Abstract
Pseudomonas aeruginosa is a Gram-negative bacterium causing diseases in plants, animals, and humans, and its drug resistance is a major concern in medical care. Biofilms play an important role in P. aeruginosa drug resistance. Three factors are most important to induce biofilm: quorum sensing (QS), bis-(3′-5′)-cyclic diguanosine monophosphate (c-di-GMP), and small RNAs (sRNAs). P. aeruginosa has its own specific QS system (PQS) besides two common QS systems, LasI–LasR and RhlI–RhlR, in bacteria. PQS is interesting not only because there is a negative regulation from RhlR to pqsR but also because the null mutation in PQS leads to a reduced biofilm formation. Furthermore, P. aeruginosa dispersed cells have physiological features that are distinct between the planktonic cells and biofilm cells. In response to a low concentration of c-di-GMP, P. aeruginosa cells can disperse from the biofilms to become planktonic cells. These raise an interesting hypothesis of whether biofilm can be reversed through the QS mechanism in P. aeruginosa. Although a single factor is certainly not sufficient to prevent the biofilm formation, it necessarily explores such possibility. In this hypothesis, the literature is analyzed to determine the negative regulation pathways, and then the transcriptomic data are analyzed to determine whether this hypothesis is workable or not. Unexpectedly, the transcriptomic data reveal a negative regulation between lasI and psqR. Also, the individual cases from transcriptomic data demonstrate the negative regulations of PQS with laslI, laslR, rhlI, and rhlR under different experiments. Based on our analyses, possible strategies to reverse biofilm formation are proposed and their clinic implications are addressed.
Introduction
Pseudomonas aeruginosa is a Gram-negative bacterium living in soil and water. Being an opportunistic pathogen, P. aeruginosa can cause the bacterial soft rot in plants (; Walker et al., 2004), and diseases in animals (; Vingopoulou et al., 2018) and humans, including eye (Willcox, 2007), burn wound (), acute and chronic pulmonary infections, where cystic fibrosis is associated with substantial morbidity and mortality (; ).
Therefore, P. aeruginosa is a major concern in medical care because of its drug resistance against the traditional antibiotic therapy (; ), that is particularly problematic for immunocompromised patients and the elderly in nosocomial environments (Xia et al., 2016). P. aeruginosa brings about its drug resistance through hydrolyzation of antibiotics with carbapenemases or extended-spectrum β-lactamases or ApmR (Vatcheva-Dobrevska et al., 2013; ; ), the low permeability of outer membrane (; Zgurskaya et al., 2015), the multidrug efflux (; ), etc. Also, the biofilm is an important player in P. aeruginosa drug resistance () because the dense extracellular matrix of biofilms reduces the efficacy of detergents and antibiotics (). Such resistance could be increased a thousand times in some cases ().
The dispersal of cells from the biofilm colony is a crucial and unique stage for biofilms to spread and colonize new surfaces () and for the transition of dispersed cells from the biofilm to the planktonic growth phase. Could it be possible to stop the biofilm from happening, or reserve the biofilm back to the planktonic phenotype, or eradicate the biofilm in bacteria?
Theoretically, this hypothesis could be possible for P. aeruginosa, because its dispersed cells have physiological features that are distinct between the planktonic and the biofilm cells (, ). In response to a low concentration of c-di-GMP, P. aeruginosa cells can disperse from the biofilm to become the planktonic cells. The drug resistance is not stronger in the biofilm cells than in the stationary-phase planktonic cells, but is stronger than in the logarithmic-phase planktonic cells (). Additionally, P. aeruginosa produces cis-2-decenoic acid, which is a fatty acid messenger and induces dispersion and inhibits the growth of biofilm colonies (). Furthermore, nitric oxide triggers the dispersal of biofilms in P. aeruginosa (), leading to the treatment of chronic infections in cystic fibrosis ().
The formation of biofilm is induced and regulated by numerous genes and environmental factors (), of which three are most important. The first one is the quorum sensing (QS), because QS controls about 10% genes in P. aeruginosa (Wagner et al., 2003), including many genes that are actively involved in the biofilm development and dispersal, although they are unlikely to be involved in the attachment and the initial of biofilm growth (). The second one is the bis-(3′-5′)-cyclic diguanosine monophosphate (c-di-GMP), because its signaling network is the most complex secondary signaling system in bacteria () and has the responsibility to decide whether bacteria adopt either planktonic or biofilm phenotype (). The third one is the small RNAs (sRNAs) although their role in biofilm is yet to be clear (Wolska et al., 2016).
Indeed, QS has a close relationship with biofilm (Wolska et al., 2016). It controls the synthesis of rhamnolipids that maintain the channels () for distributing nutrient and oxygen and removing waste products in mushroom-shaped structures (). The channels can help in the release of a large amount of eDNA due to the autolysis of subpopulation of bacteria () at the late stage of biofilm development. Various components of the biofilm matrix, such as extracellular DNA (eDNA), exopolysaccharides (EPS) and glucan, are closely related to biofilm matrix dynamics and bacterial virulence (). Also, there are other virulence factors, which play an important role in the QS regulation and biofilm formation. For example, pyocyanin promotes eDNA release and facilitates the biofilm formation ().
It is worth reviewing literature to explore whether the biofilm is theoretically reversible through QS in P. aeruginosa, not only because P. aeruginosa is a causal organism of important health ailments but also because P. aeruginosa is a commonly used biofilm model organism (). More importantly, the synthesis of rhamnolipid in P. aeruginosa occurs at its late-exponential and stationary phases (). Rhamnolipid helps bacteria to utilize long-chain fatty acids as sources of carbon () so it plays an important role in the biofilm formation (; ; ).
Reversing of biofilms could be plausible because QS is a target in many different circumstances such as attenuate virulence (), bacterial metabolism (), bacterial response to antibiotics (), and therapy (). Besides, the mechanism to form biofilms in P. aeruginosa is definitely different from other bacteria such as P. putida, P. fluorescens, Staphylococcus aureus, and Vibrio cholera (Wolska et al., 2016).
Needless to say, the reversing of biofilms is related to multiple factors, so a single factor such as QS could have very limited effects. However, we should theoretically explore those possibilities one by one at initial stage in view of the importance of biofilms in clinical meanings.
