ORIGINAL RESEARCH article

Front. Oncol., 04 June 2025

Sec. Cancer Epidemiology and Prevention

Volume 15 - 2025 | https://doi.org/10.3389/fonc.2025.1594591

Dynamic nomogram for predicting the overall survival and cancer-specific survival of patients with gastrointestinal neuroendocrine tumor: a SEER-based retrospective cohort study and external validation

Yipu Wang&#x;Yipu Wang1†Gongning Wang&#x;Gongning Wang1†Chao Song&#x;Chao Song2†Wenqian MaWenqian Ma1Xiuli ZhengXiuli Zheng1Shuo GuoShuo Guo1Qi WangQi Wang1Lan ZhangLan Zhang3Limian Er*Limian Er1*
  • 1Department of Endoscopy, The Fourth Hospital of Hebei Medical University, Shijiazhuang, Hebei, China
  • 2The Third Department of Surgery, The Fourth Hospital of Hebei Medical University, Shijiazhuang, Hebei, China
  • 3Department of Gastroenterology, The Fourth Hospital of Hebei Medical University, Shijiazhuang, Hebei, China

Background: Gastrointestinal neuroendocrine tumor (GI-net) is a rare heterogeneous tumor, and there is a lack of models to predict its prognosis. Our study aims to develop and validate two new nomograms to predict the overall survival (OS) and cancer-specific survival (CSS) of GI-net patients and investigate their application value.

Methods: SEER*Stat 8.4.4 software was used to download clinicopathological information of GI-net patients between 2010 and 2015 from the Surveillance, Epidemiology, and End Results (SEER) database. These patients were randomly divided into a training group (n=3007) and an internal-validation group (n=1289) at a 7:3 ratio. Patients from the Fourth Hospital of Hebei Medical University were enrolled in this study to form the external-validation group (n=86). Univariate and multivariate Cox analyses were performed to explore the independent prognostic factors and establish two nomograms. The concordance index (C-index), area under the time-dependent receiver operating characteristic curve (AUC), calibration curve, and decision curve analysis (DCA) were used to evaluate the nomograms. X-tile was used to divide GI-net patients into high-, medium-, and low-risk groups. Kaplan–Meier (KM) curves and log-rank tests were used to compare survival differences among the three groups.

Results: Seven variables (age, site, size, grade, M stage, surgery, and chemotherapy) were selected to establish the nomogram for OS, and 6 variables (age, size, grade, M stage, surgery, and chemotherapy) were selected for CSS. The C indices (0.785, 0.813, and 0.936 in the training, internal-validation, and external-validation groups for OS; 0.888, 0.893, and 0.930 for CSS, respectively) and AUCs (≥0.7) indicated that the nomograms had satisfactory discriminative ability. Calibration curve analysis and DCA revealed that the nomogram had a satisfactory ability to predict OS and CSS. KM curves indicated that each of the two nomograms clearly differentiated the high-, medium-, and low-risk groups. In addition, two online risk calculators were developed to predict the OS and CSS of these patients visually.

Conclusions: Our nomograms may play an important role in predicting 3- and 5-year OS and CSS for GI-net patients. Risk stratification systems and online risk calculators can be utilized in clinical practice to help doctors create personalized treatment plans.

1 Background

Neuroendocrine neoplasms (NENs) are relatively rare and heterogeneous types of tumors (13), accounting for approximately 2% of all malignant tumors (1). These cells exhibit neuroendocrine differentiation and can secrete various hormones (2). The World Health Organization (WHO) classified NENs in 2022 into well-differentiated neuroendocrine tumors (NETs) and poorly differentiated neuroendocrine carcinomas (NECs) (4). Many studies have shown that NETs and NECs are significantly different in terms of their definitions, clinical pathological characteristics, treatments, and prognoses; thus, NETs should be studied independently.

GI-nets are the most common type of NETs (57). They typically have a hidden onset and slow growth, and their occurrence is associated with mutations in the MEN1 gene, the mTOR pathway, or others (8). In recent years, increased health awareness among the population and advancements in diagnostic technologies, particularly computed tomography and endoscopy, have resulted in a rising overall incidence of gastrointestinal neuroendocrine tumors (6, 9, 10). A population-based study revealed that the age-adjusted annual incidence of NETs increased from 1.09 per 100,000 people in 1973 to 6.98 per 100,000 people in 2012, a growth of 6.4-fold (6). The greatest increases in incidence have been observed in the stomach (15 times) and the rectum (9 times) for NETs (6). Gastrointestinal NETs are the second most common type of digestive system cancer (11, 12). GI-nets show two main types of clinical manifestations (4, 11). The first type includes local symptoms, such as obstructions, bleeding, and perforations, caused by tumor growth. The second type involves systemic symptoms, like carcinoid syndrome and Zollinger-Ellison syndrome, resulting from hormones or bioactive substances released by the tumor. The diagnosis relies on imaging tests and histological evaluations, with endoscopy and biopsy as the gold standard methods. In addition, biomarkers play an important role in the diagnosis and prognosis of GI-nets, showing significant future potential. Chromogranin A (CgA) in serum is a commonly used biomarker for assessing tumor burden and monitoring treatment response, with elevated levels associated with tumor malignancy (13). Furthermore, emerging biomarkers, such as circulating tumor cells (CTC) (14), circulating tumor DNA (15), circulating microRNAs (16), and NETest (17), present new opportunities for the diagnosis and prognostic evaluation of GI-nets.

