Abstract
Deep brain stimulation (DBS) is a well-established neurosurgical procedure for movement disorders that is also being explored for treatment-resistant psychiatric conditions. This review highlights important consideration for DBS simulation and data analysis. The literature on DBS has expanded considerably in recent years, and this article aims to identify important trends in the field. During DBS planning, surgery, and follow up sessions, several large data sets are created for each patient, and it becomes clear that any group analysis of such data is a big data analysis problem and has to be handled with care. The aim of this review is to provide an update and overview from a neuroengineering perspective of the current DBS techniques, technical aids, and emerging tools with the focus on patient-specific electric field (EF) simulations, group analysis, and visualization in the DBS domain. Examples are given from the state-of-the-art literature including our own research. This work reviews different analysis methods for EF simulations, tractography, deep brain anatomical templates, and group analysis. Our analysis highlights that group analysis in DBS is a complex multi-level problem and selected parameters will highly influence the result. DBS analysis can only provide clinically relevant information if the EF simulations, tractography results, and derived brain atlases are based on as much patient-specific data as possible. A trend in DBS research is creation of more advanced and intuitive visualization of the complex analysis results suitable for the clinical environment.
Introduction
Implantable stimulation devices are important neuroengineering technologies for improving treatment of neurological and psychiatric disorders and symptoms (Thakor, 2009; Johnson et al., 2013; Ereifej et al., 2019). Deep brain stimulation (DBS) (; Hariz, 2003; Vissani et al., 2020; Krauss et al., 2021) is one of the most used neurostimulation methods that is well established for movement disorders such as Parkinson’s disease (PD), dystonia, and essential tremor (ET) (Wong et al., 2020). DBS is also being explored for treatment-resistant psychiatric disorders such as obsessive compulsive disorders (OCD) and depression (Hariz et al., 2013; Sullivan et al., 2021).
More than 200,000 devices (Vedam-Mai et al., 2021) have been implanted worldwide, and research in DBS is rapidly gaining interest. An indicator of this is shown in how the number of scientific papers has quadrupled during the past decade. Scientific papers on DBS now number above 17,000 (PubMed December 2021). DBS is truly a multidisciplinary research field involving neurosurgeons, neurologists, neurophysiologists, psychiatrists, ethicists, nurses, and neuroengineers. Clinical studies are often carried out in collaboration with industry. Despite the rise in interdisciplinary collaboration, the scientific output is still mostly dominated by studies with their base in clinical science.
Since DBS implantations require precise and safe targeting of a specific brain structure, stereotactic systems that rely on high quality brain imaging and surgical planning systems are required. Intraoperative recording of physiological signals is used as a complement for target verification and compensation of trajectory deviations due to brain shift (Hemm and Wårdell, 2010; van den Munckhof et al., 2021). With novel DBS lead designs, the postoperative programming of stimulation results in many available options which require the need for support systems. Simulations of electric field (EF) and anatomical brain atlases can help linking DBS-data with patients’ clinical scoring information in the postoperative evaluation sessions. During DBS planning, surgery, and follow up sessions, many data sets are created for one patient. Hence, when group analysis is required, the number of data sets quickly becomes a big data analysis problem.
The aim of this review is to provide an update and overview from a neuroengineering perspective of the present DBS techniques, technical aids, and emerging tools with the focus on simulation, data analysis and visualization in the DBS domain. As it is necessary to be aware of clinical needs for the neuroengineers working with development of methods we give an introduction to DBS systems, clinical indications and the DBS surgical procedure. Due to the diversity and complexity in DBS, we use as starting point methods developed by our consortium for patient-specific EF simulation, data analysis and visualization.
Deep Brain Stimulation Systems, Clinical Indications, and Brain Targets
Electrical brain stimulation in patients with movement disorders was introduced by Natalia Bechtereva in the mid-1970s (; ). Following these successful implantations of gold electrodes in the deep brain structures, the technical development of stimulation devices continued (Coffey, 2009). In 1987, the first modern DBS lead was implanted by Alim Louis Benabid in Grenoble (; Hariz, 2017), which targeted the nucleus ventrointermedius (VIM) of the thalamus for treatment of tremor. The same team also published, in 1993, the first case of unilateral subthalamic nucleus (STN) DBS in a patient with severe Parkinsonism (Pollak et al., 1993). Later that same year, Lars-Erik Augustinsson performed – but never published – the first bilateral STN implantation in Sweden at Sahlgrenska Hospital, Gothenburg (personal communication). Today, the STN is the most frequently used brain target for DBS in PD. During the first 20 years of the modern DBS era, Medtronic (Minneapolis, MN, United States) was the only DBS company on the market. Today, both Boston Scientific and Abbott (former St Jude) also provide DBS systems which are Conformité Européenne (CE) marked and FDA approved. Recently, the direct STIM™ DBS System, marketed by Aleva Neurotherapeutics, received CE approval.