Positive and Negative Regulations in Qs
If we wish to reverse the biofilm through the QS, we need to find out whether the QS is reversible or not. So far overwhelmed evidence suggests that the QS is a positive feedback system, which implies that it is impossible to stop the QS once the QS is initiated. However, we have yet to know whether the ending point of QS is the biofilm formation? If this is the case, the stop of QS will either reverse the biofilm or stop the biofilm formation. To answer this issue, it is necessary to find out the negative regulation (feedback) in QS.
The QS is a cell-to-cell communication by means of production, detection, and response of chemical compounds, autoinducers, and thus the QS changes an individual or a population behavior upon the concentration of autoinducers, which are subject to the cell density ().
Pseudomonas aeruginosa has three QS systems. (i) LasI–LasR that is related to the synthesis and the use of N-(3-oxo-dodecanoyl)-L-homoserine lactone (3OC12-HL) (; ), whose concentration is ranged from 1 to 5 μM (, ) (brown color items in Figure 1). (ii) RhlI-RhlR that is related to the synthesis and the use of N-(butyryl)-L-homoserine lactone (BHL) (), whose concentration is about 10 μM () (yellow color items in Figure 1). (iii) Pseudomonas quinolone signal (PQS)-based QS, PqsABCDH-PqsR that is related to the synthesis and the use of 2-heptyl-3-hydroxy-4-quinolone (HHQ) (; ), whose concentration is about 6 μM () (green color items in Figure 1). The first two QS systems essentially are N-acylated homoserine lactone (AHL)-based QS systems () and exist in many bacteria.
FIGURE 1
The sophisticated QS systems in P. aeruginosa are described as follows. (i) LasI produces 3OC12-HL, which acts on LasR (; ) (the upward brown arrow from lasR to LasR on the left side of Figure 1). (ii) LasR acts on aprA (), lasA (Toder et al., 1991) and toxA (; ; ) (the downward brown arrow on the far left side in Figure 1). (iii) Both LasI and LasR act on lasB (, ) through 3OC12-HL, whose half-maximal expression needs 1.0 nM () (brown symbols on the left side of Figure 1). (iv) RhlI produces BHL, which acts on RhlR (, ) (the bright yellow arrow on the right side of Figure 1). (v) RhlR acts on pyocyanin synthesis (; ; ) (the long yellow arrow on the middle of Figure 1), lasA () (the yellow arrow on the middle left of Figure 1), and rpoS () (the yellow arrow on the upper right corner of Figure 1). (vi) Both RhlI and RhlR act on lasB through BHL () (the yellow arrow on the upper right part of Figure 1), and rhlABR () (the small yellow arrow on the middle of Figure 1), where rhlAB encodes rhamnosyltransferase () (two yellow arrows on the upper middle part of Figure 1) together with rhlR positively regulate rhamnolipid synthesis () (the yellow arrow on the middle upper part of Figure 1). (vii) LasR and RhlR positively regulate the synthesis of hydrogen cyanide () (the downward yellow arrow on the lower middle part of Figure 1).
Still, Figure 1 displays the effects of PQS-based QS on their targets. (i) PqsABCDH produces HHQ requiring phnA and phnB through anthranilate () (the green curly lines on the middle right part of Figure 1), then HHQ acts on PqsR (), regulating the production of elastase, PA-IL lectin, pyocyanin and rhamnolipid (; ; ; ) (the green lines from the lower right corner in Figure 1). (ii) PqsE positively acts on biosynthesis of various virulent factors, which is independent of HHQ or any compounds produced related to the function of pqsABCDE operon although the expression of pqsE and PqsE are controlled by HHQ and PqsR () (dashed green line on the lower right part of Figure 1). (iii) PqsR–HHQ is involved in iron homeostasis (; ) (the lowest green line in Figure 1).
A positive feedback can be found in each of three QS systems. (i) The first positive feedback goes from LasR–3OC12-HL to LasI through lasI, whose half-maximal expression needs 0.1 nM 3OC12-HL () (light gray ellipse on the left part of Figure 1). (ii) The second positive feedback goes from RhlR–HL to RhlI through rhlI () (light gray ellipse on the upper right part of Figure 1). (iii) The third positive feedback goes from PqsR–HHQ to pqsABCDE and phnAB operons (; ; Wade et al., 2005) (light gray ellipse on the middle right part of Figure 1).
The relationship among three QS systems in P. aeruginosa is positive in the following regulations. (i) LasR positively regulates HHQ through the complex LasR–3OC12-HL on pqsH (; ) (brown arrow on the right middle part of Figure 1). (ii) RhlR positively regulates HHQ through PqsE () (two arrow-blue lines on the middle right part of Figure 1). (iii) LasR positively regulates rhlR through the complex LasR–3OC12-HL (; ) and rhlI () (the brown horizontal line with two arrows in Figure 1). (iv) HHQ strongly acts on rhlI with BHL (two arrow-blue lines in middle right part of Figure 1) but weakly acts on lasR and rhlR (). (v) RhlR positively regulates PqsE, whose overexpression leads to a high rhamnolipid production () (the yellow arrow on the right middle part of Figure 1). (vi) PqsE changes the function of RhlR rather than that of BHL () (two arrow-blue lines on the middle right part of Figure 1). (vii) LasR/3OC12-HL controls pqsR () (the end arrow of brown horizontal line in Figure 1).
In fact, there is a negative regulation among QS systems, namely, RhlR negatively regulates pqsR in P. aeruginosa (; Wade et al., 2005), or RhlR and BHL together negatively affect the production of HHQ and other quinolones through pqsR to pqsABCDE operon transcription (; ; Xiao et al., 2006b) (the yellow arrow from RhlR–BHL to the yellow horizontal line to the right end with downward dash end in Figure 1). On the other hand, a negatively regulatory pathway is not so sure (the yellow end line highlighted with a red star on the middle of Figure 1).
Can This Negative Regulation Work?