However, there are still challenges in the prognostic assessment of GI-net patients. Although the tumor-node-metastasis (TNM) staging system, proposed by Pierre Denoix in 1953, is still the gold standard for oncological prognosis (18). However, it has significant limitations, such as low accuracy and the omission of crucial variables that impact tumor prognosis and treatment options, leading to inadequate predictions of individual survival risk. The varied behavior of NETs makes it difficult to design a practical staging system to provide accurate prognostic information (19). Therefore, it is crucial to establish personalized predictive models for GI-net patients. In recent years, nomograms have been widely used for tumor prognosis (2022). One major advantage of nomograms is that they can estimate individual risk on the basis of specific patient and disease characteristics. This ability helps doctors create personalized treatment plans, which improves treatment effectiveness and increases patient survival rates.

However, because GI-nets are rare, few studies have focused on them. Currently, there are no individual predictive models to predict the prognosis of patients with GI-nets. This study aimed to develop two nomograms and online risk calculators to predict the OS and CSS of GI-net patients. We used a large dataset from the SEER database for model building and validated it with an external validation group from a single center.

2 Methods

2.1 Data sources

The SEER database is the authoritative source from the National Cancer Institute (NCI) that tracks cancer incidence and survival rates in the population (23). It has been available since 1973 and is updated every year. Data for related patients diagnosed with GI-nets between 2010–2015 were extracted from the SEER 17 registry database by SEER*Stat 8.4.4 software. Referring to previous research (2426), they were assigned randomly to the training group or the internal-validation group at a 7:3 ratio. This ratio balance optimizes both model training capacity and validation credibility. 86 GI-net patients treated at the Fourth Hospital of Hebei Medical University from 2010 to 2020 served as the external-validation group. The training group was used to select variables and build the model, whereas the validation group was used to validate the model.

The inclusion criteria were as follows: (1) International Classification of Diseases (ICD) codes O–3 morphology: 8240/3 and 8249/3; (2) primary site codes: C16.0–C16.6, C17.0, C17.1–C17.2, C17.3–C17.9, C18.0, C18.1, C18.2–C18.9, C19.9, C20.9, and C25.0–C25.9; (3) staging on the basis of the seventh edition of the AJCC; (4) age at diagnosis > 18 years; and (5) NET as the only confirmed tumor.

The exclusion criteria were as follows: (1) not pathologically confirmed; (2) survival time < 1 month; (3) unknown age, sex, size, T stage, N stage, M stage, treatment methods, etc; and (4) reporting source was autopsy or death certificate only. The specific screening process is shown in Figure 1.

Figure 1
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Figure 1. The flowchart of patients inclusion among the SEER database. The flow diagram of selection of patients with GI-net in this study.

2.2 Variables

The clinicopathological data of the patients included patient information (age and sex), tumor data (site, size, grade, T, N, and M), treatment methods (surgery, radiotherapy, and chemotherapy), and outcome variables (survival status and survival time (months)). X-tile software was used to evaluate the optimal cutoff values for age and tumor size. The primary endpoint of our study was OS, with a secondary focus on CSS. OS was defined as the interval from the date of initial diagnosis to the date of last follow-up or death from any cause. CSS was defined as the interval from the date of initial diagnosis to the date of last follow-up or death specifically due to neuroendocrine causes.

2.3 Ethical approval

This study was approved by the Ethics Committee of the Fourth Hospital of Hebei Medical University (Approval No: 2024KS116), and obtained waiver for informed consent to participate. Our research was conducted in accordance with the Declaration of Helsinki.

2.4 Statistical analysis

The categorical variables are presented as percentages, and the continuous variables are presented as the means ± standard deviations (SDs). Univariate Cox regression was used to calculate the hazard ratio (HR) and 95% confidence interval (CI) for each risk factor. Significant factors identified in the univariate analysis were included in the multivariate Cox regression. This inclusion is based on the Akaike information criterion (AIC). In the multivariate analysis, significant clinical variables served as independent predictive factors. These factors were used to create nomograms that predict 3-year and 5-year OS and CSS. The C-index and time‐dependent receiver operating characteristic (ROC) curve were used to evaluate the predictive ability of the nomogram. The C-index and AUC ≥ 0.7 indicate that the nomogram has good predictive discrimination ability. The calibration curve was used to evaluate the difference between the predicted results and the actual results of the nomogram. The closer the predicted calibration curve is to the standard curve, the greater the predictive ability of the nomogram. Decision curve analysis was used to assess the clinical benefit of the nomogram, quantifying the net benefit at different threshold probabilities. KM curves and the log-rank test were used to analyze differences in OS and CSS among the different groups. The p value was used for all the statistical analyses, with p<0.05 defined as statistically significant.

Variance inflation factor (VIF) values were computed to assess the extent of multicollinearity present among the characteristics (27). VIF of >5 indicates that the characteristics are highly correlated and should be considered for removal. Additionally, Pearson’s correlation coefficients were determined to identify collinearity between the characteristics (28). Specifically, a correlation coefficient of <1 between any two independent characteristics was interpreted as an absence of multicollinearity.

Statistical analysis and plotting were completed using R 4.4.1 (http://www.R-project.org/) and the RStudio environment.