A variety of DBS lead designs with different contact configurations are available, and examples are shown in Figure 1. Typically, a DBS lead is about 1.3 mm thick and 7.5–10.5 mm long, with four active contacts having a length of 1.5 mm separated by 0.5 or 1.5 mm. There are also configurations with segmented contacts for the steering of the stimulation field in one or more directions. Stimulation is achieved in monopolar or bipolar modes using voltage or current settings. Other modes of stimulation are multiple contact level settings and interleaved, i.e., alternation between contacts and amplitudes. The electric stimulation parameters vary according to the disorders and symptoms to treat. Typical initial settings for PD are 1–4 V in voltage mode and 1–5 mA in current mode at a frequency of 130 Hz and a pulse width of 60 μs (Koeglsperger et al., 2019). However, the frequency and pulse width can be modified during subsequent postoperative clinical evaluations. A recent development by Medtronic is a DBS system designed for combined stimulation and recording of local field potentials (LFP). Using LFP opens for a so-called adaptive stimulation, that is, a closed loop control in the patient’s postoperative management (Thenaisie et al., 2021). The large number of parameter selections can help fine tune the stimulation and thus the clinical outcome, but also makes it more difficult and time-consuming to program a DBS system to optimize the therapy.
FIGURE 1
The brain target region for implantation is carefully chosen based on clinical evaluation of the patient’s symptoms prior to surgery. Depending on the symptoms the implantation is done bi- or unilaterally. For movement disorders, the targets (Figures 2A,B) are in the basal ganglia, including the STN, the globus pallidus internus (GPi), the motor thalamus, and the subthalamic area. The brain targets are generally small. As an example, the STN, which is elliptic disk shaped (Figure 2C), has a volume of around 230–250 mm3 due to having a length of about 10 mm and a width and thickness around 5 mm (Hardman et al., 2002). Different areas of the STN can be stimulated. An extensive review of the literature of STN-DBS in PD shows support for an optimal stimulation area (“sweet” spot) without side effect located in the superior-lateral STN extending to the adjacent white matter between the thalamus and subthalamic nucleus (de Roquemaurel et al., 2021). For treatment of tremor as the only symptom, the VIM of the thalamus or caudal zona incerta (cZi) in the posterior subthalamic area (PSA) are commonly used targets (
FIGURE 2

(A,B) The most common deep brain structures (VIM, Zi, GPi, and STN) used for DBS implantation in movement disorder. (C) An enlargement of the subthalamic nucleus (STN) and its motor, limbic, and associative/limbic part. Panel (C) with permission from
A challenge in DBS surgery is that most of the brain structures that are aimed at are only slightly larger than the DBS lead itself. These small margins are important reasons to why the implantation procedure together with the stimulation parameter settings and lead design are of utmost importance for optimizing the stimulation outcome and to minimize side effects such as paresthesia, dysarthria, muscle, or vision affections. Furthermore, since the variations in brain tissue’s electrical conductivity can alter the stimulation field directions, not only anatomical but also physiological aspects must be considered during DBS programming and set up computer simulations of DBS. For biomedical engineers working in the DBS field, knowledge of the patient flow and techniques for planning and performing DBS surgery help in designing support tools. An update of our previous detailed presentation (Hemm and Wårdell, 2010) of these is given below.
Deep Brain Stimulation Procedure: Preoperative Planning, Surgical Implantation, and Postoperative Follow Up
The way in which DBS surgery is performed differs between clinics. In general, the procedure is split into preoperative planning, surgical implantation, and postoperative follow-up. The general patient flow and techniques used through these steps is illustrated in Figure 3, and a summary of parameters generated during these sessions can be seen in Figure 4.
FIGURE 3

Techniques and methods for pre-operative planning, stereotactic DBS-implantation, and postoperative follow-up. Images and DBS parameters are used to set-up patient-specific simulations and tractography and to do group analysis and build deep brain stimulation atlases.
