Abstract
The HIV-1 Vpu protein enhances the release of viral particles from the cell-surface in a cell-type specific manner. In the absence of Vpu, nascent virions remain tethered to the cell-surface in restricted cell-types. Recently, the human host factor BST-2/CD317/tetherin was found to be responsible for the inhibition of virus release. It was also reported that HIV-1 Vpu can target human BST-2 but is unable to interfere with the function of murine or simian BST-2. We performed a gain-of-function study to determine which of the differences between human and rhesus BST-2 account for the differential sensitivity to Vpu. We transferred human BST-2 sequences into rhesus BST-2 and assessed the resulting chimeras for inhibition of HIV-1 virus release and sensitivity to Vpu. We found that rhesus BST-2 carrying the transmembrane (TM) domain of human BST-2 is susceptible to HIV-1 Vpu. Finally, a single-amino-acid change in the rhesus BST-2 TM domain was sufficient to confer Vpu sensitivity.
Introduction
Efficient virus release from HIV-infected cells is regulated by its Vpu gene product (Strebel et al., 1988; Terwilliger et al., 1989). However, the dependence on Vpu for efficient virus release is cell-type dependent (Sakai et al., 1995), leading investigators to predict the presence of a host restriction factor in Vpu-dependent cell-types (Varthakavi et al., 2003). Interestingly, IFN-treatment of Vpu-independent cell-types created a Vpu-dependent phenotype and inhibited not only the release of HIV-1 and related retroviruses but also affected secretion of unrelated viruses such as porcine endogenous retrovirus (PERV), Ebola, Lassa, Marburg, endogenous betaretrovirus of sheep (enJSRV), and KSHV (Neil et al., 2007; Jouvenet et al., ; Kaletsky et al., ; Sakuma et al., 2009b; Arnaud et al., ; Mattiuzzo et al., ). These observations suggested that the Vpu-sensitive restriction factor was not specific to HIV but belonged to a family of interferon-inducible genes with general antiviral properties. In the course of a quantitative membrane proteomics study, Vpu was found to reduce cellular expression of BST-2 in HeLa cells (Bartee et al., ). Subsequent reports identified BST-2 as the IFN-inducible, Vpu-sensitive factor responsible for the restriction of HIV-1 virus release (Neil et al., 2008; Van Damme et al., 2008). Indeed, BST-2 expression was cell-type dependent. BST-2 was constitutively expressed in Vpu-dependent cell-types such as HeLa, Jurkat, or CD4+ T cells but was undetectable in cell-types such as 293T or HT1080 cells and thus corresponded to cell-types known to depend on Vpu for efficient virus release (Neil et al., 2008; Van Damme et al., 2008). Importantly, BST-2 expression was induced by interferon treatment in 293T and HT1080 cells (Neil et al., 2007, 2008) and ectopic expression of BST-2 in 293T or HT1080 cells rendered these cells Vpu-dependent (Neil et al., 2008; Van Damme et al., 2008). Finally, siRNA silencing of BST-2 rendered virus release from HeLa cells Vpu-independent (Neil et al., 2008; Van Damme et al., 2008; Rong et al., 2009). Taken together these data provided strong evidence that BST-2 was indeed the host factor whose inhibitory effect on virus release was counteracted by Vpu.
BST-2 is a 30- to 36-kDa type II integral membrane protein, consisting of 180 amino acids (Ishikawa et al., ). The protein has an N-terminal transmembrane (TM) domain and is presumed to contain a C-terminal glycosyl-phosphatidylinositol (GPI) anchor (Kupzig et al., ; Figure 1A). BST-2 protein associates with lipid rafts at the cell-surface and on internal membranes, presumably the trans-Golgi network (TGN; Kupzig et al., ; Dube et al., ; Masuyama et al., ). X-ray crystallography of recombinant BST-2 demonstrated that residues 47–148 of the protein's ectodomain can fold into a 90-Å parallel coiled-coil structure (Hinz et al., ). In addition, small-angle X-ray scattering analyses predicted that the complete extracellular region of BST-2 adopts a long bent rodlike structure that separates the TM domain and GPI anchor by approximately 170 Å (Hinz et al., ).
