Frontiers in Microbiology | Aquatic Microbiology

Original Research

Accepted on 05 Feb 2026

System design and habitat type drive microbial communities in recirculating aquaculture systems: comparison of conventional fish-only and sustainable aquaponic systems

in Aquatic Microbiology

Alberto Ruiz
Karl Blyth Andree
Dolors Furones Nozal
Daniel Scicchitano
Marco Candela
Ricard Carbó
Enric Gisbert

Frontiers in Microbiology

Original Research

Accepted on 04 Feb 2026

Chlamy_ChloroPred: A deep learning-based, highly accurate binary classifier for chloroplast protein prediction in the model microalga, Chlamydomonas reinhardtii, with potential cross-proteome versatility

in Aquatic Microbiology

Hong Il Choi
Sung Ho Lee
Il Hyung Lee
Yong Jae Lee
Jin-Ho Yun
Dong-Yun Choi
Dae-Hyun Cho
Bum-Soo Shin
Junyoung Chun
Dong Won Lee

Frontiers in Microbiology

Editorial

Accepted on 02 Feb 2026

EDITORIAL: Protistan Phagotrophy and its far reaching implications

in Aquatic Microbiology

Milos Legner
Edward Fillery
Miroslav Macek

Frontiers in Microbiology

331 views

Mini Review

Accepted on 31 Jan 2026

Single-cell Raman Insights into Microbial Strategies for Sustainable Phosphorus Mining and Recycling

in Aquatic Microbiology

Xiaoyan Jing
Pengcheng Sun
Huihui Pan
Dong Cheng
Guangxia Ma

Frontiers in Microbiology

176 views

Original Research

Accepted on 30 Jan 2026

Ecological Responses of Antarctic Chaetoceros spp. to Simulated Melting and Salinity Shifts

in Aquatic Microbiology

Savannah Zigic
Olga Mangoni
Emanuela Serino
Francesco Bolinesi

Frontiers in Microbiology

148 views

Original Research

Accepted on 30 Jan 2026

Comparative Genomics of Crucian Carp-Isolated Flavobacterium psychrophilum: A Foundation for the Prevention and Control of Overwintering Mortality Syndrome in Freshwater Fish in China

in Aquatic Microbiology

Hucheng jiang
zhe Zhao
Yanhua Zhao
Kai Hao
Runbo Li
Aijun Xia
Hui Xue

Frontiers in Microbiology

Original Research

Accepted on 29 Jan 2026

Monsoon-driven short-term temporal changes and geomorphological controls on bacterial community dynamics in Korean coastal lagoons

in Aquatic Microbiology

JungHyun Kwak
Sungmin Hwang
Dongyoung Kim
Dukki Han
Hyun Je Park

Frontiers in Microbiology

111 views

Editorial

Accepted on 28 Jan 2026

Editorial: Occurrence of Harmful Algal Blooms and Marine Biotoxins

in Aquatic Microbiology

Pierina Visciano

Frontiers in Microbiology

100 views

Editorial

Accepted on 28 Jan 2026

Mitigating Microbial Contamination of Drinking Water Sources

in Aquatic Microbiology

Mohamed Azab El-Liethy
Sylvester Chibueze Izah
Godlisten Shao
Matthew Chidozie Ogwu
Ilunga Kamika

Frontiers in Microbiology

457 views

Original Research

Accepted on 27 Jan 2026

Advancing Aquafeed: Prebiotic, Antimicrobial, Antioxidant and Immunomodulatory Benefits of Innovative Ingredients from Farming Systems

in Aquatic Microbiology

Mariana Girão
Diogo Amaral
Gabriel Campos
Ralph Urbatzka
Helena Peres
Rodrigo Ozorio
Maria Fátima Carvalho

Frontiers in Microbiology

249 views

Original Research

Published on 27 Jan 2026

Microbiome changes in the sponge Halichondria panicea along the Baltic Sea salinity gradient

in Aquatic Microbiology

Philipp Hoy
Christiane Hassenrück
Felix Mittermayer-Schmittmann
Lara Schmittmann
Klaus Jürgens