FIGURE 4

Example of multidimensional large-scale data generated during DBS planning, implantation and postoperative follow up. The data can differ between clinics.
Preoperative Planning and Imaging
The preoperative planning starts by securely fixating a stereotactic frame, e.g., Leksell Stereotactic System (Elekta Instruments AB, Sweden) (Lunsford et al., 2009) to the patient’s skull. A magnetic resonance (MR) or computer tomography (CT) scan with the stereotactic frame and an indicator box attached to the frame is the next step. During the scanning, the stereotactic system creates landmarks (fiducials) in the preoperative images. These images are used for calculating the target coordinates and planning of the trajectory, and as reference for transforming the image coordinates to the stereotactic system coordinates set during surgery. Tailored MRI protocols have been developed for various DBS targets, and these protocols can vary between clinics (Zrinzo, 2010;
The planning of the entry point, trajectory, and target is done on commercial software systems, e.g., Stealth Station (Medtronic Inc., Minneapolis, MN, United States) or iPlan (BrainLab AG, Munich, Germany). The trajectory and target positions are transformed to frame coordinates used during settings of the position in the operating room. A major distinction among surgical procedures is if the patient is asleep or not. Traditionally most surgeries have been done with the patient awake, as this allows for intraoperative testing of the stimulation outcome, especially for movement disorders. Along with better imaging techniques and planning tools and for the comfort of the patients, more centers switch to general anesthesia during surgery, a method used over 20 years at Montpellier University Hospital (Coubes et al., 2002) and the past 10 years at Linköping University Hospital, the DBS Unit in Umeå, and at the National Hospital in London.
Surgical Implantation and Intraoperative Measurements
During surgery, a small burr hole (about 14 mm in diameter) is created for insertion of the lead at the planned entry point. Immediately after opening of the dura, Tisseel glue (Baxter Medical AB, Sweden) is applied to avoid cerebrospinal fluid (CSF) leak and air entry and can thus help reduce the brain shift (Göransson et al., 2021). During surgery, various intraoperative techniques can help guide the surgeon to the pre-planned target. Electrophysiological methods, such as LFP and microelectrode recording (MER), are often combined with intraoperative stimulation tests. Wrist accelerometer recording of stimulation response during surgery for search of optimal target position in relation to intraoperative VIM implantations for tremor and rigidity has been described (Shah et al., 2017; Shah et al., 2020) (Figure 5A). Impedance measurements (Zrinzo and Hariz, 2008) is another intraoperative guidance methods, but with rather low resolution (Johansson et al., 2009) when compared to optical techniques such as diffuse reflectance spectroscopy (DRS) (Giller et al., 2003;
FIGURE 5

(A) Quantitative symptom evaluation using wrist accelerometers as response to intraoperative test stimulation during DBS implantation in awake patient. Reprinted with permission from Springer Nature: Springer, Shah et al. (2017). (B) Intraoperative stereotactic laser Doppler flowmetry measurement of microcirculation along planned trajectory in relation to DBS implantation in asleep patients.
Many centers perform intraoperative position control of the electrode and trajectory with fluoroscopy, i.e., intraoperative 2D X-Ray. Some use an O-arm CT scan while others have a MR scanner readily accessible in the operating room. The detection of the orientation of the segmented DBS leads is a challenge. Egger suggests intraoperative 3D X-ray for identification of the lead direction (Egger et al., 2021). With the aim to intraoperatively track the DBS lead orientation in real-time and before closing the brain, the integration of magnetometers at the tip of the DBS lead is under investigation combined with the development of a magnetic tracking system adapted to the stereotactic environment in the operating room (Quirin et al., 2021). Results with a first prototype show an angle tracking precision of 2.5° ± 2.2° and are thus very encouraging (Vergne et al., 2021).
The total time for imaging, planning, and surgery vary between centers. For example, at Linköping, Umeå, and Queen Square London, the procedure is done in one session and lasts around 4–5 h, including potential optical or impedance measurements, immediate postoperative imaging (with O-arm CT or with MRI), and implantation of battery. Other centers perform the surgery as a 2-day protocol where the frame positioning and imaging are done on 1 day and the surgery the next day. If intraoperative MER is performed, the total time is increased by about 1–3 h depending on the number of trajectories needed for the recording. The most time-consuming step is the postoperative programming of the stimulation.