As PQS-based QS is so particularly relevant to Pseudomonas, its significance should not be ignored. This is because the null mutation in PQS leads to a reduced biofilm formation and decreased the productions of pyocyanin, elastase, PA-IL lectin and rhamnolipids (, ; ; ). Indeed, PQS directly or indirectly controls 92 or 143 genes as shown in two transcriptomic analyses (, ). By contrast, the other two QS systems together influence the expression in 200-plus genes (Whiteley et al., 1999).
For PQS, it does not reach its maximal production until the late stationary phase of growth (). This implies that HHQ is not involved in sensing the cell density, so the observation that the QS response is not reversed for small decreases in population density in P. aeruginosa (Williams and Camara, 2009) is not the failure of PQS. An important time interval appears between QS systems, i.e., BHL is produced during the log phase of growth but HHQ is produced during late time in the stationary phase of growth (), so the positive regulation of HHQ on rhlI is more likely to be related to the second round of RhlI cycle. If HHQ would not function at this time interval, perhaps the QS would stop.
Another promising point is that the phenazine production requires HHQ in P. aeruginosa (; ). In fact, phenazines may have a significant ecological impact on the biofilm formation in P. aeruginosa as well as other bacteria persisting in biofilms mixed with P. aeruginosa. Through affecting H2O2 generation, phenazines bring about the lysis of competing bacterial cells in mixed biofilms and the subsequent eDNA release ().
Perhaps, one of the best ways to explore the possibility of whether the QS is reversible through PQS in P. aeruginosa is to analyze the transcriptomic data in order to find some common patterns. Accordingly, we analyzed the transcriptomic data on Affymetrix P. aeruginosa array with 5549 P. aeruginosa genes, platform GPL84, from Gene Expression Omnibus (GEO) (; ), including all the data in 104 publications (Supplementary Information) with 274 datasets. Each dataset represents the response to a specifically experimental condition. With these all available transcriptomic data, we wish to determine if PQS could be depressed under different experimental conditions.
Table 1 shows correlation coefficients between any two genes of three QS systems. The rationale is that there are up-regulations and down-regulations in transcriptomic data. The correlation between two genes, which are both up-regulated or both down-regulated, would suggest a positive regulation with a positive correlation coefficient. By contrast, the correlation between two genes, which are regulated oppositely, would suggest a negative regulation with a negative correlation coefficient.
TABLE 1
| Gene | lasI | lasR | rhlI | rhlR | rhl | pqsA | pqsB | pqsC | pqsD | pqsE | pqsH | pqsR/mvfR | |
| PA1432 | PA1430 | PA3476 | PA3477 | PA3861 | PA0996 | PA0997 | PA0998 | PA0999 | PA1000 | PA2587 | PA1003 | ||
| lasI | PA1432 | 1 | 0.62 | 0.37 | 0.37 | 0.16 | 0.06 | 0.04 | −0.02 | −0.01 | 0.01 | 0.17 | −0.38 |
| lasR | PA1430 | 1 | 0.51 | 0.33 | 0.52 | 0.15 | 0.12 | 0.11 | 0.13 | 0.10 | 0.14 | −0.03 | |
| rhlI | PA3476 | 1 | 0.89 | 0.29 | 0.73 | 0.76 | 0.58 | 0.67 | 0.58 | 0.20 | 0.17 | ||
| rhlR | PA3477 | 1 | 0.13 | 0.84 | 0.88 | 0.66 | 0.76 | 0.68 | 0.05 | −0.04 | |||
| rhl | PA3861 | 1 | 0.15 | 0.14 | 0.19 | 0.22 | 0.14 | 0.16 | 0.24 | ||||
| pqsA | PA0996 | 1 | 0.97 | 0.85 | 0.95 | 0.82 | −0.05 | 0.25 | |||||
| pqsB | PA0997 | 1 | 0.89 | 0.96 | 0.84 | −0.03 | 0.24 | ||||||
| pqsC | PA0998 | 1 | 0.90 | 0.87 | −0.03 | 0.28 | |||||||
| pqsD | PA0999 | 1 | 0.81 | 0.00 | 0.30 | ||||||||
| pqsE | PA1000 | 1 | −0.07 | 0.23 | |||||||||
| pqsH | PA2587 | 1 | 0.27 | ||||||||||
| pqsR/mvfR | PA1003 | 1 |
Correlation coefficient between any two genes of three QS systems using transcriptomic data.
Based upon the correlations within a single QS system in Table 1, the correlations between lasI and lasR, and between rhlI and rhlR confirm their auto-induction relationships (; ) within each QS system. No negative correlation is found between the QS genes in the same QS system. As pqsR is named mvfR in gene bank, the auto-induction relationship with the rest of PQS genes are not very evident as the paired correlations between pdsA, pqsB, pqsC, pqsD, pqsE, but all paired correlations suggest a positive regulation within PQS system (). Based upon the correlations between two QS systems in Table 1, the results conform there is a positive regulation between lasI–lasR and rhlI–rhlR, and between rhlI-rhlR and pqsABCDE. However, an undocumented negative regulation is revealed between lasI and pqsR/mvfR using these transcriptomic data. Could it be a potential pathway to reverse the biofilm formation?
Furthermore, the responses of QS systems are analyzed under different transcriptomic experiments, and classified as down-regulation, down-regulation/no response, no response, no response/up-regulation, up-regulation and mixed responses. Figure 2 shows such analysis according to 94 transcriptomic experiments. No response on three QS systems was found in 30 transcriptomic experiments (the intersection of three circles in Figure 2). Both LasI-LasR and RhlI-RhlR have the same response in 29 transcriptomic experiments (the intersection of two upper circles in Figure 2), suggesting a good cooperation between them. By the contrast, only five and six transcriptomic experiments show the same response for PQS with LasI-LasR and RhlI-RhlR (the intersection of two upper and lower circles in Figure 2), respectively. The same response in both LasI-LasR and PQS systems includes no response in GSE24784, GSE26142, GSE35248, and GSE39044, and no response/up-regulation in GSE22684, indicating few positive impact of LasI-LasR on PQS. The same response in both RhlI-RhlR and PQS systems includes: down-regulation in GSE9255; down-regulation/no response in GSE5887; no response in GSE17179 and GSE61925; and no response/up-regulation in GSE65882 and GSE7402. Thus, the results from Venn diagram indicate that RhlI-RhlR has weak impacts on PQS. Figure 2 demonstrates the responses of 30, 29, and 53 transcriptomic experiments solely in LasI-LasR, RhlI-RhlR, and PQS, respectively, of which their response ranges from down-regulation to mixed response.
