006) |
| FTT_1043 | FKBP-type peptidyl-prolyl cis–trans isomerase family protein | Increased expression | Mouse | Pavkova et al. (2006) |
| FTT_1157c | Type IV pili lipoprotein (PilP) | Unique | No | Hubalek et al. (), Pavkova et al. (2006) |
| FTT_1181c | γ-Glutamyltranspeptidase | Charge variant | No | Hubalek et al. () |
| FTT_1229 | Thymidylate synthase | Increased expression | No | Hubalek et al. () |
| FTT_1241 | Serine hydroxymethyltransferase | Charge variant | No | Hubalek et al. () |
| FTT_1260 | Hypothetical protein | Unique | No | Pavkova et al. (2006) |
| FTT_1346/1701 | Hypothetical protein | Increased expression | No | Pavkova et al. (2006) |
| FTT_1357c | Intracellular growth locus, subunit C | Charge variant | Mouse | Hubalek et al. () |
| FTT_1365 | Fructose bis-phosphate aldolase | Increased expression | No | Hubalek et al. () |
| FTT_1367 | Phosphoglycerate kinase | Increased expression | No | Hubalek et al. () |
| FTT_1369 | Transketolase I | Increased expression | Yes | Hubalek et al. () |
| FTT_1377 | 3-Oxoacyl-[acyl-carrier-protein] synthase II | Charge variant | No | Hubalek et al. () |
| FTT_1539c | Hypothetical protein FTT__1539c | Charge variant | Mouse, human | Hubalek et al. () |
| FTT_1651 | Conserved hypothetical protein | Unique | No | Pavkova et al. (2006) |
| FTT_1666 | 3-Hydroxyisobutyrate dehydrogenase | Unique | No | Pavkova et al. (2006) |
| FTT_1674 | Riboflavin synthase, β subunit | Charge variant | No | Hubalek et al. () |
| FTT_1769 | ClpB protein | Increased expression | Human | Hubalek et al. () |
| FTT_1794 | Heat shock protein | Charge variant | No | Hubalek et al. () |
Proteins observed at higher levels, or only at detectable levels in subspecies tularensis.
Figure 1
A small number of proteins that were expressed at detectable levels only in subspecies tularensis, or appear to be expressed in greater amounts in this subspecies have also been found to be immunoreactive in immune or convalescent sera, as highlighted in Table 1. These include the putative virulence factor IglC, which is expressed as a unique charge variant in subspecies tularensis, as well as an FKBP-type peptidyl-prolyl cis–trans isomerase family protein (FTT_1043). Whilst it has not been conclusively shown to be true in Francisella, homologs of the latter protein in other intracellular pathogens such as Legionella, Neisseria, Chlamydia, and Trypanosomes play a key role in virulence and ensuring the uptake of these pathogens by host cells (Hacker et al.,
Also using gel-based comparative proteomics, the proteome of an attenuated, spontaneous mutant of SCHU S4, was compared with the parent strain, SCHU S4 (Twine et al., 2005a). The attenuated strain, denoted FSC043, was found to be avirulent in mice and outperformed LVS as a live vaccine strain (Twine et al., 2005a). The study determined that the strain had undergone a recombination event, resulting in the expression of a fusion protein, comprising the N-terminal half of the hypothetical protein FTT_0918 and the C-terminal half of hypothetical FTT_0919 as a single protein (Twine et al., 2005a). A similar defect, resulting in the expression of a homologous protein in LVS was also observed (Twine et al., 2005a), and has been shown to be a key cause of the attenuation of LVS in mice (Salomonsson et al., 2009). Early studies did not determine the role of the protein, FTT_0918, but show the utility of the corresponding deletion mutant as a rationally attenuated live vaccine strain in the mouse model of tularemia (Twine et al., 2005a). Since then, there have been several studies investigating the role of these proteins, which have no homology to any other proteins listed in the NCBInr. They have been proposed to be a novel family of potentially membrane associated proteins and involved in iron uptake and regulation (Lindgren et al., 2009). One study has denoted FTT_0918 as fupA, and the hybrid gene in LVS as fupA/B, with fupAB having a significant role in the siderophore-mediated iron uptake mechanism of LVS (Sen et al., 2010). The functionality of the fusion protein in the attenuated SCHU S4 strain has not been determined. However, genomics studies alone would have been unable to predict the expression of the fusion protein. This information has since been exploited in tularemia vaccine development for the construction of rationally attenuated live vaccine strains (Kadzhaev et al.,
In order to work toward more complete proteome coverage, many complementary approaches need to be undertaken, including subfractionation of the proteome into, for example, the membrane subproteome or glycoproteome.
The francisella membrane proteome
Membrane proteins, particularly those exposed to the extracellular environment, can play important roles in the initial infection stages and the overall virulence and survival of the bacteria within a host (Haake et al.,
Using density gradient centrifugation, OMPs from LVS and SCHU S4 were purified, leading to the identification of 12 OMPs, which are listed in Table 2 (Huntley et al.,
Table 2
| Accession number | Protein name | Reference |
|---|---|---|
| FTT_0842 | Peptidoglycan-associated lipoprotein | Huntley et al. ( |
| FTT_1095c | Hypothetical protein | Huntley et al. ( |
| FTT_1724c | Outer membrane protein tolC precursor | Huntley et al. ( |
| FTT_1156c | Type IV pilin multimeric outer membrane protein | Huntley et al. ( |
| FTT_1258 | Outer membrane efflux protein | Huntley et al. ( |
| FTT_1573c | Outer membrane protein | Huntley et al. ( |
| FTT_0583 | Outer membrane associated protein | Huntley et al. ( |
| FTT_1043 | FKBP-type peptidyl-prolyl cis–trans isomerase family protein | Huntley et al. ( |
| FTT_0918 | Hypothetical protein | Huntley et al. ( |
| FTT_0919 | Hypothetical protein | Huntley et al. ( |
| FTL_0439 | YapH-LVS | Huntley et al. ( |
| FTT_0729 | ABC transporter, membrane protein | Janovska et al. ( |
Francisella tularensis LVS outer membrane proteins, isolated using density gradient centrifugation.