3 Results

3.1 Baseline patient demographics

A total of 4,296 GI-net patients were selected from the SEER database and assigned randomly to the training group (n=3007) or the internal-validation group (n=1289). Additionally, 86 GI-net patients from our hospital were included in the external-validation group. The baseline demographics and clinicopathologic characteristics are listed in Table 1. No significant differences in demographics and clinical characteristics were observed between the training and internal-validation groups (all P > 0.05). In the SEER group (n=4296), the average age of patients is 55.55 ± 14.43 years. There are more female patients than male (53.84% vs 46.15%). The most common site of GI-net is the small intestine (42.76%). A majority of patients are in the early stage (T0-2: 69.9%, N0: 68.92%, M0: 90.29%). More patients underwent surgery (95.68%), while fewer received radiotherapy (0.37%) and chemotherapy (2.58%). In the external-validation group (n=86), the average age of patients is 54.45 ± 11.60 years. The most common site of onset is the stomach (43.02%).

Table 1
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Table 1. The baseline clinical characteristics of the GI-net patients in training group, internal-validation group, and external-validation group.

The optimal cutoff values for patient age and tumor size were calculated using X-tile software version 3.6.1 (https://x-tile.software.informer.com/) (Figure 2). For OS, the optimal cutoff values for age are 58 and 72 years, and for tumor size are 9 and 23 mm. For CSS, the optimal cutoff values for age are 58 and 73 years, and for tumor size are 14 and 26 mm.

Figure 2
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Figure 2. The optimal cut-off value of age and size calculated by X-tile. The age and size data were presented in a triangular grid pattern. Each pixel highlight represented the log-rank teat value [(A) age of OS, (C) size of OS, (E) age of CSS, (G) size of CSS], the distribution of the number of patients is shown in the histogram (B) age of OS, [(D) size of OS, (F) age of CSS, (H) size of CSS]. OS, overall survival; CSS, cancer-specific survival.

Nomogram variable screening a total of 11 clinical variables were included. According to the univariate Cox regression analysis, only sex was not associated with OS (P=0.08), and CSS was similarly unaffected (P=0.648). The remaining variables were included in the multivariate Cox regression analysis. The multivariate Cox regression analysis revealed that age, site, size, grade, M stage, surgery, and chemotherapy were independent prognostic factors for OS (Table 2). For CSS (Table 3), age, size, grade, M stage, surgery, and chemotherapy were found to be independent prognostic factors.

Table 2
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Table 2. Univariate and multivariate analyses of OS for GI-net patients.

Table 3
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Table 3. Univariate and multivariate analyses of CSS for GI-net patients.

All the Pearson’s correlation coefficients between pairs of characteristics were < 1 and the VIF values were <5, indicating no collinearity among the independent characteristics (Supplementary Figure 1).

3.2 Nomogram construction and validation

Nomograms were constructed to predict the 3-year and 5-year OS and CSS rates using the selected clinical variables (Figure 3). Each variable’s value corresponds to a specific individual score. By summing all the individual scores, we can determine the total score. The point where this total score’s vertical line intersects with the predicted probability line indicates the patient’s 3-year and 5-year survival rates. In the nomograms for OS and CSS, age was the most significant variable affecting survival outcomes.

Figure 3
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Figure 3. Nomograms for predicting 3- and 5-year OS and CSS of GI-net patients. (A) nomogram to predict 3-, and 5-year OS for GI-net patients; (B) nomogram to predict 3-, and 5-year CSS for GI-net patients. OS, overall survival; CSS, cancer-specific survival.

The C indices for OS were as follows: training group, 0.785 (95% CI: 0.764–0.805); internal-validation group, 0.813 (95% CI: 0.785–0.841); and external-validation group, 0.936 (95% CI: 0.859–1.013). For CSS, the C indices were as follows: training group: 0.888 (95% CI: 0.866–0.911); internal-validation group: 0.893 (95% CI: 0.864–0.922); and external-validation group: 0.930 (95% CI: 0.849–1.011). All the C indices are greater than 0.70. The AUCs of the nomogram for predicting 3- and 5-year OS were 0.780 and 0.799, respectively (Figure 4A). The AUCs of the nomogram for predicting 3- and 5-year CSS were 0.874 and 0.905, respectively (Figure 4D). The internal-validation group and the external-validation group yielded similar results (≥0.7) (Figures 4B, C, E, F). These findings indicate that the two nomograms we established were accurate. The calibration curves (Figure 5) revealed high consistency between the predicted OS and CSS probabilities and the actual occurrence probabilities in the three groups. Moreover, DCA (Figure 6) revealed that the nomograms had good net clinical benefits. Therefore, our nomograms showed good predictive ability for GI-net patients.

Figure 4
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Figure 4. Time-dependent ROC curves of nomograms. (A) Time-dependent ROC curves of the OS nomogram showed that the AUCs in the training group were 0.7799,and 0.7993 for predicting 3-year and 5-year OS, respectively. (B) Time-dependent ROC curves of the OS nomogram showed that the AUCs in the internal-validation group were 0.8542, and 0.8493 for predicting 3-year and 5-year OS, respectively. (C) Time-dependent ROC curves of the OS nomogram showed that the AUCs in the external-validation group were 0.9812, and 0.9901 for predicting 3-year and 5-year OS, respectively. (D) Time-dependent ROC curves of the CSS nomogram showed that the AUCs in the training group were 0.8730, and 0.9051 for predicting 3-year and 5-year CSS, respectively. (E) Time-dependent ROC curves of the CSS nomogram showed that the AUCs in the internal-validation group were 0.9100 and 0.9098 for predicting 3-year and 5-year CSS, respectively. (F) Time-dependent ROC curves of the CSS nomogram showed that the AUCs in the external-validation group were 0.9812 and 0.9911 for predicting 3-year and 5-year CSS, respectively. AUC, area under the time‐dependent receiver operating characteristic curves; OS, overall survival; CSS, cancer-specific survival.