FIGURE 2
Finally, the negative regulation between different QS systems is found in four transcriptomic experiments (GSE4152, GSE8408, GSE6122, and GSE17296). In the study on Australian clonal strain (AES-1) in patients with cystic fibrosis in GSE6122 (), lasI, rhlI, and rhlR were down-regulated while pqsA, pqsB, pqsC, pqsD, and pqsE were up-regulated. This highlights the PQS remarkable effect on the biofilm formation and enhanced infectivity. Another three transcriptomic experiments show that pqsA, pqsB, pqsC, pqsD, and pqsE were down-regulated whereas rhlI and rhlR were up-regulated (Teitzel et al., 2006; Tralau et al., 2007; ), of which lasI was up-regulated in copper-stressed (Teitzel et al., 2006), and both lasI and lasR were up-regulated in sulfate limitation (Tralau et al., 2007). Therefore, RhlI-RhlR does have a negative regulation on PQS (; Wade et al., 2005; Xiao et al., 2006a).
Conclusion
In this hypothesis, we apply the transcriptomic data to verify the hypothesis of whether the biofilm can be reversed in P. aeruginosa through QS because there are negative regulations between PQS and RhlI-RhlR. Interestingly, the transcriptomic data from 104 publications reveal a negative regulation between lasI and psqR, rendering a support to the hypothesis. Individual cases from transcriptomic data under different experiments demonstrate the negative regulations of PQS with laslI, laslR, rhlI, and rhlR.
In general, the relationships among different QS systems reveal positive regulations, which act together to promote the biofilm formation. However, the present analyses from literature and transcriptomic data provide the evidence that both LaslI-LaslR and RhlI-RhlR systems have negatively regulatory effects on PQS system. This is very important because these negative regulations lay the foundation for the biofilm reversion through QS. Although the exact pathways are still not fully discovered, the N-acylated homoserine lactone (AHL)-based QS systems can influence PQS-based QS system by inhibiting the expression of pqsABCDE operon and pqsR, resulting in the reduction of HHQ and PqsR synthesis. Consequently, the low concentration of PQS related products cannot maintain the biofilm, leading to its reversion. On the other hand, the down-regulated PQS-based QS system cannot perform well their function of positive regulations on LaslI-LaslR and RhlI-RhlR systems, which will further affect the biofilm formation, especially in the second round of RhlI cycle. Surely, there are other factors that play roles in the formation of drug-resistant multicellular biofilms, such as c-di-GMP. As mentioned in section “Introduction,” this signal can govern bacterial cells to adopt either planktonic phenotype or biofilm formation (). Recent study demonstrates that high levels of cAMP lead to the decrease of c-di-GMP content, which inhibits the biofilm formation in P. aeruginosa ().
In clinic therapeutics for infectious diseases, antibiotic resistance has been spreading widely and rapidly, which becomes a major challenge for modern medicine. The strategy of interfering the biofilm formation is effective through bacterial cell-to-cell communication, especially with QS system (). More recently, QS inhibitors are drawing great attention in blocking the pathogenicity from P. aeruginosa (; ). The transcriptional regulator PqsR becomes an attractive object and is considered to be one of the most appropriate targets. Currently, QS regulation mechanism in P. aeruginosa is mainly related to positive and negative regulation between QS systems. Clearly, exploration of regulation beyond QS should get attention in future.
Statements
Data availability statement
All datasets generated or analyzed for this study are included in the manuscript and the Supplementary Files.
Author contributions
GW designed the work. Both authors prepared and approved the manuscript.
Funding
This work was partly supported by the National Natural Science Foundation of China (Nos. 31460296 and 31560315) and the Key Project of Guangxi Scientific Research and Technology Development Plan (AB17190534).
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fmicb.2019.01582/full#supplementary-material
References
1
AghazadehM.HojabriZ.MahdianR.NahaeiM. R.RahmatiM.HojabriT.et al (2014). Role of efflux pumps: MexAB-OprM and MexXY(-OprA), AmpC cephalosporinase and OprD porin in non-metallo-β-lactamase producing Pseudomonas aeruginosa isolated from cystic fibrosis and burn patients.Infect. Genet. Evol.24187–192. 10.1016/j.meegid.2014.03.018
2
Allesen-HolmM.BarkenK. B.YangL.KlausenM.WebbJ. S.KjellebergS.et al (2006). A characterization of DNA release in Pseudomonas aeruginosa cultures and biofilms.Mol. Microbiol.591114–1128. 10.1111/j.1365-2958.2005.05008.x
3
AlmbladH.RybtkeM.HendianiS.AndersenJ. B.GivskovM.Tolker-NielsenT. (2019). High levels of cAMP inhibit Pseudomonas aeruginosa biofilm formation through reduction of the c-di-GMP content.Microbiology165324–333. 10.1099/mic.0.000772
4
BarraudN.HassettD. J.HwangS. H.RiceS. A.KjellebergS.WebbJ. S. (2006). Involvement of nitric oxide in biofilm dispersal of Pseudomonas aeruginosa.J. Bacteriol.1887344–7353. 10.1128/jb.00779-06
5
BarrettT.WilhiteS. E.LedouxP.EvangelistaC.KimI. F.TomashevskyM.et al (2013). NCBI GEO: archive for functional genomics data sets–update.Nucleic Acids Res.41D991–D995. 10.1093/nar/gks1193
6
BredenbruchF.GeffersR.NimtzM.BuerJ.HausslerS. (2006). The Pseudomonas aeruginosa quinolone signal (PQS) has an iron-chelating activity.Environ. Microbiol.881318–81329.