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1723082

481 views

Original Research

Accepted on 26 Jan 2026

Bellamya purificata mitigate the impact of Pomacea canaliculata through gut microbial changes in rice-snail co-culture System

in Aquatic Microbiology

JiaQian Wu
Kangqi ZHOU
Liuping Long
Yong Lin
Zhong Chen
Junqi Qin
Xuesong Du
Hui Wei
Hui Luo
Fangdong Yu

Frontiers in Microbiology

229 views

Original Research

Published on 26 Jan 2026

Genome-based characterization of AHPND and non-AHPND Vibrio campbellii isolates from Republic of Korea

in Aquatic Microbiology

So-Young Lee
Hee-Jae Choi
Seonhyun Lee
Jaeyoung Choi
Jun Soung Kwak
Yue Jai Kang
Sung-Chul Hong

Frontiers in Microbiology

doi 10.3389/fmicb.2026.1724818

786 views

Original Research

Published on 23 Jan 2026

Machine learning reveals microbial interactions driving plastic degradation across plastisphere environments

in Aquatic Microbiology

Akib Al Mahir
Arjun Sathyan Kulathuvayal
Yunjian Lei
Qijun Zhang
Luguang Wang
Yanqing Su
Liyuan Hou

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1691658

1,241 views

Original Research

Published on 23 Jan 2026

Determining biocide efficacy for treating established sulfate-reducing biofilms using flow cell systems

in Aquatic Microbiology

Gloria N. Okpala
Anna L. Walker
Craig Brideau
Pina Colarusso
Lisa M. Gieg

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1646177

1,770 views

Original Research

Published on 22 Jan 2026

The plastisphere and river systems as reservoirs for antibiotic resistant bacteria

in Aquatic Microbiology

Soraya Alfonsi
Francesca Racciatti
Frank Guzman
Attilio Fabbretti
Pohl Milon
Luca Agostino Vitali
Roberto Spurio
Dezemona Petrelli

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1721325

1,151 views

Original Research

Published on 22 Jan 2026

Single-cell RNA-seq reveals a key role for Vibrio cholerae Mak toxins in Tetrahymena pyriformis killing and bacterial survival

in Aquatic Microbiology

Jonah M. Moon
M. Mozammel Hoque
Dana Ronin
Parisa Noorian
Joyce To
Scott A. Rice
Diane McDougald
Gustavo Espinoza-Vergara

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1729243

1,119 views

Original Research

Published on 21 Jan 2026

Consensus scoring-guided virtual screening identifies potent anti-saprolegniasis compounds targeting a P450 fusion protein

in Aquatic Microbiology

Muhammad Akhtar Ali
Anum Javaid
Charuvaka Muvva
Natarajan Arul Murugan
Vaibhav Srivastava

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1723326

762 views

Original Research

Published on 21 Jan 2026

Functional redundancy and niche complementarity maintain nitrification stability in rapid sand filters

in Aquatic Microbiology

Alejandro Palomo
S. Jane Fowler
Ibrahim M. Nemer
Borja Valverde-Pérez
Yan Zheng
Yunjie Ma
Barth F. Smets

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1741059

907 views

Original Research

Published on 21 Jan 2026

Prokaryotic community structure and auxin biosynthesis in early developmental stages of farmed Atlantic Nori (Porphyra spp.)

in Aquatic Microbiology

Francisco Cortez
Enrico Nanetti
Guilherme Chaves
André C. Pereira
Madalena C. Mendes
Inês Oliveira
Daniela Leuzzi
Helena Abreu
Margarida Martins
Ricardo B. Leite