Putative outer membrane or cell surface exposed proteins have been identified in Francisella as possibly playing a role in the adherence of the bacteria to human lung cells. Using surface biotinylation and protein purification by the use of immobilized streptavidin beads, one study identified seven putative surface exposed proteins; Chaperone protein DnaK (FTT_1269), chaperone protein GroEL (FTT_1696), hypothetical membrane protein (FTT_0119), Outer membrane associated protein FopA (FTT_0583), intracellular growth locus, subunit A (FTT_1714), conserved hypothetical lipoprotein (FTT_1347), and hypothetical protein (FTT_1441), also identified as bacterioferritin in LVS (Melillo et al., 2006). Of particular interest to this study was hypothetical membrane protein FTT_0119, also annotated as FsaP in LVS. When expressed in a non-adhering Escherichia coli strain, this protein enabled E. coli to adhere to A549 human lung epithelial cells. Furthermore, it has been shown that FsaP is present on the cell surface of F. tularensis subsp. holarctica, which readily adheres to this same cell line. However, it is absent from the cell surface of F. novicida, which is unable to effectively adhere to A549 cells. Combined with the observed increased expression this protein in vivo (Twine et al., 2006a), and the production of antibodies in response to FsaP during tularemia infection, FTT_0119 could become a point of interest in exploring the pathogenesis of F. tularensis (Melillo et al., 2006).
The francisella glycoproteome
The long prevailing dogma that bacteria cannot modify proteins with carbohydrate moieties is being met with an increasing amount of evidence to the contrary. Discovery and characterization of bacterial glycoproteins presents many challenges, including the often unknown nature of the modifying carbohydrate moiety. Many studies focus upon characterization of a single purified protein whilst others are attempting to conduct more encompassing studies of the entire bacterial glycoproteome. Preliminary work strongly suggests that F. tularensis strains modify multiple proteins with unknown glycan moieties, although the covalent attachment of carbohydrate moieties to specific proteins has yet to be demonstrated.
Often the first indication that a protein is modified by glycan is aberrant migration on 1D- or 2D-PAGE. A type IV pilin protein, pilA (FTT_0890) was shown using 2DE to migrate to 18 kDa; a higher molecular weight than that predicted by the pilA gene sequence (14 kDa), suggesting post-translational modification (Forslund et al.,
Another study, exploited glycoproteomics approaches developed and optimized for the detection of eukaryotic glycans. Balonova et al. (
The francisella in vivo proteome
The capacity of F. tularensis to cause disease appears to be a reflection of its ability to multiply intracellularly and damage various host organs rather than its ability to produce any specific toxins. This requires F. tularensis to subvert or otherwise avoid a variety of host defenses that possess the potential to kill it. In particular, F. tularensis multiplies extensively in macrophages in vitro and in vivo (Golovliov et al.,
Francisella virulence factors
Also included in comparative proteomics studies, has been the analysis of the Francisella pathogenicity island (FPI); a highly conserved 16–19 gene cluster found in each of the four Francisella subspecies. In all subspecies the FPI is present in two identical copies and has been shown to code for several putative virulence factors. Within the FPI are 16 genes that have been found to be highly conserved across each of the four subspecies, leaving an additional 2–3 genes that display greater variability. These variable genes; pmcA and pdpD in F. novicida, may be absent from subspecies such as holarctica or present but interrupted or abbreviated, as in subspecies tularensis. However, the levels at which the FPI gene products are produced can vary between subspecies. PigA (FTT_1701/1346), for example, is present in a two- to sixfold greater abundance in SCHU S4, a subspecies tularensis strain, than in other subspecies (Pavkova et al., 2006). It has also been suggested however, that virulence factors coded for by the FPI can be regulated by genes not contained in the FPI itself. MglA, for example, has been found to be a major regulator of several virulence factors encoded both within and outside of the FPI (Lauriano et al., 2004).
The iglABCD operon is one of the most highly studied regions within the FPI with IglC being among the first of the FPI proteins to be elucidated. In a study by Golovliov et al. (
Modifications to IglC and its expression also result in a mutant that is severely hindered in its ability to grow in macrophages (Golovliov et al.,
The FPI itself contains several putative virulence factors, many of which may be common to all four Francisella subspecies, but it is not the only region of the genome that contains potential virulence factors.