Postoperative Follow Up
If not already done during surgery, a postoperative control of the final electrode position and the absence of hemorrhage is done by CT or MRI (
The patient follow-up consists of regular consultations. DBS parameters must be individually adapted and the final active contact, pulse width, frequency, and voltage/current fine-tuned and programed. This is done in relation to evaluation of symptom reduction and potential side effects. Scoring systems which vary depending on symptom and disorder are used. Motor symptoms in PD, for instance, are evaluated by the Unified Parkinson’s Disorder Rating Scale (UPDRS) part III. Sometimes, speech analysis is added (Tripoliti et al., 2008). Tremor is evaluated with the Essential Tremor Rating Scale (ETRS). In principle, all disorders/symptoms have their own scoring protocol.
Patient-Specific Modeling, Simulation, and Visualization in Deep Brain Stimulation
Simulation methods of the volume around a DBS lead [also denoted as volume of tissue activated (VTA) or volume of neural activation (VNA)] have been proposed by several groups (McIntyre et al., 2004; Hemm et al., 2005;
Physical Properties
The electrical conductivity is commonly estimated from indirect measures which have been transformed into tabulated values (Gabriel et al., 1996;
The actual axonal diameter, density, and direction in the brain target region is not possible to know and is instead based on anatomical and histology investigations of brain slices. Studies performed in the last decade show the presence of axon thickness below 0.5 μm in the deep brain (Mathai et al., 2013; Liewald et al., 2014), which is smaller than previously assumed. Neuron models are used to describe and mimic the transmission of nerve signals along an axon, and both single cable and double cable models exists. While single cable models are valid for a continuous range of small axon diameters calculated for each iteration, fixed defined axon diameters are applied in double cable models. The first finite element method (FEM) model for DBS (McIntyre et al., 2002; McIntyre et al., 2004) was combined with a double cable model in NEURON® for the simulation of VTA and further developed to be patient-specific (
Linköping University Brain Modeling and Finite Element Method Simulation
An overview of the LiU approach (
FIGURE 6

Overview of workflow for patient-specific EF simulation and tractography. (A) MRI and stimulation parameters; (B) creation of brain model; (C) set up of FEM simulation; (D) visualization of electric field superimposed on preoperative MRI; (E) diffusion model for probabilistic tractography; and (F) visualization of electric field, tractography superimposed on preoperative MRI. GW, gray matter; WM, white matter; CSF, cerebral spinal fluid.
The patient-specific positioning of the lead model in the brain model is most important (
Visualization
For visualization, the LiU concept uses the EF (Figure 6D), i.e., the potential’s first derivative, superimposed on the patients’ own preoperative MRI (
Other visualization methods for presentation of simulation results are sometimes also applied. Particularly, the potential alone or as the potentials second derivative (V/mm2), i.e., the activating function (Rattay, 1986), as commonly used by McIntyre and colleagues. When using DWI atlas-based information to set the conductivity in the models, the activating function is a useful approach (
Open Access and Commercial Simulation Software
The LiU patient-specific DBS modeling and simulation method is available as non-commercial open access applications (APPs)1. It consists of two APPs, ELMA (Figure 7A) and DBSim (Figure 7B), which originate from the patient-specific modeling, simulation, and visualization concept. Both APPs are available for PC, Mac, and UNIX environment and are controlled through a graphical user interface which allows for setting input parameters. ELMA (Wårdell et al., 2011; Johansson et al., 2019) is programed in MATLAB® and used for building the conductivity brain model and further used as input to DBSim, the APP where the actual FEM simulations and visualizations are done. The DBSim is generated using COMSOL Multiphysics and COMSOL Complier™ (COMSOL AB, Sweden) where the boundary condition, mesh size, and governing equations are pre-programed based on our previous experiences (
FIGURE 7

(A) Brain model creation and (B) patient-specific electric field simulation applications (APPs), and their link to the modeling and simulation software. The concept in collecting, presenting, and comparing DBS simulation studies using the DBviS APP is shown in (C).