7
BrintJ. M.OhmanD. E. (1995). Synthesis of multiple exoproducts in Pseudomonas aeruginosa is under the control of RhlR-RhlI, another set of regulators in strain PAO1 with homology to the autoinducer-responsive LuxR-LuxI family.J. Bacteriol.1777155–7163. 10.1128/jb.177.24.7155-7163.1995
8
BuhlM.PeterS.WillmannM. (2015). Prevalence and risk factors associated with colonization and infection of extensively drug-resistant Pseudomonas aeruginosa: a systematic review.Expert. Rev. Anti. Infect. Ther.131159–1170. 10.1586/14787210.2015.1064310
9
CalvertM. B.JumdeV. R.TitzA. (2018). Pathoblockers or antivirulence drugs as a new option for the treatment of bacterial infections.Beilstein J. Org. Chem.142607–2617. 10.3762/bjoc.14.239
10
CamilliA.BasslerB. L. (2006). Bacterial small-molecule signaling pathways.Science3111113–1116. 10.1126/science.1121357
11
CaoH.KrishnanG.GoumnerovB.TsongalisJ.TompkinsR.RahmeL. G. (2001). A quorum sensing-associated virulence gene of Pseudomonas aeruginosa encodes a LysR-like transcription regulator with a unique self-regulatory mechanism.Proc. Natl. Acad. Sci. U.S.A.9814613–14618. 10.1073/pnas.251465298
12
ChanK. G.LiuY. C.ChangC. Y. (2015). Inhibiting N-acyl-homoserine lactone synthesis and quenching Pseudomonas quinolone quorum sensing to attenuate virulence.Front. Microbiol.6:1173. 10.3389/fmicb.2015.01173
13
ChuaS. L.HultqvistL. D.YuanM.RybtkeM.NielsenT. E.GivskovM.et al (2015). In vitro and in vivo generation and characterization of Pseudomonas aeruginosa biofilm-dispersed cells via c-di-GMP manipulation.Nat. Protoc.101165–1180. 10.1038/nprot.2015.067
14
ChuaS. L.LiuY.YamJ. K.ChenY.VejborgR. M.TanB. G.et al (2014). Dispersed cells represent a distinct stage in the transition from bacterial biofilm to planktonic lifestyles.Nat. Commun.5:4462. 10.1038/ncomms5462
15
ChurchD.ElsayedS.ReidO.WinstonB.LindsayR. (2006). Burn wound infections.Clin. Microbiol. Rev.19403–434.
16
DasT.ManefieldM. (2013). Phenazine production enhances extracellular DNA release via hydrogen peroxide generation in Pseudomonas aeruginosa.Commun. Integr. Biol.6:e23570. 10.4161/cib.23570
17
DaveyM. E.O’TooleG. A. (2000). Microbial biofilms: from ecology to molecular genetics.Microbiol. Mol. Biol. Rev.64847–867. 10.1128/mmbr.64.4.847-867.2000
18
DaviesD. G.MarquesC. N. (2009). A fatty acid messenger is responsible for inducing dispersion in microbial biofilms.J. Bacteriol.1911393–1403. 10.1128/JB.01214-08
19
DaviesD. G.ParsekM. R.PearsonJ. P.IglewskiB. H.CostertonJ. W.GreenbergE. P. (1998). The involvement of cell-to-cell signals in the development of a bacterial biofilm.Science280295–298. 10.1126/science.280.5361.295
20
DezielE.GopalanS.TampakakiA. P.LepineF.PadfieldK. E.SaucierM.et al (2005). The contribution of MvfR to Pseudomonas aeruginosa pathogenesis and quorum sensing circuitry regulation: multiple quorum sensing-regulated genes are modulated without affecting lasRI, rhlRI or the production of N-acyl-l-homoserine lactones.Mol. Microbiol.55998–1014. 10.1111/j.1365-2958.2004.04448.x
21
DiggleS. P.WinzerK.ChhabraS. R.WorrallK. E.CamaraM.WilliamsP. (2003). The Pseudomonas aeruginosa quinolone signal molecule overcomes the cell density-dependency of the quorum sensing hierarchy, regulates rhl-dependent genes at the onset of stationary phase and can be produced in the absence of LasR.Mol. Microbiol.5029–43. 10.1046/j.1365-2958.2003.03672.x
22
EdgarR.DomrachevM.LashA. E. (2002). Gene expression omnibus: NCBI gene expression and hybridization array data repository.Nucleic Acids Res.30207–210. 10.1093/nar/30.1.207
23
ElbornJ. S. (2016). Cystic fibrosis.Lancet3882519–2531. 10.1016/S0140-6736(16)00576-6
24
ErenE.ParkinJ.AdelanwaA.ChenekeB.MovileanuL.KhalidS.et al (2013). Toward understanding the outer membrane uptake of small molecules by Pseudomonas aeruginosa.J. Biol. Chem.28812042–12053. 10.1074/jbc.M113.463570
25
FarrowJ. M.IIISundZ. M.EllisonM. L.WadeD. S.ColemanJ. P.PesciE. C. (2008). PqsE functions independently of PqsR-Pseudomonas quinolone signal and enhances the rhl quorum-sensing system.J. Bacteriol.1907043–7051. 10.1128/JB.00753-08
26
FazliM.AlmbladH.RybtkeM. L.GivskovM.EberlL.Tolker-NielsenT. (2014). Regulation of biofilm formation in Pseudomonas and Burkholderia species.Environ. Microbiol.161961–1981. 10.1111/1462-2920.12448
27
FerrisR. A.McCueP. M.BorleeG. I.GlapaK. E.MartinK. H.MangaleaM. R.et al (2017). Model of chronic equine endometritis involving a Pseudomonas aeruginosa biofilm.Infect. Immun.85:e00332-17. 10.1128/IAI.00332-17
28
FisherJ. F.MobasheryS. (2014). The sentinel role of peptidoglycan recycling in the β-lactam resistance of the Gram-negative Enterobacteriaceae and Pseudomonas aeruginosa.Bioorg. Chem.5641–48. 10.1016/j.bioorg.2014.05.011
29
FuquaW. C.WinansS. C.GreenbergE. P. (1994). Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators.J. Bacteriol.176269–275. 10.1128/jb.176.2.269-275.1994
30
GallagherL. A.McKnightS. L.KuznetsovaM. S.PesciE. C.ManoilC. (2002). Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.J. Bacteriol.1846472–6480. 10.1128/jb.184.23.6472-6480.2002
31
GambelloM. J.IglewskiB. H. (1991). Cloning and characterization of the Pseudomonas aeruginosa lasR gene, a transcriptional activator of elastase expression.J. Bacteriol.1733000–3009. 10.1128/jb.173.9.3000-3009.1991
32
GambelloM. J.KayeS.IglewskiB. H. (1993). LasR of Pseudomonas aeruginosa is a transcriptional activator of the alkaline protease gene (apr) and an enhancer of exotoxin A expression.Infect. Immun.611180–1184.