The list of proteins with a potential role in pathogenesis is extensive. Despite the apparent diversity amongst these proteins though, there are several main classes into which these factors can be divided, including the FPI-encoded virulence factors that have already been discussed. Often, possible virulence factors are surface associated and may be part of a capsule, the lipopolysaccharide (LPS) or having to do with a type IV pili system. Proteins, such as the pilin subunit have been shown in Francisella strains, to have a role in host-cell recognition, virulence (Forslund et al.,
Approaches to Study Reactivity of Francisella Proteins with Antibodies
Scientists have been studying the antibody response to vaccination or infection with Francisella for many years. This has been accomplished by methods such as agglutination (Engelfried and Spear,
Western blotting
The 2D-Western blotting approach, combines 2D separation of the antigen with Western blotting. The antigen used in these studies is usually a bacterial cell lysate, or subproteome fraction (e.g., membrane) of in vitro grown bacteria. 2D-PAGE resolves the majority of bacterial proteins to a single protein spot, and retains the native protein processing and post-translational modifications. Proteins are transferred to nitrocellulose or PVDF membrane, and probed with primary sera and conjugated secondary antibody, as per traditional Western blotting (protocol is outlined in Gallagher et al.,
2D-Western blotting is one of the most accessible immunoproteomics approaches, that can be carried out in any laboratory equipped with gel-based electrophoresis and electroblotting equipment. It has, therefore, been adopted in many immunoproteomics studies. Despite its wide use, the approach has some disadvantages, which are largely related to limitations of gel-based 2D protein separations, including difficulties in resolving very large, small, hydrophobic or basic proteins. The analysis is also limited to those proteins expressed by bacteria under in vitro growth conditions, which may not be representative of the proteome expressed by the pathogen when proliferating in the host environment. 2D-Western blotting using bacteria isolated from host tissues has been carried out in tularemia proteomics work (Twine et al., 2006a), however the limited amount of antigen isolated makes this challenging to do with more than a few serum samples. In addition, the abundance of expressed proteins, whatever the growth conditions, can vary from a few copy numbers per cell to millions, therefore the observed intensity of immunoreactivity may not be representative of the immunogenicity of the protein, but its abundance. The relatively low throughput of 2D-Western blotting and mass spectrometry can be a bottleneck in immunoproteomics studies. Large format 2D gels offer superior proteome resolution, but the complete 2D-Western blotting experiment typically takes 4–5 days to perform. Experiments can be multiplexed, depending upon the resources of the lab, but this is still a relatively slow and laborious process. Despite the limitations of this approach, it remains by far the most accessible approach for most laboratories.
Immunoproteomics using a protein microarray
The bacterial proteome microarray has been described in a number of reports, including two studies conducted with Francisella immune sera (Eyles et al.,
The proteome microarray has many advantages compared with 2D-Western blotting approach. Firstly, the antigens are presumably present at equal concentrations in contrast with gel-based approaches, where the concentration of each protein is dependent upon expression levels during in vitro bacterial growth. In addition, if desired the entire theoretical proteome of the organism can be interrogated. Proteome microarrays also offer multiplexing, high throughput, and reduced serum volume requirements (2 μl versus ~50–100 μl for large 2D-Western blot). However, the proteins printed on the chip likely do not harbor native post-translational modifications, and may not be post-translationally processed in the same manner as native Francisella proteins, a drawback common to most recombinant protein expression systems. Other disadvantages include the cost and feasibility; many labs which are equipped to perform standard proteomic experiments are not able to fabricate proteome microarrays, and analysis, at present, is limited to specialist laboratories.
Immunoproteomics of Francisella Tularensis
In the following sections, we will review the immunoproteomics studies reported in the literature to date, including characteristics of the identified immunoreactive proteins and a brief comparison of the proteins identified using gel-based and proteome microarray studies.
Immunoproteomics in the murine model of tularemia
The majority of our recent knowledge on the pathogenesis of F. tularensis infection has been derived from studies of mice infected with either the attenuated live vaccine strain (LVS) or virulent strains of F. tularensis by the intradermal (i.d.) or respiratory route (Golovliov et al.,
Successful versus unsuccessful vaccination of mice
TLR4, the signal transducing element of the LPS receptor complex, is thought to play an important role in innate immunity against Gram-negative bacteria (Underhill, 2004). TLR4-defective (TLR4d) mice (C3H/HeJ) are reported to be more susceptible to subcutaneous challenge with LVS than wild type (TLR4+/+) mice (C3H/HeN). The LD50 of the pathogen was 100-fold lower for C3H/HeJ mice compared with that for C3H/HeN mice (Macela et al., 1996). A follow-up study used gel-based immunoproteomics to compare the repertoire of immunoreactive proteins generated by C3H/HeN and C3H/HeJ mice in response to infection with LVS (Havlasova et al.,
Table 3
| Locus tag | Protein name | Gene | Reactivity sera1 | Screening method2 | PSORT3 | Reference |
|---|---|---|---|---|---|---|
| FTT_0018 | Secretion protein | Human | Proteome microarray | Cytoplasmic membrane | Sundaresh et al. (2007) | |