Figure 1
Biochemical analyses demonstrated that BST-2 forms stable cysteine-linked dimers (Goto et al.,
Vpu and BST-2 are both integral membrane proteins albeit with different membrane topologies. BST-2 has a short N-terminal cytoplasmic domain with the bulk of the protein comprising the C-terminal ectodomain. Vpu, on the other hand, has virtually no ectodomain, and essentially consists of an N-terminal TM domain and a C-terminal cytoplasmic domain. Recent data suggest that the BST-2 TM domain is critical for interference by Vpu (Douglas et al.,
The current study aims at further analyzing the regions in BST-2 that define sensitivity to Vpu. Our approach was to transfer sequences from human BST-2 into the Vpu-resistant rhesus BST-2 to check function and Vpu sensitivity of the resulting chimera. Interestingly, mutation of a single residue in rhesus BST-2 (I48T) was sufficient to significantly increase sensitivity to Vpu. These results are consistent with a recent report demonstrating that mutation of T45 in human BST-2 (which is the equivalent of I48 in rhesus BST-2) was sufficient to render human BST-2 significantly less sensitive to Vpu (Gupta et al.,
Materials and Methods
Plasmids
The full length infectious HIV-1 molecular clone pNL4-3 and the Vpu deletion mutant pNL4-3/Udel have been described (Adachi et al.,
Antisera
Anti-BST-2 antiserum was elicited in rabbits using a bacterially expressed MS2-BST-2 fusion protein composed of amino acids 1–91 of the MS2 replicase (Strebel et al., 1986) and amino acids 41–162 of BST-2 generating a polyclonal antibody against the extracellular portion of BST-2. The antibody was found to react with human as well as rhesus BST-2. Polyclonal anti-Vpu serum (rabbit), directed against the hydrophilic C-terminal cytoplasmic domain of Vpu expressed in Escherichia coli (Maldarelli et al.,
Tissue culture and transfections
293T cells were propagated in Dulbecco's modified Eagles medium (DMEM) containing 10% fetal bovine serum (FBS). For transfection, cells were grown in 25 cm2 flasks to about 80% confluency. Cells were transfected using TransIT® LT-1 (Mirus, Madison, WI, USA) following the manufacturer's recommendations. A total of 5.2 μg of plasmid DNA per 25 cm2 flask was used. Total amounts of transfected DNA was kept constant in all samples of any given experiment by adding empty vector DNA as appropriate. Cells were harvested 24 h post-transfection.
Metabolic labeling and immunoprecipitations
Cells were transfected as described in the text with constant amounts of proviral vectors and increasing amounts of BST-2. Twenty-four hours later, cells were washed with PBS, scraped, and resuspended in 3 ml labeling media lacking methionine (Millipore Corp., Billerica, MA, USA). Cells were then incubated for 10 min at 37°C to deplete the endogenous methionine pool. Cells were then suspended in 400 μl of labeling medium together with 150 μCi of Express 35S35S protein labeling mix (Perkin Elmer, Shelton, CT, USA). Cells were labeled for 90 min at 37°C. Cells and virus-containing supernatants were then separated by centrifugation and processed separately for immunoprecipitation as follows: Cells were lysed with 150 μl of Triton lysis buffer (50 mM Tris pH 7.5, 150 mM NaCl, 0.5% Triton-X100) and incubated on ice for 5 min. After lysis, the cells were pelleted at 13,000×g for 2 min to remove insoluble material. The supernatants were used for immunoprecipitation. Virus-containing supernatants were treated with 150 μl of Triton lysis buffer to disrupt viral membranes. Cell and virus lysates were adjusted to 1.1 ml total volume with PBS containing BSA (final concentration of BSA: 0.1%) and incubated on a rotating wheel for 1 h at 4°C with protein A-Sepharose coupled with an HIV-positive patient serum. Beads were washed twice with wash buffer (50 mM Tris pH 7.4, 300 mM NaCl, 0.1% Triton X-100). Bound proteins were eluted by heating in sample buffer for 10 min at 95°C, separated by SDS-PAGE, and visualized by fluorography. Virus release was quantified by phospho-image analysis using a Fujifilm FLA7000 system.