Also, other researcher groups have developed pipelines for DBS simulations. The Rostock group (
Today, there are also several commercial DBS simulation softwares available in the market. Boston Scientific simulation package (Guide™ DBS System) is a further development from McIntyre and Butson’s Ciceron reference volume methodology (Miocinovic et al., 2007). SureTune™ (Medtronic Inc., Minneapolis, MN, United States) originates from the LiU approach (
Clinical Applications
Over the last decade, the use of DBS simulations has increased to more clinical applications. A few examples are given below from our own experience. In addition, studies were performed together with clinical DBS researchers at Umeå DBS Unit and Department of Neurosurgery in Linköping, both in Sweden, and the Department of Neurosurgery at Clermont Ferrand University Hospital. France, and Functional Neurosurgery at Institute of Neurology, London University College. More examples, also from other groups, are given where the VTA and tractography are combined (see Section “Tractography in Deep Brain Stimulation”), and examples of VTA probabilistic mapping are discussed under Section “Deep Brain Anatomical Templates and Group Analysis.” From a methodology and technical aspect, we have used the FEM simulations for investigation of lead designs influence on the tissue properties. In a paper by
Tractography in Deep Brain Stimulation
Diffusion Weighted Imaging and Estimation of Fiber Tracks
An important aspect to consider in DBS surgery is the location of white matter fibers in the vicinity to the target region and other connected brain areas of importance. These can be investigated with tractography, but requires DWI, i.e., MR signals sensitive to the motion of the water molecules. As for all measurement systems, a key issue is the quality of data collection which, for tractography, originates from pre-programed MR-scanner-dependent DWI protocols. Parameters including number of gradients and b-values, repetition- and echo time of pulse sequence, and voxel size need to be fine tuned to optimize the signal quality for a specific MR camera. Normally, a longer MR scan time gives a higher signal-to-noise ratio and thus improves quality of the diffusion data for the tractography calculations. For a patient situation, however, it will always be a trade-off between scanning time, i.e., what can be allowed in a patient with tremor or other movement symptoms, and the image quality. The mathematics behind the calculations of the anatomical white matter tracts also differ. The major fiber tracking methods used in DBS are either deterministic or probabilistic or can even be a mix between these two. Also, the seeding points are of high importance. Pujol et al. (2015) at Lab of Mathematics, Harvard Medical School, did a systematic investigation of variation in seeding points, diffusion models, and fiber tracking methods of the pyramidal tract and showed that in principle any trajectory can be extracted and visualized if care is not considered in every step of the workflow. This obstacle is due to the inherence of the methods base in the statistical calculations, choice of seeding points, visualization method, and MR data collection. In short, the white matter fibers are difficult to reconstruct in a realistic and reliable way, and care must be taken by every single step along the workflow for the best and most realistic result.
Tractography and Deep Brain Stimulation
The Linköping group has developed, together with the above cited Lab of Mathematics, a workflow for patient-specific probabilistic calculations of detailed white matter tracts as the DRT (Figures 6A,E,F). The DWI protocol takes approximately 8 min to run, which is a realistic scan time for patients with movement disorders. Further details regarding the protocol and workflow can be found in Nordin et al. (2019). A full implementation of this comprehensive workflow was used for the DRT on four patients with essential tremor implanted in the cZi. The precentral gyrus was used as seeding region, while the superior cerebellar peduncle and dentate nucleus were used as waypoints. The white matter crossing fibers were combined with patient-specific EF simulations, and the result was visualized together with the respective individuals anatomical MRI using 3DSlicer developed at Harvard (Fedorov et al., 2012). An example of crossing DRT fibers is shown in Figure 6F. It is clearly seen that the simulated EF overlaps with the DRT. We are now further improving the DWI procedure and transferring an updated version of the workflow to other brain regions relevant for DBS and other neurosurgical applications. As a next step, the open access APPs ELMA and DBSim will be updated with possibility to visualize reconstructed tracts and simulate with anisotropic conductivity.
Tractography has also been suggested as a tool for supporting surgical planning in DBS by
Cortical Connectivity and Deep Brain Stimulation
Other groups have mapped out the cortical fingerprint from STN stimulations.
Other DBS studies have presented pipelines and studies of both cortical brain structural connectivity and functional connectivity mapping for STN-DBS with the aim to predict the outcome in larger cohorts (Horn et al., 2017b). It is, however, important to point out the difference between the two methods, whereas structural connectivity (tractography) is based on DWI as described above, functional connectivity originates from resting-state functional MRI and thus measures correlations from spontaneous variations in the blood oxygenation (BOLD) signal since no specific task is performed (Horn et al., 2021). Wang et al. (2021) did a comparative study between patient-specific and normative structural connectivity and suggests that given an optimized DWI protocol, individualized structural connectivity would have a slightly better potential to estimate clinical outcome following STN.