| FTT_0037 | NADH dehydrogenase I G subunit | Mouse | 2D-Western blot | Unknown | Twine et al. (2010) | |
| FTT_0049 | N utilization substance protein A | nusA | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006a) |
| FTT_0060 | ATP synthase B chain | atpF | Mouse | Proteome microarray | Cytoplasmic | Eyles et al. ( |
| FTT_0062 | ATP synthase alpha chain | atpA | Mouse | 2D-Western blot | Unknown | Twine et al. (2006b, 2010) |
| FTT_0064 | ATP synthase beta chain | Mouse | 2D-Western blot | Cytoplasmic | Huntley et al. ( | |
| FTT_0071 | Citrate synthase | gltA | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_0074 | Succinate dehydrogenase catalytic and NAD flavoprotein subunit | shdA | Human, presumed type B; mouse | 2D-Western blot | Unknown | Twine et al. (2006b), Janovska et al. ( |
| FTT_0075 | Succinate dehydrogenase iron-sulfur subunit | sdhB | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b) |
| FTT_0077 | Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex | sucB | Human, type A; human, presumed type B; mouse | Proteome microarray/2D-Western blot | Cytoplasmic | Twine et al. (2006b), Eyles et al. ( |
| FTT_0083 | Hypothetical membrane protein | Human, presumed type B | Proteome microarray | Unknown | Sundaresh et al. (2007) | |
| FTT_0086 | Hypothetical protein | – | Mouse | 2D-Western blot | Unknown | Twine et al. (2006b) |
| FTT_0087 | Aconitate hydratase | Human, type A; human, presumed type B; mouse | 2D-Western blot | Cytoplasmic | Janovska et al. ( | |
| FTT_0101 | Conserved membrane hypothetical protein | – | Human, presumed type B; mouse | Proteome microarray | Cytoplasmic membrane | Eyles et al. ( |
| FTT_0106 | Efflux protein, RND family, MFP subunit | – | Human, presumed type B; mouse | Proteome microarray | Cytoplasmic membrane | Eyles et al. ( |
| FTT_0119 | Hypothetical membrane protein | – | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Unknown | Eyles et al. ( |
| FTT_0123 | Pseudogene | Human, presumed type B | Proteome microarray | Cyt mem | Sundaresh et al. (2007) | |
| FTT_0137 | Elongation factor Tu | tufA | Human, presumed type B; mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_0141 | 50S ribosomal protein L1 | rplA | Mouse | 2D-Western Blot | Unknown | Twine et al. (2006b) |
| FTT_0143 | 50S ribosomal protein L7/L12 | rplL | Human, presumed type B; mouse | 2D-Western blot | Unknown | Havlasova et al. ( |
| FTT_0183c | 30S ribosomal protein S1 | rpsA | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b, 2010) |
| FTT_0188 | Cell division protein | ftsZ | Human, presumed type B; mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b, 2010), Janovska et al. ( |
| FTT_0189 | UDP-3-O-[3-hydroxymyristoyl] | Mouse | 2D-Western Blot | Unknown | Twine et al. (2010) | |
| FTT_0194 | Conserved hypothetical membrane protein | Human, presumed type B | Proteome microarray | Cyt mem | Sundaresh et al. (2007) | |
| FTT_0196c | Glutamine synthetase | glnA | Mouse | Proteome microarray | Cytoplasmic | Eyles et al. ( |
| FTT_0208c | ABC transporter, ATP-binding protein | Mouse | 2D-Western blot | Unknown | Twine et al. (2006b) | |
| FTT_0209c | Periplasmic solute binding family protein | – | Mouse | 2D-Western blot | Unknown | Twine et al. (2006a,b, 2010) |
| FTT_0233 | Inner-membrane protein | yidC | Mouse | Proteome microarray | Cytoplasmic membrane | Eyles et al. ( |
| FTT_0280 | Major facilitator superfamily (MFS) transport protein | Human, presumed type B | Proteome microarray | Cyt mem | Sundaresh et al. (2007) | |
| FTT_0296 | Pyrrolidone-carboxylate peptidase | pcp | Mouse | 2D-Western blot/proteome microarray | Unknown | Havlasova et al. ( |
| FTT_0313 | 30S ribosomal protein S2 | rpsB | Mouse | 2D-Western blot | Unknown | Twine et al. (2006b) |
| FTT_0314 | Protein chain elongation factor EF-Ts | tsf | Mouse | 2D-Western blot/proteome microarray | Cytoplasmic | Havlasova et al. ( |
| FTT_0323 | Elongation factor G | fusA | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b, 2010) |
| FTT_0342 | 30S ribosomal protein S5 | rpsE | Mouse | 2D-Western blot | Unknown | Twine et al. (2006b) |
| FTT_0350 | DNA-directed RNA polymerase | rpoA1 | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006a, 2010) |
| FTT_0356 | Heat shock protein | htpG | Human, presumed type B; mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_0373c | Nucleoside diphosphate kinase | ndk | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_0385 | Hypothetical protein | – | Mouse | Proteome microarray | Unknown | Eyles et al. ( |
| FTT_0394 | Hypothetical protein | Human, presumed type B | 2D-Western blot | Unknown | Havlasova et al. ( | |
| FTT_0407 | Glycine cleavage complex protein T | gcvT | Human, presumed type B; mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_0448c | Glutaminyl-tRNA synthetase | glnS | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b) |
| FTT_0471 | 3-Dehydroquinate dehydratase | aroD | Human, presumed type B | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_0472 | Acetyl-CoA carboxylase, biotin carboxyl carrier protein subunit | accB | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Unknown | Havlasova et al. ( |
| FTT_0473 | Acetyl-CoA carboxylase, biotin carboxylase subunit | accC | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_0479 | PerM family | Human, presumed type B | Proteome microarray | Cytoplasmic membrane | Sundaresh et al. (2007) | |
| FTT_0503 | Succinyl-CoA synthetase | sucD | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_0504c | Succinyl-CoA synthetase subunit beta | Human type A | 2D-Western blot | Cytoplasmic | Janovska et al. ( | |
| FTT_0510 | DNA gyrase subunit B | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2010) | |
| FTT_0511 | Pyridoxine/pyridoxal 5-phosphate biosynthesis protein | – | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006a, 2010) |
| FTT_0535c | Malate dehydrogenase | mdh | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_0557 | lemA-like protein | Human, presumed type B | 2D-Western blot | Unknown | Janovska et al. ( | |