Figure 5
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Figure 5. Calibration curves of nomograms. (A–C) Calibration curves of 3-year and 5-year OS for GI-net patients in training, internal-validation, and external-validation groups. (D–F) Calibration curves of 3-year and 5-year CSS for GI-net patients in training, internal-validation, and external-validation groups. GI-net, gastrointestinal neuroendocrine tumor; OS, overall survival; CSS, cancer-specific survival.

Figure 6
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Figure 6. Decision curve analysis (DCA) of nomograms. (A–C) DCA of 3-year and 5-year OS for GI-net patients in training, internal-validation, and external-validation groups. (D–F) DCA of 3-year and 5-year CSS for GI-net patients in training, internal-validation, and external-validation groups. GI-net, gastrointestinal neuroendocrine tumor; OS, overall survival; CSS, cancer-specific survival.

3.3 Risk stratification for GI-net patients

Risk stratification is very important for guiding doctors in patient management. X-tile software was used to determine the optimal cutoff value for risk stratification on the basis of the overall nomogram score of patients (Figure 7). Patients were divided into three risk groups: low-risk (OS: points ≤ 73.6; CSS: points ≤ 84.6), medium-risk (OS: 73.6 < points ≤ 134.6; CSS: 84.6 < points ≤ 175.9), and high-risk (OS: points > 134.6; CSS: points > 175.9) groups. KM survival curves and log-rank tests revealed significant differences among the three risk groups (p < 0.001) in the training cohort (Figure 8). The internal-validation group and the external-validation group yielded similar results. These findings indicate the effectiveness of the nomogram risk stratification system.

Figure 7
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Figure 7. The optimal cut-off value of nomograms score calculated by X-tile. The nomogram score data were presented in a triangular grid pattern. Each pixel highlight represented the log-rank teat value [(A) nomogram score of OS, (C) nomogram score of CSS], the distribution of the number of patients is shown in the histogram [(B) nomogram score of OS, (D) nomogram score of CSS]. OS, overall survival; CSS, cancer-specific survival.

Figure 8
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Figure 8. Kaplan–Meier survival analyses for GI-net patients according to the risk stratification. Survival curves showed the OS [(A) and CSS (D) of the low-risk (1: red),medium-risk (2: green) and high-risk (3: blue) groups in the training group, the OS (B) and CSS (E) in the internal-validation group, and the OS (C)] and CSS (F) in the external-validation group. GI-net, gastrointestinal neuroendocrine tumor; OS, overall survival; CSS, cancer-specific survival.

3.4 Web-based online risk calculator

To facilitate clinical application, we created two online risk calculators based on the shinyapp.io platform (Supplementary Figure 2). These calculators allow doctors to quickly understand patients’ survival probabilities by selecting clinical variables. The web-based OS online risk calculator can be accessed at https://liexiantusc.shinyapps.io/DynNomapp_OS/; the web-based CSS online risk calculator can be accessed at https://dynnom-sc.shinyapps.io/DynNomapp_CSS/.

4 Discussion

The incidence and mortality rates of GI-nets are increasing due to advancements in examination technologies such as endoscopy and imaging, alongside increased health awareness and understanding of diseases (6, 9, 10). The SEER database is an important cancer epidemiology database created and maintained by the NCI in the United States (29). This database provides extensive epidemiological data on GI-nets. In this study, we explored the clinicopathological characteristics and prognostic factors of GI-net patients using data from the SEER database and our hospital’s single-center data.

Previous studies have confirmed the predictive ability of nomograms for gastric (30), small intestine (31, 32), appendiceal (33), and colorectal (34) NETs. These studies all show that clinically applicable nomograms can accurately predict the prognosis of NET patients. Our research involves GI-nets originating from the stomach, small intestine, appendix, cecum, and colon as study characteristics and identifies them as independent prognostic factors for OS. Unfortunately, they have no significant impact on the CSS.

Compared with the previous nomogram by Wu et al. (35) for gastroenteropancreatic neuroendocrine tumors (GEP-nets), our nomogram has several differences. First, pancreatic neuroendocrine tumors (P-nets) and GI-nets have different origins, with P-nets originating from pancreatic neuroendocrine cells (Langerhans tumor cells) and GI-nets originating from enterochromaffin cells (36). Additionally, their pathogenesis, biological behaviors, and treatment methods differ (37). In terms of molecular mechanisms, GI-nets carry APC gene mutations, while P-nets carry mutations in ATRX, FOXO3, and PTEN genes (38). In terms of biological behavior, the metastasis rate of GI-nets is 2.2% to 5.6%, significantly lower than the 34% for P-nets (39). In terms of treatment, the chemotherapy regimens for there are different, and P-nets chemotherapy is used more frequently and show better efficacy (40). Therefore, it is necessary to establish a separate personalized prediction model for GI-net patients. Moreover, our study endpoints included not only OS but also CSS. We have also created online risk calculators. Finally, our nomograms were developed in the training group and validated in both the internal- and external-validation groups; thus, the results have high credibility. This comprehensive analysis is also an important improvement in our research.

