Frontiers in Microbiology | Systems Microbiology

Original Research

Accepted on 04 Jul 2025

Overcoming Challenges in Metagenomic AMR Surveillance with Nanopore Sequencing: A Case Study on Fluoroquinolone Resistance

in Systems Microbiology

Bram Bloemen
Mathieu Gand
Moniek Ringenier
Bert Bogaerts
Kevin Vanneste
Kathleen Marchal
Nancy Roosens
JEROEN DEWULF
Filip Boyen
Sigrid C.J. De Keersmaecker

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1614301

Original Research

Published on 04 Jul 2025

Characterization of vaginal microbiota across female reproductive phases

in Systems Microbiology

Qingzhi Zhai
Yuan Gao
Mingyang Wang
Li Li
Lian Li
Jianghua Li
Ying Ma
Ke Niu
Mingxia Ye

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1599965

313 views

Original Research

Accepted on 01 Jul 2025

Six new bacterial species isolated from the phycosphere of marine macroalgae: a joint analysis based on taxonomy and polysaccharide utilization loci

in Systems Microbiology

Dechen Lu
Yuan Ying
Xin-Yun Tan
Le Liu
Jin-Hao Teng
Xue Cui
Tian- He Liu
Jing Zhang
Zong-Jun Du
Ming-yi Wang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1642517

229 views

Original Research

Accepted on 01 Jul 2025

Microbiome and Metabolome Integrated Analysis: Exploring Potential Diagnostic Approaches for Parkinson's Disease Using Tongue Coating Samples

in Systems Microbiology

Runjuan Yang
Mengqi Jia
Ying Xu
Zhenghua Wu
Dongying Wu
Guorong Fan
YAXING GUI

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1621468

Review

Published on 01 Jul 2025

Skin microbiota and diabetic foot ulcers

in Systems Microbiology

Jiaqi Lou
Ziyi Xiang
Xiaoyu Zhu
Jiliang Li
Guoying Jin
Shengyong Cui
Neng Huang
Xin Le
Youfen Fan
Qionghui Sun

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1575081

456 views

Original Research

Accepted on 30 Jun 2025

Six new bacterial species of Marinilabiliales isolated from the marine coastal sediment and reclassified Ancylomarina and Labilibaculum as Marinifilum comb. nov. based on the genome analysis

in Systems Microbiology

Han-Zhe Zhang
Jin-Hao Teng
Hao-Yu Zhou
Tian-He Liu
Dechen Lu
Zong-Jun Du

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1634775

Original Research

Published on 30 Jun 2025

The quadruplex fluorescent quantitative PCR method for the simultaneous detection of respiratory diseases in quail: Pasteurella multocida, Avibacterium paragallinarum, Mycoplasma gallisepticum, and Mycoplasma synoviae

in Systems Microbiology

Haojie Wang
Lihong Xue
Longxi Wang
Yixuan Liu
Jianxing Chen
Yue Sun
Tongqing An
Changwen Li
Hongyan Chen
Changqing Yu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1605356

562 views

Retraction

Accepted on 27 Jun 2025

Retraction: Deciphering the Urinary Microbiota Repertoire by Culturomics Reveals Mostly Anaerobic Bacteria From the Gut

in Systems Microbiology

Frontiers Editorial Office

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1654647

Systematic Review

Accepted on 27 Jun 2025

Bibliometric and Visualized Analysis of the Relationship Between Rheumatoid Arthritis and Periodontitis-Related Bacteria Using CiteSpace Software

in Systems Microbiology

Tianqiong Lin
Zehong Xu
Jiali Chen
Xiaoyu Wang
Qiaoping Li
Biying Ye
Chaoyan Hu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1589331

130 views

Original Research

Accepted on 25 Jun 2025

Bio-Priming of Tomato Seedlings with Bacterial Consortium against Fusarium oxysporum: a study on Morphological Parameters and Molecular Profiling

in Systems Microbiology

Arabi Mohammed Saleh
keerthana R

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1606896

124 views

Original Research

Published on 25 Jun 2025

Constructing inflammatory bowel disease diagnostic models based on k-mer and machine learning

in Systems Microbiology

Liwei Li
Zheng Liu
Jiamin Qin
Guang Xiong
Chongze Yang
Fuqing Cai
Jiean Huang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1578005

700 views

Original Research

Published on 23 Jun 2025

Study on the effects of urea addition on the fermentation quality, nitrogen metabolism, microbial community, and metabolic characteristics of cotton strawlage

in Systems Microbiology

Shuaibin Zhou
Zhenxin Zhu
Xiaoping Chen
Qiuju Pu
Shuai Liu
Yuheng Luo
Yongbin Shao
Yaoqiang Sun
Xinwen Sun
Cuiling Shang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1610850

921 views

Original Research

Published on 20 Jun 2025

Two new species of Ascomycota on bamboo leaves in Fujian, China

in Systems Microbiology

Xiayu Guan
Zhiying Zhao
Nemat O. Keyhani
Taichang Mu
Minhai Zheng
Lixia Yang
Yuchen Mao
Junya Shang
Jiao Yang
Huili Pu

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1555501

459 views

Systematic Review

Published on 19 Jun 2025

Bibliometric analysis of sepsis and gut microbiota: Trends from 2014 to 2024

in Systems Microbiology

Runze Zhang
Chenxing Huo
Chenming He
Jielian Luo
Yunan Shan
Jiamin Lu
Jirong Zhang
Wen Zhang
Bangjiang Fang

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1598443

784 views

Original Research

Published on 18 Jun 2025

Multi-omics integration identifies key biomarkers in retinopathy of prematurity through 16S rRNA sequencing and metabolomics

in Systems Microbiology

Linlin Guo
Ruoming Wang
Liping Han
Yongcheng Fu
Xiujuan Wang
Lintao Nie
Wenjun Fu
Hongyan Ren
Lijia Wu
Guangshuai Li

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1601292

608 views

Original Research

Published on 18 Jun 2025

Gene age and genome organization in Escherichia coli and Bacillus subtilis

in Systems Microbiology

Carsten Jers
Hrvoje Mišetić
Vaishnavi Ravikumar
Abhroop Garg
Damjan Franjević
Tomislav Domazet-Lošo
Ivan Mijakovic

Frontiers in Microbiology

doi 10.3389/fmicb.2025.1512923

783 views