| FTT_0580 | Hypothetical protein | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2010) | |
| FTT_0583 | Outer membrane associated protein | fopA | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Outer membrane | Havlasova et al. ( |
| FTT_0614 | Apolipoprotein N-acyltransferase | Human, presumed type B | Proteome microarray | Cytoplasmic mem | Sundaresh et al. (2007) | |
| FTT_0627 | DNA binding protein | hupB | Human, presumed type B | 2D-Western blot | Unknown | Havlasova et al. ( |
| FTT_0630 | Host factor I for bacteriophage Q beta replication | hfq | Mouse | 2D-Western blot/proteome microarray | Cytoplasmic | Havlasova et al. ( |
| FTT_0682 | Hypothetical protein | – | Human, presumed type B; mouse | Proteome microarray | Periplasmic | Eyles et al. ( |
| FTT_0708 | Major facilitator superfamily (MFS) transport protein | Human, presumed type B | Proteome microarray | Cytoplasmic membrane | Sundaresh et al. (2007) | |
| FTT_0715 | Chitinase family protein – inner membrane | Mouse | 2D-Western blot | Unknown | Havlasova et al. ( | |
| FTT_0721c | Peroxidase/catalase | katG | Human type A; human, presumed type B; mouse | 2D-Western blot | Periplasmic space/outer membrane | Havlasova et al. ( |
| FTT_0724 | Part of pseudogene dacB1 | – | Mouse | Proteome microarray | – | Eyles et al. ( |
| FTT_0726c | Glycerophosphoryl diester phosphodiesterase family protein | Human, presumed type B | 2D-Western blot | Unknown | Janovska et al. ( | |
| FTT_0756 | Cation-efflux family protein | – | Mouse | Proteome microarray | Cytoplasmic membrane | Eyles et al. ( |
| FTT_0817 | Threonyl-tRNA synthetase | thrS | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b) |
| FTT_0831c | OmpA family protein | – | Human, presumed type B; mouse | Proteome microarray/2D-Western blot | Unknown | Eyles et al. ( |
| FTT_0849 | Bile acid symporter family protein | Human, presumed type B | Proteome microarray | Cytoplasmic mem | Sundaresh et al. (2007) | |
| FTT_0863 | LemA-like protein | – | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Cytoplasmic | Twine et al. (2006b, 2010), Eyles et al. ( |
| FTT_0869 | Hypothetical protein | – | Human, presumed type B; mouse | Proteome microarray | Unknown | Eyles et al. ( |
| FTT_0901 | Conserved hypothetical lipoprotein (17 kDa major membrane protein precursor) | lpnA | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Unknown | Havlasova et al. ( |
| FTT_0918 | Hypothetical protein | – | Human type A; mouse | 2D-Western blot | Outer membrane | Twine et al. (2006a, Janovska et al. ( |
| FTT_0949 | Pseudogene | Human, presumed type B | Proteome microarray | Unknown | Sundaresh et al. (2007) | |
| FTT_0956c | Hypothetical membrane protein | – | Human, presumed type B; mouse | Proteome microarray | Unknown | Eyles et al. ( |
| FTT_0975 | Hypothetical protein | – | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Unknown | Havlasova et al. ( |
| FTT_0989 | Hypothetical protein | – | Human, presumed type B | Proteome microarray | Unknown | Sundaresh et al. (2007) |
| FTT_0991 | Hypothetical lipoprotein | Human, presumed type B | Proteome microarray | Unknown | Sundaresh et al. (2007) | |
| FTT_1043 | FKBP-type peptidyl-prolyl cis–trans isomerase family protein | – | Mouse | 2D-Western blot | Outer Membrane | Twine et al. (2006b) |
| FTT_1060c | 50S ribosomal protein L9 | rplI | Human, presumed type B; mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_1097 | Hypothetical protein | – | Mouse | Proteome microarray | Unknown | Eyles et al. ( |
| FTT_1103 | Conserved hypothetical lipoprotein | – | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Unknown | Twine et al. (2006b, 2010), Eyles et al. ( |
| FTT_1115 | Preprotein translocase, subunit D, membrane protein | secD | Mouse | Proteome microarray | Cytoplasmic membrane | Eyles et al. ( |
| FTT_1116 | Preprotein translocase family protein | yajC | Human, presumed type B; mouse | Proteome microarray | Unknown | Eyles et al. ( |
| FTT_1125 | d-methionine binding transport protein, ABC transporter, membrane and periplasmic protein | metIQ | Mouse | Proteome microarray | Cytoplasmic membrane | Eyles et al. ( |
| FTT_1156c | Type IV pilin multimeric outer membrane | Mouse | 2D-Western Blot | Outer membrane | Huntley et al. ( | |
| FTT_1163 | Hypothetical membrane protein | – | Human, presumed type B; mouse | Proteome microarray | Cytoplasmic membrane | Eyles et al. ( |
| FTT_1201c | Oxidoreductase | – | Human, presumed type B; mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_1236 | Hypothetical protein | Mouse | Proteome microarray | Unknown | Eyles et al. ( | |
| FTT_1239 | Hypothetical membrane protein | Human, presumed type B | Proteome microarray | Cyt mem | Sundaresh et al. (2007) | |
| FTT_1269c | Chaperone protein (heat shock protein family 70 protein) | dnaK | Human type A; human, presumed type B; mouse | 2D-Western blot/proteome microarray | Periplasmic space | Havlasova et al. ( |
| FTT_1270c | Chaperone protein | grpE | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_1271 | Membrane-bound lytic murein transglycosylase A | mltA | Mouse | Proteome microarray | Unknown | Eyles et al. ( |
| FTT_1281c | Sigma 54 modulation protein | yhbH | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_1303c | Hypothetical protein | Mouse; human, presumed type B | 2D-Western blot/proteome microarray | Unknown | Sundaresh et al. (2007), Twine et al. (2010) | |
| FTT_1313c | Transcriptional elongation factor | greA | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b) |
| FTT_1314c | Type IV pili fiber building block protein | Human, presumed type B; mouse | Proteome microarray | Unknown | Eyles et al. ( | |
| FTT_1317c | Inosine-5′-monophosphate dehydrogenase | Human, presumed type B | 2D-Western blot | Unknown | Janovska et al. ( | |
| FTT_1333 | Hypothetical protein | Human, presumed type B | Proteome microarray | Unknown | Sundaresh et al. (2007) | |
| FTT_1345 | Hypothetical protein | pdpB | Mouse | 2D-Western blot | Outer Membrane | Havlasova et al. ( |