Using data from the SEER database and applying univariate and multivariate Cox regression analyses, we identified age, site, size, grade, M stage, surgery, and chemotherapy as risk factors influencing OS, whereas age, size, grade, M stage, surgery, and chemotherapy were found to affect CSS. The C-index, ROC curve, calibration curve, and DCA curve all indicate that the nomograms exhibited strong predictive performance. Additionally, our two nomograms performed exceptionally well in both the internal- and external-validation groups. Furthermore, patients can be effectively divided into high-, medium-, and low-risk groups on the basis of the risk stratification of the nomogram. Patients defined as high-risk by the nomogram are expected to have a poor prognosis. Therefore, we recommend that these patients receive additional treatment and close follow-up. Moreover, for the first time, we have developed two online risk calculators that can predict the OS and CSS of GI-net patients and provide visible results, aiming to offer more references for personalized treatment.

Consistent with previous studies (4143), our research revealed that increasing age is associated with poorer prognosis. This may be related to the decline in immune system function associated with aging, making tumors more likely to evade the host’s immune defenses (44, 45). Our analysis revealed that patients with GI-nets diagnosed at the localized stage had better outcomes than those with regional or distant disease. These findings underscore the critical importance of early detection and treatment of NETs. Interestingly, traditional “T” and “N” stages were not included as independent prognostic factors for OS or CSS. This suggests that traditional TNM staging has certain limitations and highlights the necessity of constructing a prognostic model specifically for GI-net patients.

Despite the good performance of the nomograms, there are still several limitations. First, this is a retrospective study based on the SEER database and a single center in our hospital, so selection bias is unavoidable. In addition, the SEER database does not provide genetic data, Ki-67 levels, or radiotherapy or chemotherapy regimens, which prevents us from evaluating the impact of gene mutations, cellular proliferation activity, or treatment regimens on OS and CSS in patients with GI-nets. As a result, the predictive accuracy could be limited for GI-net patients with specific genetic mutations, high proliferation activity, or those undergoing particular treatment regimens. Future multicenter studies are needed to integrate molecular markers and treatment details to further optimize predictive models. Finally, due to the limited size of the external-validation group, additional multicenter prospective validation studies are needed. Despite these limitations, this is a large population-based study that investigated the prognostic factors of GI-net patients and confirmed that the nomograms have good predictive ability.

5 Conclusion

We established and validated two new nomograms and online risk calculators to predict 3- and 5-year OS and CSS for GI-net patients. Our nomograms demonstrated satisfactory accuracy and effectively distinguished between three different risk groups of patients. This may assist with precision and personalized treatment for GI-net patients.

Data availability statement

The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found below: SEER database, http://seer.cancer.gov/seerstat.

Ethics statement

The studies involving humans were approved by the Ethics Committee of the Fourth Hospital of Hebei Medical University (Approval No: 2024KS116). The studies were conducted in accordance with the local legislation and institutional requirements. Written informed consent for participation was not required from the participants or the participants' legal guardians/next of kin in accordance with the national legislation and institutional requirements.

Author contributions

YW: Validation, Writing – original draft, Investigation, Software. GW: Investigation, Writing – original draft, Software, Methodology. CS: Methodology, Writing – original draft, Software, Validation. WM: Software, Writing – review & editing. XZ: Investigation, Writing – review & editing. SG: Writing – review & editing, Validation. QW: Writing – review & editing, Validation. LZ: Validation, Writing – review & editing. LE: Funding acquisition, Project administration, Writing – review & editing, Supervision.

Funding

The author(s) declare that financial support was received for the research and/or publication of this article. This work was supported by Hebei Provincial Government Funded Excellent Clinical Medicine Talent Project (No.2022180), Medical Science Research Project of Hebei (No.20200111).

Acknowledgments

The authors thank the SEER database for the availability of the data.

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Generative AI statement

The author(s) declare that no Generative AI was used in the creation of this manuscript.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Supplementary material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fonc.2025.1594591/full#supplementary-material

Abbreviations

AIC, Akaike information criterion; AUC, Area under the time-dependent receiver operating characteristic curve; CgA, Chromogranin A; C-index, Concordance index; CI, Confidence interval; CSS, Cancer-specific survival; CTC, Circulating tumor cells; DCA, Decision curve analysis; GEP-nets, Gastroenteropancreatic neuroendocrine tumors; HR, Hazard ratio; ICD, International Classification of Diseases; GI-net, Gastrointestinal neuroendocrine tumor; KM, Kaplan–Meier; NCI, National Cancer Institute; NECs, Neuroendocrine carcinomas; NENs, Neuroendocrine neoplasms; NETs, Neuroendocrine tumors; OS, Overall survival; P-nets, Pancreatic neuroendocrine tumors; ROC, Receiver operating characteristic; SDs, Standard deviations; SEER, Surveillance, Epidemiology, and End Results; TNM, Tumor-node-metastasis; VIF, Variance inflation factor; WHO, World Health Organization.