Deep Brain Anatomical Templates and Group Analysis
Probabilistic mapping of the electric field in larger cohorts is an important aspect to consider when evaluating the stimulation field efficacy of a specific target and its relation to symptom reductions and potential side effects. A major difficulty for data analysis and interpretation and their optimal use for planning of the implantation and chronic stimulation is the individual variability in brain anatomy. The analysis and use of data on a group level can be used as support. The concept consists of transforming each patient’s brain images (MR/CT) to a common reference (anatomical template) and to project other information, such as final implantation position (delineated structures, contact positions, and stimulation efficacy), into the template to analyze the relation between anatomy, stimulation, and symptomatic and adverse effects.
Anatomical Template Generation
Nowinski et al. (2005) was first to suggest normalizing anatomies and best contact locations of a larger cohort implanted in the STN. These were achieved in relation to the Schaltenbrand-Wahren atlas (Schaltenbrand and Bailey, 1959) by using affine transformations. Further extensive work has concentrated on optimizing the tools (Smith et al., 2004;
The present research in our consortium follows a similar approach to create group-specific anatomical references using multiple iterations of state-of-the-art non-linear image registration (Figure 8). In our first study which included 15 patients with PD implanted in cZi (Stenmark Persson et al., 2021), a group average brain template was built from pre-operative T1 MRI only, and non-linearly transformed with Advanced Normalization Tools (ANT) (Figure 8C). Further developments use an iterative mixed-modalities approach with finely tuned settings (Vogel et al., 2021) to preserve details in the deep brain provided by both T1 and the WAIR images of 19 patients with PD and ET (Vogel et al., 2020, 2021) (Figure 8A). The same approach was applied to pre-operative T1 and T2 MRI scans to create a template from a larger cohort (n = 71) of patients with ET with implants in the cZi (Figure 8D) (Nordin et al., 2021b).
FIGURE 8

Example of a deep brain anatomical template alone (A), an anatomical atlas with structural information projected on the anatomical template (B) and stimulation atlases with stimulation maps from patient cohorts projected on the anatomical template for group analysis (C,D). Parameters that can influence the different steps are noted on the left and right sides.
Anatomical Atlas
The anatomical templates represent the basis for a group analysis, i.e., for combining several sources of information and more specifically for analyzing the correlation and the overlap between anatomy and electrical stimulation for a whole patient group. Sources of normalized anatomical information may be of different levels of details. Some studies used histology atlases, such as the Schaltenbrand-Wahren atlas (Nowinski et al., 2005) and Morels atlas (
Stimulation Maps and Atlases
To estimate the electrical effect of stimulation in a patient, several authors include the location and symptomatic effect of the contact of the electrode used for long-term stimulation (Fytagoridis et al., 2013; Lalys et al., 2013). In contrast, a more precise estimation can be done by using in silico simulations of single patient distribution of the EF (
After normalizing/stacking the results of different EF simulations in the same space (be it single patient’s images or group template), several improvement values per voxel are available from an individual patient and/or from a patient group. This information has to be summarized, resulting in a stimulation map with one value per voxel. Different ways of summarizing have been proposed. Examples are unweighted frequency “n-map” (Elias et al., 2021), minimum, maximum (Shah et al., 2020), and weighted “mean-maps” (Nordin et al., 2021b) or “p-maps” denoting the degree of confidence for the stimulation at a voxel associated to a clinical change (Elias et al., 2021). Once the stimulation atlas is set-up including the anatomical template, some researchers project information such as coordinates of activated electrode contacts (Dergachyova et al., 2018) or connectivity profiles (Horn et al., 2017b) to new patients to test the predictability of target location.
Parameters Influencing Group Analysis
As described above, group analysis in DBS is a multi-level problem with each element having several compartments of complexity possibly impacting the final analysis conclusions. de Roquemaurel et al. (2021) recently published a review searching for the “sweet” spot within the subthalamic area for PD. Even if their assessment criteria were subjectively chosen, their results reveal the low quantity of high-quality publications with only few papers using VTA estimation as a criterion. This underlines the need for more high-quality publications. Furthermore, it is extremely important to be aware of all the parameters impacting the result quality. Examples of parameters are given in Figure 8. This includes data used for template generation (healthy subjects/patients; whole brains/deep brain structures; used MRI sequences), the methods and tools applied for registration (linear/non-linear; registration workflows, and settings), and the origin and quality of the available anatomical information being the basis for the interpretation. Further parameters concern the way stimulation results are displayed in template space (contact positions or VTAs), the way VTAs have been defined (patient-specific or not) and tissue types for EF simulations determined (atlas-based, MRI T1/T2 or DWI derived), the number of tissue types derived (gray/white matter, CSF, and blood), the quality of the field data projected onto the patient or the stimulation atlas (image resolution or higher), and the kind and quality of the clinical data linked to these simulations (clinical scales, quantitative evaluations). The influence of the chosen approaches/parameters on the results has to be further investigated in the future in order to get a better idea of the quality of the results obtained. Our research will continue focusing on disease-specific, adapted state-of-the-art MRI-based template generation. Together with structural information from manual segmentations and patient-specific EF simulation, the approaches take into account all tissue types to provide high quality analysis.