| FTT_1357/1712 | Intracellular growth locus, subunit C | iglC | Human, presumed type B; mouse | 2D-Western blot | Unknown | Havlasova et al. ( |
| FTT_1358/1713 | Intracellular growth locus, subunit B | iglB | Human, type A; mouse | 2D-Western blot/proteome microarray | Unknown | Eyles et al. ( |
| FTT_1368c | Glyceraldehyde-3-phosphate dehydrogenase | gapA | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_1369 | Transketolase | tktA | Mouse | 2D-Western blot | Unknown | |
| FTT_1373 | 3-Oxoacyl-[acyl-carrier-protein] synthase III | Mouse | 2D-Western blot | Unknown | Twine et al. (2010) | |
| FTT_1374 | Malonyl CoA acyl carrier protein | fabD | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_1376 | Acyl carrier protein | acpP | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b) |
| FTT_1389 | 3-Methyl-2-oxobutanoate hydroxymethyl-transferase | Mouse | 2D-Western blot | Unknown | Twine et al. (2010) | |
| FTT_1390 | Pantoate-beta-alanine ligase | panC | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b) |
| FTT_1402c | Hypothetical protein | Human, presumed type B | 2D-Western blot | Unknown | Janovska et al. ( | |
| FTT_1406c | Hypothetical protein | – | Mouse | Proteome microarray | Unknown | Eyles et al. ( |
| FTT_1416c | Hypothetical lipoprotein | – | Mouse | Proteome microarray | Unknown | Eyles et al. ( |
| FTT_1441 | Hypothetical protein | – | Human, presumed type B; mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_1444 | Exopolyphosphatase | ppx | Mouse | Proteome microarray | Cytoplasmic membrane | Eyles et al. ( |
| FTT_1460 | UDP-glucose/GDP mannose dehydrogenase | wbtE | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b) |
| FTT_1483c | Dihydrolipoamide dehydrogenase | Human, presumed type B | 2D-Western blot | Cytoplasmic | Janovska et al. ( | |
| FTT_1484c | Pyruvate dehydrogenase, E2 component | aceF | Human, type A; human, presumed type B; mouse | 2D-Western blot/proteome microarray | Cytoplasmic membrane | Eyles et al. ( |
| FTT_1485c | Pyruvate dehydrogenase, subunit E1 | Human, type A | 2D-Western blot | Cytoplasmic | Janovska et al. ( | |
| FTT_1498 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha | Human, presumed type B; mouse | 2D-Western blot | Unknown | Janovska et al. ( | |
| FTT_1510 | Aromatic amino acid transporter of the HAAAP family | Human, presumed type B | Proteome microarray | Cytoplasmic membrane | Sundaresh et al. (2007) | |
| FTT_1526 | Isocitrate dehydrogenase | idh | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Unknown | Havlasova et al. ( |
| FTT_1530 | Fusion product of 3-hydroxyacyl-CoA dehydrogenase and acyl-CoA-binding protein | fadB/acbP | Mouse | 2D-Western blot/proteome microarray | Cytoplasmic | Eyles et al. ( |
| FTT_1531 | 3-Ketoacyl-CoA thiolase | Human, presumed type B | 2D-Western blot | Cytoplasmic | Janovska et al. ( | |
| FTT_1533 | Part of pseudogene of a sugar transport protein | – | Mouse | Proteome microarray | – | Eyles et al. ( |
| FTT_1539c | Hypothetical protein | – | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Unknown | Havlasova et al. ( |
| FTT_1540c | Hypothetical protein | – | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Unknown | Eyles et al. ( |
| FTT_1557c | Two component response regulator | – | Mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_1572c | Outer membrane protein OmpH | oomph | Mouse | 2D-Western blot/proteome microarray | Unknown | Havlasova et al. ( |
| FTT_1591 | Lipoprotein | Human, presumed type B | 2D-Western blot | Unknown | Janovska et al. ( | |
| FTT_1569c | UDP-N-acetylglucosamine acyltransferase | lpxA | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b) |
| FTT_1610 | Pseudogene | Human, presumed type B | Proteome microarray | Unknown | Sundaresh et al. (2007) | |
| FTT_1616 | Cysteinyl tRNA synthetase | cysS | Mouse | 2D-Western blot | Unknown | Twine et al. (2006b) |
| FTT_1676 | Hypothetical membrane protein | – | Human, type A; human, presumed type B; mouse | 2D-Western blot/proteome microarray | Unknown | Eyles et al. ( |
| FTT_1695 | Chaperone protein, groES | groES | Human, presumed type B; mouse | 2D-Western blot | Cytoplasmic | Havlasova et al. ( |
| FTT_1696 | Chaperone protein, groEL | groEL | Human, presumed type B; mouse | 2D-Western blot/proteome microarray | Cytoplasmic | Havlasova et al. ( |
| FTT_1702 | Hypothetical protein | Human, presumed type B | 2D-Western blot | Unknown | Janovska et al. ( | |
| FTT_1712c | Intracellular growth locus, subunit C | iglC | Human, presumed type B | 2D-Western blot | Unknown | Janovska et al. ( |
| FTT_1713c | Intracellular growth locus, subunit B | iglB | Human, type A | 2D-Western blot | Unknown | Janovska et al. ( |
| FTT_1714c | Intracellular growth locus, subunit A | iglA | Human, presumed type B | 2D-Western blot | Cytoplasmic | Janovska et al. ( |
| FTT_1724 | Outer membrane protein tolC precursor | tolC | Human, presumed type B; mouse | Proteome microarray | Outer Membrane | Eyles et al. ( |
| FTT_1747 | Outer membrane protein | – | Mouse | 2D-Western blot/proteome microarray | Unknown | Twine et al. (2006b), Eyles et al. ( |
| FTT_1749 | Preprotein translocase, subunit B, chaperonin protein | Human, presumed type B | 2D-Western blot | Unknown | Janovska et al. ( | |
| FTT_1752 | Single stranded binding protein | ssb | Mouse | 2D-Western blot | Unknown | Havlasova et al. ( |
| FTT_1764c | Ferredoxin | Mouse | 2D-Western blot | Cytoplasmic | Twine et al. (2006b) | |
| FTT_1769 | ClpB | clpB | Human, presumed type B; mouse | 2D-Western blot | Inner membrane | Havlasova et al. ( |
| FTT_1775c | Voltage-gated ClC-type chloride channel clcA | clcA | Human, presumed type B | Proteome microarray | Cytoplasmic membrane | Sundaresh et al. (2007) |
| FTT_1778c | Hypothetical membrane protein | – | Mouse | 2D-Western blot/proteome microarray | Unknown | Twine et al. (2006b, 2010), Eyles et al. ( |
Proteins which are recognized by sera from convalescent humans or from LVS vaccinated mice.