Results
Cloning of rhesus BST-2
Pooled RNA from eight rhesus macaques was used for RT-PCR amplification of BST-2 and the resulting cDNA was cloned in untagged form into pcDNA3.1(−) as described in Section “Materials and Methods.” Four independent clones were sequenced and aligned against the GenBank entry of Macaca mulatta (GenBank NM_001161666). We also included in our alignment the sequences of three recently described rhesus macaque isolates (McNatt et al.,
HIV-1 Vpu counteracts human but not rhesus BST-2
To further understand the susceptibility of BST-2 to HIV-1 Vpu we compared the ability of human BST-2 and rhesus BST-2 to inhibit release of wt and Vpu-deficient (Udel) HIV-1. The human kidney cell line 293T, which does not express detectable levels of endogenous BST-2 and does not inhibit release of Vpu-deficient HIV-1 (Neil et al., 2008; Van Damme et al., 2008; Miyagi et al.,
Figure 2

HIV-1 Vpu counteracts human but not rhesus BST-2. (A) 293T cells were transfected with 5 μg of either pNL4-3 (wt) or pNL4-3/Udel (Udel) in the absence of BST-2 (lanes 1 and 5) or in the presence of 0.01 μg (lanes 2 and 6), 0.05 μg (lanes 3 and 7), or 0.2 μg (lanes 4 and 8) human (top panel) or rhesus (bottom panel) BST-2. Metabolic labeling was carried out as described in the text and cell lysates and cell-free supernatants were subjected to immunoprecipitation using an HIV-positive pooled human serum. Samples were separated by SDS-PAGE and proteins were visualized by fluorography. (B) Gag-specific cellular and viral proteins (Pr55 and p24) were quantified by phospho-image analysis. Solid circles represent samples expressing NL4-3; open circles represent NL4-3/Udel. The amount of p24 released in the absence of BST-2 relative to the total intra- and extracellular Gag protein was defined as 100%. Virus release in the presence of increasing amounts of BST-2 was calculated accordingly and the results were plotted as a function of transfected BST-2 DNA. (C) Expression of BST-2 was analyzed by immunoblotting. 293T cells were transfected with 0 (lanes 1 and 5), 0.01 (lanes 2 and 6), 0.05 (lanes 3 and 7), or 0.2 μg (lanes 4 and 8) of human BST-2 or rhesus BST-2 as in (A). Total amounts of transfected DNA were adjusted to 5 μg using empty vector DNA as appropriate. Whole cell lysates were prepared 24 h after transfection and subjected to immunoblot analysis using a BST-2 specific antibody as described in Figure 1B.
Rhesus BST-2 carrying the tm domain of human BST-2 is susceptible to HIV-1 Vpu
Several previous studies concluded that the BST-2 TM domain is critical for sensitivity to Vpu (Goffinet et al.,
Figure 3

Construction and analysis of rhesus–human BST-2 chimeras. (A) Schematic diagram of BST-2 chimeras. The black bar represents rhesus BST-2 and the gray bar indicates human BST-2. Regions from human BST-2 inserted into the rhesus BST-2 backbone are indicated as gray areas. Boundaries of cytoplasmic domain, TM domain, and ectodomain are marked by dashed lines. (B) Alignment of human and rhesus BST-2. Shown is an alignment of human BST-2 against rhesus BST-2 variant #4. Sequence identities are indicated as dots. Deletions are marked as dashes. Amino acid changes in rhesus BST-2 relative to human BST-2 are indicated in white on black background. Regions swapped in chimeras are boxed or marked by brackets. The TM domain is indicated as a shaded area. (C) Expression of BST-2 chimeras was analyzed by immunoblotting. 293T cells were transfected with 1 μg each of human BST-2, rhesus BST-2, or chimera 1–7 as indicated. Total amounts of transfected DNA were adjusted to 5 μg using empty vector DNA as appropriate. Whole cell lysates were prepared 24 h after transfection and subjected to immunoblot analysis using a BST-2 specific antibody as described in Figure 1B. A mock-transfected sample was included as a negative control (Ctrl).
Figure 4

Analysis of rhesus BST-2 carrying the TM domain of human BST-2 for susceptibility to HIV-1 Vpu. 293T cells were transfected with 5 μg of either pNL4-3 (wt) or pNL4-3/Udel (Udel) in the absence of BST-2 or in the presence of 0.01, 0.05, or 0.2 μg BST-2 chimeric constructs as described for Figure 2A. Metabolic labeling analysis was carried out as described for Figure 2A. Representative fluorographs are shown. Quantitation of virus release is shown on the right of each panel and was performed as described in the legend to Figure 2B. Error bars reflect SEM from two independent experiments.
A single-amino-acid change renders rhesus BST-2 partially susceptible to HIV-1 Vpu
The region of human BST-2 transferred into chimera 4 differs from rhesus BST-2 in six amino acid positions (Figure 5A). To analyze the importance of each of these residues to Vpu sensitivity, we generated additional chimeras containing single-amino-acid changes relative to the parental rhesus BST-2 variant. Each of the six amino acid positions was altered individually resulting in chimeras G33V, V36I, L39I, L43P, F46I, and I48T, respectively (Figure 5A). Expression of the variants was confirmed by immunoblotting (Figure 5B). Finally, we assessed the susceptibility of these mutants by metabolic labeling as shown for Figure 2 (Figure 6). Interestingly, mutation of I48T induced partial sensitivity of rhesus BST-2 to Vpu, especially at low levels of BST-2. In contrast, all other mutants remained fully Vpu-resistant. Thus, mutation of the rhesus BST-2 TM domain at position 48 from isoleucine to threonine was sufficient to render rhesus BST-2 partially susceptible to Vpu.