From “Mental Imagination” to “Intuitive Visualization”
The amount of data collected during DBS planning, surgery, and follow up (Figures 3, 4) is big and will continue to expand with the introduction of more stimulation options, imaging sequencies, measurement techniques, and evaluation protocols. It will therefore become even more difficult for the neurosurgeon and neurologist to interpret all available data in order to take a decision on the final surgical target and the stimulation parameters by “mental imagination.” Therefore, data-driven support systems which can interact with the user and visualize the necessary information in an intuitive way will be required. Examples of methods for handling different types of DBS data and examples of patient-specific simulation and visualization methods have been presented in this review. Comprehensive pipelines for combining and visualizing atlas data, simulations, and tractography in DBS have been suggested by several groups (
Compared to the traditional statistical and data analysis methods, novel approaches are necessary to explore when the amount of DBS-data increases even more. Artificial intelligence (AI) has regained interest in mining big data and are used to train networks for creating humanlike systems for precision care of neurological indications, among these are movement disorders (Patel et al., 2021). Watts et al. (2020) proposed machine learning (ML) applications in DBS with the focus on PD. They suggest DBS candidate selection, surgical targeting, and programming optimization as the most likely areas where ML can be applied. Few groups have, however, implemented the ideas with real DBS data. Some examples of applications are deep learning of fuzzy recurrence plots as early detection and candidate selection of PD signs through the interaction of keystroke time (Pham et al., 2019). For planning of DBS surgery ML was applied to build white matter tracts in major depression for the medial forebrain bundle (Coenen et al., 2019). Other groups have focused on algorithms for DBS targeting of the STN. Park et al. (2019) developed a deep learning method from MRI records and successfully evaluated it in two implantations, while
Discussion and Conclusion
Deep brain stimulation is a very technology-intensive domain. A high quantity of data is recorded before, during, and after the intervention. Patient-specific use of DWI for tractography and other MR sequences significantly increases the amount of data. Intraoperative data for creating closed loop systems, accelerometer measurements, and optical guiding together with brain atlases and electric field simulations are to be linked to patient records and visualized in an intuitive way. This requires smart systems that can support the clinicians in their planning, surgery, and postoperative evaluation. More than 10 years ago, we suggested (Wårdell and Hemm, 2009) that information technology was the key to improving management and visualizations of DBS data and for implementing new supporting technologies to optimize the trajectory planning and final stimulation target choice (Figures 9A,B). We also proposed that the “mental imagination” should be replaced by “intuitive visualization” (Hemm and Wårdell, 2010). Today the number of research groups and companies working on these topics have increased. Together with improved software tools and high-capacity computers, the DBS community is getting closer to user-friendly visualizing tools facilitating final target choice. It is, however, of outmost importance that users give feedback and question the methods behind the presented results. In the next decade we stipulate that deep learning, ML, and, possibly, AI together with “intuitive visualization” tools will have a high impact on improvement of the support systems (Figure 9C).
FIGURE 9

(A) Supporting techniques for DBS implantation and their approximate time of introduction in functional neurosurgery. (B) Progress during the last 20 years and state of the art. (C) Stipulated progress beyond the state of the art. The size of the circles shows the importance/use today. The striped circles represent novel tools.