33
GooE.AnJ. H.KangY.HwangI. (2015). Control of bacterial metabolism by quorum sensing.Trends Microbiol.23567–576. 10.1016/j.tim.2015.05.007
34
Guerra-SantosL.KäppeliO.FiechterA. (1986). Dependence of Pseudomonas aeruginosa continuous culture biosurfactant production on nutritional and environmental factors.Appl. Microbiol. Biotechnol.24443–448.
35
Hakemi ValaM.HallajzadehM.HashemiA.GoudarziH.TarhaniM.Sattarzadeh TabriziM.et al (2014). Detection of Ambler class A, B and D ß-lactamases among Pseudomonas aeruginosa and Acinetobacter baumannii clinical isolates from burn patients.Ann. Burns Fire Disasters278–13.
36
HenggeR. (2009). Principles of c-di-GMP signalling in bacteria.Nat. Rev. Microbiol.7263–273. 10.1038/nrmicro2109
37
HowlinR. P.CathieK.Hall-StoodleyL.CorneliusV.DuignanC.AllanR. N.et al (2017). Low-dose nitric oxide as targeted anti-biofilm adjunctive therapy to treat chronic Pseudomonas aeruginosa infection in cystic fibrosis.Mol. Ther.252104–2116. 10.1016/j.ymthe.2017.06.021
38
JenalU.MaloneJ. (2006). Mechanisms of cyclic-di-GMP signaling in bacteria.Annu. Rev. Genet.40385–407. 10.1146/annurev.genet.40.110405.090423
39
JensenV.LonsD.ZaouiC.BredenbruchF.MeissnerA.DieterichG.et al (2006). RhlR expression in Pseudomonas aeruginosa is modulated by the Pseudomonas quinolone signal via PhoB-dependent and -independent pathways.J. Bacteriol.1888601–8606. 10.1128/jb.01378-06
40
KawakamiT.KurokiM.IshiiM.IgarashiY.AraiH. (2010). Differential expression of multiple terminal oxidases for aerobic respiration in Pseudomonas aeruginosa.Environ. Microbiol.121399–1412. 10.1111/j.1462-2920.2009.02109.x
41
KlareW.DasT.IbugoA.BuckleE.ManefieldM.ManosJ. (2016). Glutathione-disrupted biofilms of clinical Pseudomonas aeruginosa strains exhibit an enhanced antibiotic effect and a novel biofilm transcriptome.Antimicrob. Agents Chemother.604539–4551. 10.1128/AAC.02919-15
42
KlockgetherJ.TümmlerB. (2017). Recent advances in understanding Pseudomonas aeruginosa as a pathogen.F1000Res.6:1261. 10.12688/f1000research.10506.1
43
KulkarniH. M.JagannadhamM. V. (2014). Biogenesis and multifaceted roles of outer membrane vesicles from Gram-negative bacteria.Microbiology1602109–2121. 10.1099/mic.0.079400-0
44
LaSarreB.FederleM. J. (2013). Exploiting quorum sensing to confuse bacterial pathogens.Microbiol. Mol. Biol. Rev.7773–111. 10.1128/MMBR.00046-12
45
LatifiA.FoglinoM.TanakaK.WilliamsP.LazdunskiA. (1996). A hierarchical quorum-sensing cascade in Pseudomonas aeruginosa links the transcriptional activators LasR and RhlR (VsmR) to expression of the stationary-phase sigma factor RpoS.Mol. Microbiol.211137–1146. 10.1046/j.1365-2958.1996.00063.x
46
LeeJ.ZhangL. (2015). The hierarchy quorum sensing network in Pseudomonas aeruginosa.Protein Cell626–41. 10.1007/s13238-014-0100-x
47
MahT. F.PittsB.PellockB.WalkerG. C.StewartP. S.O’TooleG. A. (2003). A genetic basis for Pseudomonas aeruginosa biofilm antibiotic resistance.Nature426306–310. 10.1038/nature02122
48
ManosJ.ArthurJ.RoseB.BellS.TingpejP.HuH.et al (2009). Gene expression characteristics of a cystic fibrosis epidemic strain of Pseudomonas aeruginosa during biofilm and planktonic growth.FEMS Microbiol. Lett.292107–114. 10.1111/j.1574-6968.2008.01472.x
49
Mashburn-WarrenL.HoweJ.GaridelP.RichterW.SteinigerF.RoessleM.et al (2008). Interaction of quorum signals with outer membrane lipids: insights into prokaryotic membrane vesicle formation.Mol. Microbiol.69491–502. 10.1111/j.1365-2958.2008.06302.x
50
MavrodiD. V.BonsallR. F.DelaneyS. M.SouleM. J.PhillipsG.ThomashowL. S. (2001). Functional analysis of genes for biosynthesis of pyocyanin and phenazine-1-carboxamide from Pseudomonas aeruginosa PAO1.J. Bacteriol.1836454–6465. 10.1128/jb.183.21.6454-6465.2001
51
McGrathS.WadeD. S.PesciE. C. (2004). Dueling quorum sensing systems in Pseudomonas aeruginosa control the production of the Pseudomonas quinolone signal (PQS).FEMS Microbiol. Lett.23027–34. 10.1016/s0378-1097(03)00849-8
52
McKnightS. L.IglewskiB. H.PesciE. C. (2000). The Pseudomonas quinolone signal regulates rhl quorum-sensing in Pseudomonas aeruginosa.J. Bacteriol.1822702–2708. 10.1128/jb.182.10.2702-2708.2000
53
MeighenE. A. (1991). Molecular biology of bacterial bioluminescence.Microbiol. Rev.55123–142.