1Whether protein was reactive with sera from human infected with type A or type B strains of F. tularensis, or vaccinated mice.
2Method by which protein immunoreactivity was detected.
Another study exploited the differing susceptibility of four mouse strains to protective vaccination with an LVS strain derived from ATCC LVS, in order determine whether a subset of immunoreactive proteins would be predictive of protective vaccination. LVS inoculated intradermally elicits a similar sub-lethal infection in the skin, liver, and spleen of both BALB/c and C57BL/6 mice that persists for approximately 2 weeks (Chen et al.,
A more recent study used an almost identical approach of exploiting the varying ability of LVS vaccination to protect BALB/c and C57/BL6 mouse strains against type A challenge with LVS. This study differed in the LVS preparation, using a new lot of LVS, denoted lot 17. This LVS vaccine lot was produced in compliance with Current Good Manufacturing Practice (CGMP) guidelines and this new vaccine formulation was evaluated in a recent Phase 1 clinical study in humans (El Sahly et al.,
Figure 2

Venn diagram showing the intersection of immunoreactive proteins observed to be reactive with sera from LVS vaccinated and protected BALB/c mice and LVS vaccinated and unprotected C57/BL6 mice (Twine et al., 2010). Left hand side lists immunoreactive proteins only observed to be reactive with sera from LVS vaccinated BALB/c mice, right hand side shows proteins only reactive with sera from C57/BL6 mice.
Vaccination of mice with killed LVS
During the 1920s and 1930s there was a significant effort to develop killed F. tularensis vaccines, due to the reduced intrinsic safety and liability concerns, compared with live vaccines. Studies with heat or formalin killed Francisella strains showed that vaccines made using these methods are generally ineffective (Foshay et al.,
Combined, the murine immunoproteomics studies have raised the possibility of using seroconversion to a particular subset of antigens of LVS as surrogates of or correlates of protection. The most challenging task in this regard is demonstrating that findings in mice are applicable to humans.
Immunoproteomics of human tularemia
The relative rarity of natural cases of type A tularemia have until recently, hampered the investigation of the humoral immune response in humans, including immunoproteomic studies. At the time of writing, only two studies describe the reactivity of human sera after type A infections, the first using a 2D-Western blotting approach (Janovska et al.,
The Francisella proteome microarray was used to screen sera from patients recovering from either type A or B Francisella infections contracted in North America (Sundaresh et al., 2007). Of the 46 sera from infected individuals, 10 were from confirmed cases of type A tularemia and 5 from confirmed type B tularemia. The immunodominant proteins were reported in this study (Table 3), and of the top 10 antigens, many have also been reported in immunoproteomics studies carried out with sera from LVS infected mice. In addition, a sufficient number of sera were screened, that a comparison of the repertoire of proteins reactive with sera from patients recovering from infection with different subtypes of Francisella and different routes of infection could be carried out. For example, authors noted that the protein FTT_1484 was more reactive with sera from patients suffering with ulceroglandular tularemia, compared with the sera from patients with the pneumonic form of the disease. Also, the protein FTT_0975 is more reactive with sera from type B infected individuals compared to type A infected individuals, although the authors note that a rigorous statistical assessment of these observations was outside the scope of their study.
Immunoproteomics was used to survey the repertoire of immunoreactive proteins with sera of human type B convalescents (Janovska et al.,
Figure 3

Frequency with which immunoreactive proteins from LVS proteome were observed to react with sera from patients recovering from type B Francisella tularensis infections. FTT_number refers to the locus tag of the ORF within the SCHU S4 genome sequence. *Indicates that sera reacted with isoforms of the same protein, shown is the highest observed frequency of reactivity. These data were originally reported by and tabulated in Havlasova et al. (
Characteristics of the total reported repertoire of immunoreactive proteins
Table 3 summarizes the antigenic proteins reported in recent immunoproteomics studies. Commonalities in the identified proteins across various studies can be noted and will be reviewed here, but comprehensive comparisons of the immunoproteomics data are hampered by distinct differences in the studies, including the immunoproteomics approach used, the host organism, the bacterial strain, source of strain, or treatment of the strain used for either infection or immunization, and the bacterial strain or subproteome used as the antigen. In total, 143 antigenic proteins were identified in 11 separate studies. Thirteen of these proteins were reported to be immunoreactive in half of the studies (FTT_1696, FTT_1269c, FTT_1696, FTT_0077, FTT_0137, FTT_0472, FTT_0583, FTT_0721c, FTT_0143, FTT_1103, FTT_0863, FTT_1484c). Of these proteins, FTT_2369c, FTT_1696, FTT_0583, FTT_0721c, and FTT_1103 were also noted to be components of LVS and SCHU S4 outer membrane preparations (Huntley et al.,
Examining the immunoreactive proteins by Clusters of Orthologous groups, antigenic proteins are observed to belong to a diverse array of functional categories (Figure 4), but proteins involved in energy production, chaperonins and proteins of unknown function were highly represented. Using the PSORT1b algorithm as a predictor of protein localization within the bacterial cell (Nakai and Horton, 1999; Gardy et al.,
Figure 4

Basic bioinformatic characterization of the repertoire of reported Francisella immunoreactive proteins. Graphical representation of (A) clusters of orthologous groups (COGs) and (B) predicted subcellular location using PSORT algorithm, for total reported immunoreactive proteins from Francisella immunoproteomics studies. Taken from the reported immunoreactive proteins listed in Table 3.