But how will the presented tools and methods improve clinical practise? The commercial systems allowing to visualize and compare the VTA for different stimulation approaches are helpful to give an idea of how stimulation look like. Nevertheless, to support neurologists in selecting the optimal stimulation parameters, more complex simulation and patient-specific approaches might be necessary. Disease-specific stimulation atlases taking into account the results of a whole patient population and providing information about “sweet” spots and adverse effect regions along with ML approaches will support parameter programming and surgical planning. Better knowledge about the optimal implant position thanks to identified areas inducing therapeutic and adverse effects from a large amount of data will hopefully result in shorter and a reduced number of programming sessions. The implementation of high-quality fiber tracking in clinical practice will add additional patient-specific information about fibers crossing the target area and responsible for certain clinical effects. Furthermore, the presented techniques can help reduce the surgical planning and intraoperative test session times and further support the transfer from awake to asleep DBS surgeries. The prerequisite to succeed this step is, again, certainly to be aware of, to question, to investigate the different available approaches, and, probably, to push their connection forward. Nearly each clinic has its own implantation strategy, imaging protocols, and different kinds of further available valuable data. An essential step would be to intensify the movement from single-center to multi-center studies and data analyses to increase patient cohorts and to combine results from different targeting approaches and data sources for setting up large data bases and disease-specific stimulation atlases. There are, however, no shortcuts to the next steps in DBS, and the basis will always be the input of data. Therefore, future systems as electric field simulations, tractography, and brain atlases should be based on as much patient-specific information as possible to provide realistic information to the end users in an accepted time perspective relevant to clinical settings.
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Statements
Author contributions
KW initiated and was overall responsible for the study. KW and SH performed the overall tasks including writing, literature survey, and graphics of the manuscript. TN and DV contributed to technical intellectual content regarding data analysis, simulation, and imaging methods, and contributed to literature review and graphics. C-FW contributed to technical intellectual content regarding imaging and tractography. MH and PZ contributed to revising the manuscript with focus on clinical issues and contributed to the literature review. All authors contributed by revising the manuscript critically for important intellectual content.
Funding
This work was supported by the Swedish Foundation for Strategic Research (SSF, BD15-0032), the Swedish Research Council (VR, 2016-03564), the Technical Faculty at Linköping University, Sweden and University of Applied Science and Arts Northwestern Switzerland.
Acknowledgments
The authors would like to acknowledge all former Ph.D. students, senior researchers, and clinical partners that have contributed to the DBS studies. Special thanks to previous Ph.D. students Mattias Åström and Fabiola Alonso, the Department of Biomedical Engineering, Linköping University, Sweden for their dedicated work on developing simulation, data analysis, and visualization methods in the DBS projects.
Conflict of interest
KW is a shareholder of the biomedical optic spin-off company FluoLink AB. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Abbreviations
- AC-PC
anterior and posterior commissure
- AI
artificial intelligence
- cZi
caudal zona incerta
- CT
computer tomography
- DBS
deep brain stimulation
- DRS
diffuse reflectance spectroscopy
- DRT
dentato-rubro-thalamic tract
- DWI
diffusion weighted imaging
- EF
electric field
- ET
essential tremor
- FEM
finite element method
- GPi
globus pallidus internus
- LDF
laser Doppler flowmetry
- LFP
local field potential
- LiU
Linköping University
- MER
microelectrode recording
- ML
machine learning
- MRI
magnetic resonance imaging
- PD
Parkinson’s disease
- PES
peri electrode space
- PSA
posterior subthalamic area
- STN
subthalamic nucleus
- ROI
region of interest
- UPDRS
Unified Parkinson’s Disease Rating Scale
- VIM
nucleus ventrointermedius
- VNA
volume of neural activation
- VTA
volume of tissue activated.
Footnotes
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Summary
Keywords
deep brain stimulation (DBS), modeling and simulation, neuroimaging, probabilistic mapping, connectivity, intraoperative measurements, visualization
Citation
Wårdell K, Nordin T, Vogel D, Zsigmond P, Westin C-F, Hariz M and Hemm S (2022) Deep Brain Stimulation: Emerging Tools for Simulation, Data Analysis, and Visualization. Front. Neurosci. 16:834026. doi: 10.3389/fnins.2022.834026
Received
12 December 2021
Accepted
01 March 2022
Published
11 April 2022
Volume
16 - 2022
Edited by
Ulrich G. Hofmann, University Medical Center Freiburg, Germany
Reviewed by
Volker Tronnier, Universitätsklinikum Schleswig-Holstein, Germany; Ursula van Rienen, University of Rostock, Germany
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© 2022 Wårdell, Nordin, Vogel, Zsigmond, Westin, Hariz and Hemm.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Karin Wårdell, karin.wardell@liu.se
This article was submitted to Neural Technology, a section of the journal Frontiers in Neuroscience
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