Figure 5

Construction of BST-2 point mutants. (A) Sequence alignment of BST-2 TM domain region encompassed by chimera 4. Chimera 4, which is Vpu-sensitive, contains six amino acid differences with respect to rhesus BST-2. Each of the six positions was changed individually to the corresponding human sequence by PCR-based site-directed mutagenesis. Dots represent sequence identities. Amino acid positions at the top refer to rhesus BST-2. Numbers listed at the bottom refer to the corresponding human BST-2 amino acid positions. (B) Expression of BST-2 point mutants was verified by immunoblotting as described for Figure 3C.
Figure 6

A single-amino-acid change renders rhesus BST-2 partially susceptible to HIV-1 Vpu. Metabolic labeling of viral proteins followed by immunoprecipitation of cell lysates and viral supernatants in the presence of BST-2 point mutants was performed as described for Figure 2A. Representative fluorographs are shown. Quantitation of virus release is shown on the right of each panel and was performed as described in the legend to Figure 2B. Error bars reflect SEM from two independent experiments.
Discussion
CD4 degradation and regulation of virus release, which are the two best-studied functions of Vpu, involve distinct structural domains of Vpu (Schubert et al., 1996). The ability to degrade CD4 is critically dependent on Vpu's cytoplasmic domain, and in particular a di-phosphoserine motif, which is necessary for the assembly of an ubiquitin ligase complex that ultimately marks CD4 for degradation by the cellular proteasome machinery (reviewed in Strebel, 2007; Andrew and Strebel,
On the other hand, the structural integrity of the Vpu TM domain appears to be critical for the enhancement of virus release (Schubert et al., 1996; Paul et al., 1998) and for the interference of Vpu with BST-2 function. Because of the importance of the Vpu TM domain for regulating virus release, it was not particularly surprising that the TM domain of BST-2 was equally important for inhibition by Vpu. Unlike the Vpu–CD4 interaction, however, the sequence of the BST-2 domain is critical for functional interaction with Vpu. The data presented here supports two previous studies showing that transfer of the TM domain of human BST-2 to normally Vpu-insensitive non-human BST-2 variants confers partial or full Vpu sensitivity (McNatt et al.,
Analysis of the TM domains of human and rhesus BST-2 revealed a number of differences including a deletion of two amino acids near the N-terminus of the rhesus BST-2 TM domain as well as six single-amino-acid differences in the C-terminal half of the TM domain (Figure 5A). The importance of these differences in the TM domains of human and rhesus BST-2 for Vpu sensitivity has been addressed in several previous studies (Gupta et al.,
Taken together our data demonstrate that transfer of individual residues (i.e., I48T in Figure 6) or parts of the human BST-2 TM domain (i.e., chimera 4 in Figure 4) can confer partial Vpu sensitivity to rhesus BST-2. Thus, the BST-2 TM domain contains the determinants responsible for the species-specific sensitivity to Vpu. How the interaction of Vpu and BST-2 leads to the functional inactivation of BST-2 remains to be investigated. Co-immunoprecipitation and bimolecular fluorescence complementation analyses suggest a direct physical interaction of Vpu and BST-2 (Rong et al., 2009; Dube et al.,
Statements
Acknowledgments
We would like to thank Masashi Shingai for helpful discussion and for generously providing pooled rhesus macaque RNA for cloning of rhesus BST-2. We are grateful to Eri Miyagi, Amy Andrew, Robert C. Walker, Jr., and Sarah Welbourn for valuable suggestions and for critical comments on the manuscript. Thanks also to the members of the LMM core facility for sequence analysis and oligonucleotide synthesis. Pooled HIV-1 positive patient serum was obtained from the AIDS Research and Reference Reagent Program, Division of AIDS, NIAID, NIH: HIV-IG from NABI and NHLBI (Cat # 3957). This work was supported in part by a Grant from the NIH Intramural AIDS Targeted Antiviral Program to Klaus Strebel and by the Intramural Research Program of the NIH, NIAID.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
BST-2, tetherin, Vpu, restriction factor, HIV-1
Citation
Yoshida T, Kao S and Strebel K (2011) Identification of Residues in the BST-2 TM Domain Important for Antagonism by HIV-1 Vpu Using a Gain-of-Function Approach. Front. Microbio. 2:35. doi: 10.3389/fmicb.2011.00035
Received
09 November 2010
Accepted
09 February 2011
Published
18 February 2011
Volume
2 - 2011
Edited by
Tom C. Hobman, University of British Columbia, Canada
Reviewed by
Keith Fowke, University of Manitoba, Canada; Carolyn Machamer, Johns Hopkins University School of Medicine, USA
Copyright
© 2011 Yoshida, Kao and Strebel.
This is an open-access article subject to an exclusive license agreement between the authors and Frontiers Media SA, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are credited.
*Correspondence: Klaus Strebel, Viral Biochemistry Section, Laboratory of Molecular Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Building 4, Room 310, 4 Center Drive MSC 0460, Bethesda, MD 20892-0460, USA. e-mail: kstrebel@nih.gov
Disclaimer
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