54
MonroeD. (2007). Looking for chinks in the armor of bacterial biofilms.PLoS Biol.5:e307. 10.1371/journal.pbio.0050307
55
OchsnerU. A.FiechterA.ReiserJ. (1994a). Isolation, characterization, and expression in Escherichia coli of the Pseudomonas aeruginosa rhlAB genes encoding a rhamnosyltransferase involved in rhamnolipid biosurfactant synthesis.J. Biol. Chem.26919787–19795.
56
OchsnerU. A.KochA. K.FiechterA.ReiserJ. (1994b). Isolation and characterization of a regulatory gene affecting rhamnolipid biosurfactant synthesis in Pseudomonas aeruginosa.J. Bacteriol.1762044–2054. 10.1128/jb.176.7.2044-2054.1994
57
OchsnerU. A.ReiserJ. (1995). Autoinducer-mediated regulation of rhamnolipid biosurfactant synthesis in Pseudomonas aeruginosa.Proc. Natl. Acad. Sci. U.S.A.926424–6428. 10.1073/pnas.92.14.6424
58
OglesbyA. G.FarrowJ. M. I. I. I.LeeJ. H.TomarasA. P.GreenbergE. P.PesciE. C.et al (2008). The influence of iron on Pseudomonas aeruginosa physiology: a regulatory link between iron and quorum sensing.J. Biol. Chem.28328315558–28315567. 10.1074/jbc.M707840200
59
OliverA.MuletX.López-CausapéC.JuanC. (2015). The increasing threat of Pseudomonas aeruginosa high-risk clones.Drug Resist. Update241–59. 10.1016/j.drup.2015.08.002
60
PassadorL.CookJ. M.GambelloM. J.RustL.IglewskiB. H. (1993). Expression of Pseudomonas aeruginosa virulence genes requires cell-to-cell communication.Science2601127–1130. 10.1126/science.8493556
61
PearsonJ. P.GrayK. M.PassadorL.TuckerK. D.EberhardA.IglewskiB. H.et al (1994). Structure of the autoinducer required for expression of Pseudomonas aeruginosa virulence genes.Proc. Natl. Acad. Sci. U.S.A.91197–201. 10.1073/pnas.91.1.197
62
PearsonJ. P.PassadorL.IglewskiB. H.GreenbergE. P. (1995). A second N-acylhomoserine lactone signal produced by Pseudomonas aeruginosa.Proc. Natl. Acad. Sci. U.S.A.921490–1494. 10.1073/pnas.92.5.1490
63
PearsonJ. P.PesciE. C.IglewskiB. H. (1997). Roles of Pseudomonas aeruginosa las and rhl quorum-sensing systems in control of elastase and rhamnolipid biosynthesis genes.J. Bacteriol.1795756–5767. 10.1128/jb.179.18.5756-5767.1997
64
PesciE. C.MilbankJ. B.PearsonJ. P.McKnightS.KendeA. S.GreenbergE. P.et al (1999). Quinolone signaling in the cell-to-cell communication system of Pseudomonas aeruginosa.Proc. Natl. Acad. Sci. U.S.A.9611229–11234. 10.1073/pnas.96.20.11229
65
PesciE. C.PearsonJ. P.SeedP. C.IglewskiB. H. (1997). Regulation of las and rhl quorum sensing in Pseudomonas aeruginosa.J. Bacteriol.1793127–3132. 10.1128/jb.179.10.3127-3132.1997
66
PessiG.HaasD. (2000). Transcriptional control of the hydrogen cyanide biosynthetic genes hcnABC by the anaerobic regulator ANR and the quorum-sensing regulators LasR and RhlR in Pseudomonas aeruginosa.J. Bacteriol.1826940–6949. 10.1128/jb.182.24.6940-6949.2000
67
PooleK. (2004). Efflux-mediated multiresistance in Gram-negative bacteria.Clin. Microbiol. Infect.1012–26. 10.1111/j.1469-0691.2004.00763.x
68
RahmeL. G.AusubelF. M.CaoH.DrenkardE.GoumnerovB. C.LauG. W.et al (2000). Plants and animals share functionally common bacterial virulence factors.Proc. Natl. Acad. Sci. U.S.A.978815–8821. 10.1073/pnas.97.16.8815
69
RahmeL. G.TanM. W.LeL.WongS. M.TompkinsR. G.CalderwoodS. B.et al (1997). Use of model plant hosts to identify Pseudomonas aeruginosa virulence factors.Proc. Natl. Acad. Sci. U.S.A.9413245–13250. 10.1073/pnas.94.24.13245
70
RaineyK.MichalekS. M.WenZ. T.WuH. (2019). Glycosyltransferase-mediated biofilm matrix dynamics and virulence of Streptococcus mutans.Appl. Environ. Microbiol.85:e02247-18. 10.1128/AEM.02247-18
71
RasamiravakaT.El JaziriM. (2016). Quorum-sensing mechanisms and bacterial response to antibiotics in P. aeruginosa.Curr. Microbiol.73747–753. 10.1007/s00284-016-1101-1
72
RasamiravakaT.LabtaniQ.DuezP.El JaziriM. (2015). The formation of biofilms by Pseudomonas aeruginosa: a review of the natural and synthetic compounds interfering with control mechanisms.Biomed. Res. Int.2015:759348. 10.1155/2015/759348
73
SchertzerJ. W.BouletteM. L.WhiteleyM. (2009). More than a signal: non-signaling properties of quorum sensing molecules.Trends Microbiol.17189–195. 10.1016/j.tim.2009.02.001
74
SchützC.EmptingM. (2018). Targeting the Pseudomonas quinolone signal quorum sensing system for the discovery of novel anti-infective pathoblockers.Beilstein J. Org. Chem.142627–2645. 10.3762/bjoc.14.241
75
SeedP. C.PassadorL.IglewskiB. H. (1995). Activation of the Pseudomonas aeruginosa lasI gene by LasR and the Pseudomonas autoinducer PAI: an autoinduction regulatory hierarchy.J. Bacteriol.177654–659. 10.1128/jb.177.3.654-659.1995
76
SoheiliV.TajaniA. S.GhodsiR.BazzazB. S. F. (2019). Anti-PqsR compounds as next-generation antibacterial agents against Pseudomonas aeruginosa: a review.Eur. J. Med. Chem.17226–35. 10.1016/j.ejmech.2019.03.049
77
SpoeringA. L.LewisK. (2001). Biofilms and planktonic cells of Pseudomonas aeruginosa have similar resistance to killing by antimicrobials.J. Bacteriol.1836746–6751. 10.1128/jb.183.23.6746-6751.2001
78
StewartP. S.CostertonJ. W. (2001). Antibiotic resistance of bacteria in biofilms.Lancet358135–138. 10.1016/s0140-6736(01)05321-1
79
StoodleyP.DebeerD.LewandowskiZ. (1994). Liquid flow in biofilm systems.Appl. Environ. Microbiol.602711–2716.