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1750184

1,193 views

Original Research

Accepted on 20 Jan 2026

Composition, Diversity and Functional Potential of Bacterial Community in Four Stony Coral Species from the South China Sea

in Aquatic Microbiology

Zimu Li
Xinyu Liao
Li Mo
Qi Liao
Kaijun Lin
Xinyi Bao
Jijia Sun
Xiaoyong Zhang

Frontiers in Microbiology

110 views

Original Research

Published on 20 Jan 2026

Reestablishment of an algae-bacteria pest model using continuous passage in the laboratory

in Aquatic Microbiology

Thuy M. Nguyen
W. K. N. L. Abeykoon
Alina A. Corcoran

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1691537

817 views

Original Research

Published on 20 Jan 2026

Oxynemamangrovii sp. nov., a new filamentous species (Oscillatoriales, Cyanobacteria) from Atlantic forest mangrove

in Aquatic Microbiology

Gladys A. Apaza-Castillo
Rafael B. Dextro
Ana P. D. Andreote
Bruno C. E. Souza
Guilherme K. Hosaka
Endrews Delbaje
Luis H. Z. Branco
Diego M. Riaño-Pachón
Marli F. Fiore

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1709185

904 views

Review

Published on 20 Jan 2026

The interplay of carbon and nitrogen cycling driven by watershed microorganisms

in Aquatic Microbiology

Guijia Sun
Qiang Zou
Bing Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1696238

757 views

1,939 articles

articles

System design and habitat type drive microbial communities in recirculating aquaculture systems: comparison of conventional fish-only and sustainable aquaponic systems

Chlamy_ChloroPred: A deep learning-based, highly accurate binary classifier for chloroplast protein prediction in the model microalga, Chlamydomonas reinhardtii, with potential cross-proteome versatility

EDITORIAL: Protistan Phagotrophy and its far reaching implications

Single-cell Raman Insights into Microbial Strategies for Sustainable Phosphorus Mining and Recycling

Ecological Responses of Antarctic Chaetoceros spp. to Simulated Melting and Salinity Shifts

Comparative Genomics of Crucian Carp-Isolated Flavobacterium psychrophilum: A Foundation for the Prevention and Control of Overwintering Mortality Syndrome in Freshwater Fish in China

Monsoon-driven short-term temporal changes and geomorphological controls on bacterial community dynamics in Korean coastal lagoons

Editorial: Occurrence of Harmful Algal Blooms and Marine Biotoxins

Mitigating Microbial Contamination of Drinking Water Sources

Advancing Aquafeed: Prebiotic, Antimicrobial, Antioxidant and Immunomodulatory Benefits of Innovative Ingredients from Farming Systems

Microbiome changes in the sponge Halichondria panicea along the Baltic Sea salinity gradient

Bellamya purificata mitigate the impact of Pomacea canaliculata through gut microbial changes in rice-snail co-culture System

Genome-based characterization of AHPND and non-AHPND Vibrio campbellii isolates from Republic of Korea

Machine learning reveals microbial interactions driving plastic degradation across plastisphere environments

Determining biocide efficacy for treating established sulfate-reducing biofilms using flow cell systems

The plastisphere and river systems as reservoirs for antibiotic resistant bacteria

Single-cell RNA-seq reveals a key role for Vibrio cholerae Mak toxins in Tetrahymena pyriformis killing and bacterial survival

Consensus scoring-guided virtual screening identifies potent anti-saprolegniasis compounds targeting a P450 fusion protein

Functional redundancy and niche complementarity maintain nitrification stability in rapid sand filters

Prokaryotic community structure and auxin biosynthesis in early developmental stages of farmed Atlantic Nori (Porphyra spp.)

Composition, Diversity and Functional Potential of Bacterial Community in Four Stony Coral Species from the South China Sea

Reestablishment of an algae-bacteria pest model using continuous passage in the laboratory

Oxynemamangrovii sp. nov., a new filamentous species (Oscillatoriales, Cyanobacteria) from Atlantic forest mangrove

The interplay of carbon and nitrogen cycling driven by watershed microorganisms