References

1. Oronsky B, Ma PC, Morgensztern D, and Carter CA. Nothing but NET: A review of neuroendocrine tumors and carcinomas. Neoplasia (New York NY). (2017) 19:991–1002. doi: 10.1016/j.neo.2017.09.002

PubMed Abstract | Crossref Full Text | Google Scholar

2. Shah MH, Goldner WS, Halfdanarson TR, Bergsland E, Berlin JD, Halperin D, et al. NCCN guidelines insights: neuroendocrine and adrenal tumors, version 2.2018. J Natl Compr Cancer Network: JNCCN. (2018) 16:693–702. doi: 10.6004/jnccn.2018.0056

PubMed Abstract | Crossref Full Text | Google Scholar

3. Yao JC, Hassan M, Phan A, Dagohoy C, Leary C, Mares JE, et al. One hundred years after “carcinoid”: epidemiology of and prognostic factors for neuroendocrine tumors in 35,825 cases in the United States. J Clin oncology: Off J Am Soc Clin Oncology. (2008) 26:3063–72. doi: 10.1200/JCO.2007.15.4377

PubMed Abstract | Crossref Full Text | Google Scholar

4. Rindi G, Mete O, Uccella S, Basturk O, La Rosa S, Brosens LAA, et al. Overview of the 2022 WHO classification of neuroendocrine neoplasms. Endocrine pathology. (2022) 33:115–54. doi: 10.1007/s12022-022-09708-2

PubMed Abstract | Crossref Full Text | Google Scholar

5. Fraenkel M, Kim M, Faggiano A, de Herder WW, and Valk GD. Incidence of gastroenteropancreatic neuroendocrine tumors: a systematic review of the literature. Endocrine-related cancer. (2014) 21:R153–63. doi: 10.1530/ERC-13-0125

PubMed Abstract | Crossref Full Text | Google Scholar

6. Dasari A, Shen C, Halperin D, Zhao B, Zhou S, Xu Y, et al. Trends in the incidence, prevalence, and survival outcomes in patients with neuroendocrine tumors in the United States. JAMA oncology. (2017) 3:1335–42. doi: 10.1001/jamaoncol.2017.0589

PubMed Abstract | Crossref Full Text | Google Scholar

7. Sultana Q, Kar J, Verma A, Sanghvi S, Kaka N, Patel N, et al. A comprehensive review on neuroendocrine neoplasms: presentation, pathophysiology and management. J Clin Med. (2023) 12(15):5138. doi: 10.3390/jcm12155138

PubMed Abstract | Crossref Full Text | Google Scholar

8. Oberg K, Casanovas O, Castaño JP, Chung D, Delle Fave G, Denèfle P, et al. Molecular pathogenesis of neuroendocrine tumors: implications for current and future therapeutic approaches. Clin Cancer research: an Off J Am Assoc Cancer Res. (2013) 19:2842–9. doi: 10.1158/1078-0432.CCR-12-3458

PubMed Abstract | Crossref Full Text | Google Scholar

9. Das S and Dasari A. Epidemiology, incidence, and prevalence of neuroendocrine neoplasms: are there global differences? Curr Oncol Rep. (2021) 23:43. doi: 10.1007/s11912-021-01029-7

PubMed Abstract | Crossref Full Text | Google Scholar

10. Chauhan A, Kohn E, and Del Rivero J. Neuroendocrine tumors-less well known, often misunderstood, and rapidly growing in incidence. JAMA oncology. (2020) 6:21–2. doi: 10.1001/jamaoncol.2019.4568

PubMed Abstract | Crossref Full Text | Google Scholar

11. Cives M and Strosberg JR. Gastroenteropancreatic neuroendocrine tumors. CA: A Cancer J clinicians. (2018) 68:471–87. doi: 10.3322/caac.21493

PubMed Abstract | Crossref Full Text | Google Scholar

12. Chauhan A, Chan K, Halfdanarson TR, Bellizzi AM, Rindi G, O’Toole D, et al. Critical updates in neuroendocrine tumors: Version 9 American Joint Committee on Cancer staging system for gastroenteropancreatic neuroendocrine tumors. CA: A Cancer J clinicians. (2024) 74:359–67. doi: 10.3322/caac.21840

PubMed Abstract | Crossref Full Text | Google Scholar

13. O’Toole D, Grossman A, Gross D, Delle Fave G, Barkmanova J, O’Connor J, et al. ENETS Consensus Guidelines for the Standards of Care in Neuroendocrine Tumors: biochemical markers. Neuroendocrinology. (2009) 90:194–202. doi: 10.1159/000225948

PubMed Abstract | Crossref Full Text | Google Scholar

14. Hsieh JC, Chen GY, Jhou DD, Chou WC, Yeh CN, Hwang TL, et al. The prognostic value of circulating tumor cells in asian neuroendocrine tumors. Sci reports. (2019) 9:19917. doi: 10.1038/s41598-019-56539-z

PubMed Abstract | Crossref Full Text | Google Scholar

15. Oversoe SK, Sorensen BS, Tabaksblat EM, Gronbaek H, and Kelsen J. Cell-free DNA and clinical characteristics in patients with small intestinal or pancreatic neuroendocrine tumors. Neuroendocrinology. (2022) 112:43–50. doi: 10.1159/000514457

PubMed Abstract | Crossref Full Text | Google Scholar

16. Vicentini C, Fassan M, D’Angelo E, Corbo V, Silvestris N, Nuovo GJ, et al. Clinical application of microRNA testing in neuroendocrine tumors of the gastrointestinal tract. Molecules (Basel Switzerland). (2014) 19:2458–68. doi: 10.3390/molecules19022458

PubMed Abstract | Crossref Full Text | Google Scholar

17. Aluri V and Dillon JS. Biochemical testing in neuroendocrine tumors. Endocrinol Metab Clinics North America. (2017) 46:669–77. doi: 10.1016/j.ecl.2017.04.004

PubMed Abstract | Crossref Full Text | Google Scholar

18. Balachandran VP, Gonen M, Smith JJ, and DeMatteo RP. Nomograms in oncology: more than meets the eye. Lancet Oncology. (2015) 16:e173–80. doi: 10.1016/S1470-2045(14)71116-7