Although underrepresented in the entire dataset, membrane proteins are of some interest in immunoproteomics studies. Exposed on the outer bacterial surface, OMPs are generally involved in pathogen evasion of the host, intracellular survival and immune evasion. Characterization of LVS outer membrane proteins, listed 12 OMPs (Huntley et al.,
Of the OMPs identified by a proteomics approach (Huntley et al.,
The second reported presumed F. tularensis OMP was a 17-kDa T lymphocyte-reactive protein originally identified from an N-lauroylsarcosinate-insoluble protein preparation; this 17-kDa polypeptide was later named TUL4 (Sjostedt et al., 1990). TUL4 is conserved in F. tularensis and F. novicida strains, whereas an immunologically related protein is present in F. philomiragia. Additional studies confirmed the ability of TUL4 to stimulate lymphocyte proliferation, primarily CD4 T cells, and noted marked production of interleukin-2 (IL-2) and gamma interferon (IFN-γ) in response to TUL4 (Sjostedt et al., 1992a,b; Golovliov et al.,
Chaperonin proteins feature frequently in tularemia immunoproteomics studies. The chaperonin protein DnaK and GroEL (Cpn60) were reactive with the vast majority of sera screened. Chaperonins, also known as heat shock proteins are among the most highly conserved protein families in nature and are expressed in both prokaryotes and eukaryotes (Ranford and Henderson, 2002). These proteins facilitate the non-covalent assembly of proteins and when cells are exposed to stress conditions, such as temperature or pH, chaperones protect cellular proteins from aggregation and also promote refolding (Stewart et al., 2004). Chaperonins have also been observed to be activators of the innate immune system (Kol et al., 1999; Wallin et al., 2002), in addition to stimulating monocytes, macrophages and dendritic cells to produce nitric oxide and a variety of cytokines (Kol et al., 1999; Wallin et al., 2002). Although most heat shock proteins are widely accepted to be cellular proteins some, for example GroEL can also be released from cells, and stimulate a immune response (Henderson et al.,
Heat shock proteins (Hsps) have been reported to be dominant antigens for the host immune response to various pathogens, and have been attempted to be used in subunit vaccines against some pathogens (Khan et al.,
As noted in this article, the relative rarity of naturally occurring human tularemia and the ethical issues with human LVS vaccination and challenge studies, means that much of our recent knowledge stems from the murine model of tularemia. A significant challenge in this regard, is determining whether findings in mice are applicable to humans. Reviewing the complement of identified immunoreactive proteins listed in Table 3 and also in Figure 5, shows the overlap between antigens reactive with both murine and human sera. This shows that the 43 antigens have been observed to be reactive with LVS vaccinated murine and human convalescent sera.
Figure 5

Venn diagram showing the intersection of immunoreactive proteins observed to be reactive with sera from LVS vaccinated mice and human convalescent. From Table 3.
Conclusion
There continues to be a significant focus upon the development of efficacious, safe and licensable tularemia vaccines. Acellular or subunit vaccines carry far less risk than attenuated live vaccines, but there are limited reports of success with subunit tularemia vaccine development. The lack of knowledge of both Francisella virulence factors, protective antigens and the complex nature of immunity to Francisella is inhibiting vaccine development. Further studies of the humoral immune response, especially those in other animal models of tularemia that will bridge the differences between mice and humans, will be required to determine those antigens that can be predicted to be protective in humans. This will aid greatly in the development of subunit vaccines and selection of antigens for incorporation into diagnostic tests.
Statements
Acknowledgments
The authors thank Kelly Fulton, for critical reading of the manuscript.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
Francisella tularensis, LVS, immunoproteomics, proteome microarray, 2D-PAGE, antibody, vaccine, mouse vaccination
Citation
Kilmury SLN and Twine SM (2011) The Francisella Tularensis Proteome and its Recognition by Antibodies. Front. Microbio. 1:143. doi: 10.3389/fmicb.2010.00143
Received
29 October 2010
Accepted
18 December 2010
Published
07 January 2011
Volume
1 - 2010
Edited by
Anders Sjostedt, Umeå University, Sweden
Reviewed by
Barbara Mann, University of Virginia, USA; Jiri Stulik, University of Defence, Czech Republic
Copyright
© 2011 Kilmury and Twine.
This is an open-access article subject to an exclusive license agreement between the authors and the Frontiers Research Foundation, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited.
*Correspondence: Susan M. Twine, Institute for Biological Sciences, National Research Council Canada, 100 Sussex Drive, Ottawa, ON, Canada K1A 0R6. e-mail: susan.twine@nrc-cnrc.gc.ca
This article was submitted to Frontiers in Cellular and Infection Microbiology, a specialty of Frontiers in Microbiology.
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