80
TeitzelG. M.GeddieA.De LongS. K.KirisitsM. J.WhiteleyM.ParsekM. R. (2006). Survival and growth in the presence of elevated copper: transcriptional profiling of copper-stressed Pseudomonas aeruginosa.J. Bacteriol.1887242–7256. 10.1128/jb.00837-06
81
ToderD. S.GambelloM. J.IglewskiB. H. (1991). Pseudomonas aeruginosa LasA: a second elastase under the transcriptional control of lasR.Mol. Microbiol.52003–2010. 10.1111/j.1365-2958.1991.tb00822.x
82
TralauT.VuilleumierS.ThibaultC.CampbellB. J.HartC. A.KerteszM. A. (2007). Transcriptomic analysis of the sulfate starvation response of Pseudomonas aeruginosa.J. Bacteriol.1896743–6750. 10.1128/jb.00889-07
83
Vatcheva-DobrevskaR.MuletX.IvanovI.ZamoranoL.DobrevaE.VelinovT.et al (2013). Molecular epidemiology and multidrug resistance mechanisms of Pseudomonas aeruginosa isolates from Bulgarian hospitals.Microb. Drug Resist.19355–361. 10.1089/mdr.2013.0004
84
VingopoulouE. I.DelisG. A.BatziasG. C.KaltsogianniF.KoutinasA.KristoI.et al (2018). Prevalence and mechanisms of resistance to fluoroquinolones in Pseudomonas aeruginosa and Escherichia coli isolates recovered from dogs suffering from otitis in Greece.Vet. Microbiol.213102–107. 10.1016/j.vetmic.2017.11.024
85
WadeD. S.CalfeeM. W.RochaE. R.LingE. A.EngstromE.ColemanJ. P.et al (2005). Regulation of Pseudomonas quinolone signal synthesis in Pseudomonas aeruginosa.J. Bacteriol.1874372–4380.
86
WagnerV. E.BushnellD.PassadorL.BrooksA. I.IglewskiB. H. (2003). Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment.J. Bacteriol.1852080–2095. 10.1128/jb.185.7.2080-2095.2003
87
WalkerT. S.BaisH. P.DézielE.SchweizerH. P.RahmeL. G.FallR.et al (2004). Pseudomonas aeruginosa-plant root interactions. Pathogenicity, biofilm formation, and root exudation.Plant Physiol.134320–331. 10.1104/pp.103.027888
88
WhiteleyM.LeeK. M.GreenbergE. P. (1999). Identification of genes controlled by quorum sensing in Pseudomonas aeruginosa.Proc. Natl. Acad. Sci. U.S.A.9613904–13909.
89
WillcoxM. D. (2007). Pseudomonas aeruginosa infection and inflammation during contact lens wear: a review.Optom. Vis. Sci.84273–278. 10.1097/opx.0b013e3180439c3e
90
WilliamsP.CamaraM. (2009). Quorum sensing and environmental adaptation in Pseudomonas aeruginosa: a tale of regulatory networks and multifunctional signal molecules.Curr. Opin. Microbiol.12182–191. 10.1016/j.mib.2009.01.005
91
WolskaK. I.GrudniakA. M.RudnickaZ.MarkowskaK. (2016). Genetic control of bacterial biofilms.J. Appl. Genet.57225–238. 10.1007/s13353-015-0309-2
92
XiaJ.GaoJ.TangW. (2016). Nosocomial infection and its molecular mechanisms of antibiotic resistance.Biosci. Trends1014–21. 10.5582/bst.2016.01020
93
XiaoG.DezielE.HeJ.LepineF.LesicB.CastonguayM. H.et al (2006a). MvfR, a key Pseudomonas aeruginosa pathogenicity LTTR-class regulatory protein, has dual ligands.Mol. Microbiol.621689–1699. 10.1111/j.1365-2958.2006.05462.x
94
XiaoG.HeJ.RahmeL. G. (2006b). Mutation analysis of the Pseudomonas aeruginosa mvfR and pqsABCDE gene promoters demonstrates complex quorum-sensing circuitry.Microbiology1521679–1686. 10.1099/mic.0.28605-0
95
ZgurskayaH. I.LöpezC. A.GnanakaranS. (2015). Permeability barrier of gram-negative cell envelopes and approaches to bypass it.ACS Infect. Dis.1512–522. 10.1021/acsinfecdis.5b00097
Summary
Keywords
biofilm, P. aeruginosa, quorum sensing, transcriptome, positive feedback, negative feedback
Citation
Yan S and Wu G (2019) Can Biofilm Be Reversed Through Quorum Sensing in Pseudomonas aeruginosa?. Front. Microbiol. 10:1582. doi: 10.3389/fmicb.2019.01582
Received
02 April 2019
Accepted
25 June 2019
Published
23 July 2019
Volume
10 - 2019
Edited by
Cristina García-Aljaro, University of Barcelona, Spain
Reviewed by
Rodolfo García-Contreras, National Autonomous University of Mexico, Mexico; Akanksha Singh, Central Institute of Medicinal and Aromatic Plants (CIMAP), India
Updates
Copyright
© 2019 Yan and Wu.
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*Correspondence: Guang Wu, hongguanglishibahao@yahoo.com; hongguanglishibahao@gxas.cn
This article was submitted to Antimicrobials, Resistance and Chemotherapy, a section of the journal Frontiers in Microbiology
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