PubMed Abstract | Crossref Full Text | Google Scholar

19. Klimstra DS, Modlin IR, Coppola D, Lloyd RV, and Suster S. The pathologic classification of neuroendocrine tumors: a review of nomenclature, grading, and staging systems. Pancreas. (2010) 39:707–12. doi: 10.1097/MPA.0b013e3181ec124e

PubMed Abstract | Crossref Full Text | Google Scholar

20. Iasonos A, Schrag D, Raj GV, and Panageas KS. How to build and interpret a nomogram for cancer prognosis. J Clin oncology: Off J Am Soc Clin Oncology. (2008) 26:1364–70. doi: 10.1200/JCO.2007.12.9791

PubMed Abstract | Crossref Full Text | Google Scholar

21. Wu J, Zhang H, Li L, Hu M, Chen L, Xu B, et al. A nomogram for predicting overall survival in patients with low-grade endometrial stromal sarcoma: A population-based analysis. Cancer Commun (London England). (2020) 40:301–12. doi: 10.1002/cac2.12067

PubMed Abstract | Crossref Full Text | Google Scholar

22. Mazzucchi E. Both the nomogram and the score system can represent an useful tool especially in those cases where the complication is foreseen by the surgeon. Int Braz J urol: Off J Braz Soc Urology. (2022) 48:828–9. doi: 10.1590/s1677-5538.ibju.2022.0091.1

PubMed Abstract | Crossref Full Text | Google Scholar

23. Doll KM, Rademaker A, and Sosa JA. Practical guide to surgical data sets: surveillance, epidemiology, and end results (SEER) database. JAMA surgery. (2018) 153:588–9. doi: 10.1001/jamasurg.2018.0501

PubMed Abstract | Crossref Full Text | Google Scholar

24. Zhao F, Yang D, He J, Ju X, Ding Y, and Li X. Establishment and validation of a prognostic nomogram for extrahepatic cholangiocarcinoma. Front oncology. (2022) 12:1007538. doi: 10.3389/fonc.2022.1007538

PubMed Abstract | Crossref Full Text | Google Scholar

25. Chang L and Zhao K. Construction and validation of an innovative prognostic nomogram for overall survival in cervical cancer patients with lung metastasis: an analysis utilizing the SEER database. Front oncology. (2024) 14:1397454. doi: 10.3389/fonc.2024.1397454

PubMed Abstract | Crossref Full Text | Google Scholar

26. Zheng C, Gu XT, Huang XL, Wei YC, Chen L, Luo NB, et al. Nomogram based on clinical and preoperative CT features for predicting the early recurrence of combined hepatocellular-cholangiocarcinoma: a multicenter study. La Radiologia medica. (2023) 128:1460–71. doi: 10.1007/s11547-023-01726-2

PubMed Abstract | Crossref Full Text | Google Scholar

27. Li H, Tian Y, Niu H, He L, Cao G, Zhang C, et al. Derivation, validation and assessment of a novel nomogram-based risk assessment model for venous thromboembolism in hospitalized patients with lung cancer: A retrospective case control study. Front oncology. (2022) 12:988287. doi: 10.3389/fonc.2022.988287

PubMed Abstract | Crossref Full Text | Google Scholar

28. Wen K, Yang F, Hu L, Shi J, Mui S, Wang W, et al. Analysis of the potential association between ferroptosis and immune in hepatocellular carcinoma and their relationship with prognosis. Front oncology. (2022) 12:1031156. doi: 10.3389/fonc.2022.1031156

PubMed Abstract | Crossref Full Text | Google Scholar

29. Che WQ, Li YJ, Tsang CK, Wang YJ, Chen Z, Wang XY, et al. How to use the Surveillance, Epidemiology, and End Results (SEER) data: research design and methodology. Military Med Res. (2023) 10:50. doi: 10.1186/s40779-023-00488-2

PubMed Abstract | Crossref Full Text | Google Scholar

30. Li J, Lin Y, Wang Y, Lin H, Lin F, Zhuang Q, et al. Prognostic nomogram based on the metastatic lymph node ratio for gastric neuroendocrine tumor: SEER database analysis. ESMO Open. (2020) 5(2):e000632. doi: 10.1136/esmoopen-2019-000632

PubMed Abstract | Crossref Full Text | Google Scholar

31. Modlin IM, Gustafsson BI, Pavel M, Svejda B, Lawrence B, and Kidd M. A nomogram to assess small-intestinal neuroendocrine tumor (‘carcinoid’) survival. Neuroendocrinology. (2010) 92:143–57. doi: 10.1159/000319784

PubMed Abstract | Crossref Full Text | Google Scholar

32. Levy S, van Veenendaal LM, Korse CM, Breekveldt ECH, Verbeek WHM, Vriens MR, et al. Survival in patients with neuroendocrine tumors of the small intestine: nomogram validation and predictors of survival. J Clin Med. (2020) 9(8):2502. doi: 10.3390/jcm9082502

PubMed Abstract | Crossref Full Text | Google Scholar

33. Mosquera C, Fitzgerald TL, Vora H, and Grzybowski M. Novel nomogram combining depth of invasion and size can accurately predict the risk for regional nodal metastases for appendiceal neuroendocrine tumors (A-NET). J Surg oncology. (2017) 116:651–7. doi: 10.1002/jso.v116.6

PubMed Abstract | Crossref Full Text | Google Scholar

34. Zhuang Y, Yu H, Chen CJ, Jian JL, and Wu XY. Establishment and validation of a prognostic nomogram for patients with colorectal neuroendocrine carcinoma. Asian J surgery. (2024) 47:433–42. doi: 10.1016/j.asjsur.2023.09.099

PubMed Abstract | Crossref Full Text | Google Scholar

35. Wu Z, Shang G, Zhang K, Wang W, Fan M, and Lin R. A nomogram incorporating treatment data for predicting overall survival in gastroenteropancreatic neuroendocrine tumors: a population-based cohort study. Int J Surg (London England). (2024) 110:2178–86. doi: 10.1097/JS9.0000000000001080

PubMed Abstract | Crossref Full Text | Google Scholar

36. Maggard MA, O’Connell JB, and Ko CY. Updated population-based review of carcinoid tumors. Ann surgery. (2004) 240:117–22. doi: 10.1097/01.sla.0000129342.67174.67

PubMed Abstract | Crossref Full Text | Google Scholar

37. Rindi G and Wiedenmann B. Neuroendocrine neoplasms of the gut and pancreas: new insights. Nat Rev Endocrinology. (2011) 8:54–64. doi: 10.1038/nrendo.2011.120

PubMed Abstract | Crossref Full Text | Google Scholar

38. Puccini A, Poorman K, Salem ME, Soldato D, Seeber A, Goldberg RM, et al. Comprehensive genomic profiling of gastroenteropancreatic neuroendocrine neoplasms (GEP-NENs). Clin Cancer research: an Off J Am Assoc Cancer Res. (2020) 26:5943–51. doi: 10.1158/1078-0432.CCR-20-1804

PubMed Abstract | Crossref Full Text | Google Scholar

39. Park HK and Kwon GY. Comparison of metastatic patterns among neuroendocrine tumors, neuroendocrine carcinomas, and nonneuroendocrine carcinomas of various primary organs. J Korean Med science. (2023) 38:e85. doi: 10.3346/jkms.2023.38.e85

PubMed Abstract | Crossref Full Text | Google Scholar

40. Watson C, Tallentire CW, Ramage JK, Srirajaskanthan R, Leeuwenkamp OR, and Fountain D. Quality of life in patients with gastroenteropancreatic tumors: A systematic literature review. World J gastroenterology. (2020) 26:3686–711. doi: 10.3748/wjg.v26.i25.3686

PubMed Abstract | Crossref Full Text | Google Scholar

41. Xu Z, Wang L, Dai S, Chen M, Li F, Sun J, et al. Epidemiologic trends of and factors associated with overall survival for patients with gastroenteropancreatic neuroendocrine tumors in the United States. JAMA network Open. (2021) 4:e2124750. doi: 10.1001/jamanetworkopen.2021.24750

PubMed Abstract | Crossref Full Text | Google Scholar

42. Fang C, Wang W, Feng X, Sun J, Zhang Y, Zeng Y, et al. Nomogram individually predicts the overall survival of patients with gastroenteropancreatic neuroendocrine neoplasms. Br J cancer. (2017) 117:1544–50. doi: 10.1038/bjc.2017.315

PubMed Abstract | Crossref Full Text | Google Scholar

43. Liu Y, Cui R, Wang Z, Lin Q, Tang W, Zhang B, et al. Evaluating prognosis of gastrointestinal metastatic neuroendocrine tumors: constructing a novel prognostic nomogram based on NETPET score and metabolic parameters from PET/CT imaging. Pharmaceuticals (Basel Switzerland). (2024) 17(3):373. doi: 10.3390/ph17030373

PubMed Abstract | Crossref Full Text | Google Scholar

44. Paganelli G, Sansovini M, Nicolini S, Grassi I, Ibrahim T, Amadori E, et al. (177)Lu-PRRT in advanced gastrointestinal neuroendocrine tumors: 10-year follow-up of the IRST phase II prospective study. Eur J nuclear Med Mol imaging. (2021) 48:152–60. doi: 10.1007/s00259-020-04873-0

PubMed Abstract | Crossref Full Text | Google Scholar

45. Galassi C, Chan TA, Vitale I, and Galluzzi L. The hallmarks of cancer immune evasion. Cancer Cell. (2024) 42:1825–63. doi: 10.1016/j.ccell.2024.09.010

PubMed Abstract | Crossref Full Text | Google Scholar

Keywords: gastrointestinal neuroendocrine tumor (GI-net), surveillance epidemiology and end results (SEER) database, nomogram, overall survival (OS), cancer-specific survival (CSS)

Citation: Wang Y, Wang G, Song C, Ma W, Zheng X, Guo S, Wang Q, Zhang L and Er L (2025) Dynamic nomogram for predicting the overall survival and cancer-specific survival of patients with gastrointestinal neuroendocrine tumor: a SEER-based retrospective cohort study and external validation. Front. Oncol. 15:1594591. doi: 10.3389/fonc.2025.1594591

Received: 16 March 2025; Accepted: 19 May 2025;
Published: 04 June 2025.

Edited by:

Hua Zhong, University of Hawaii at Manoa, United States

Reviewed by:

Zhi Li, University of Arizona, United States
Xue Wang, University of Hawaii Cancer Center, United States

Copyright © 2025 Wang, Wang, Song, Ma, Zheng, Guo, Wang, Zhang and Er. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Limian Er, aGJzeWVsbUAxNjMuY29t

These authors have contributed equally to this work and share first authorship

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.