Your new experience awaits. Try the new design now and help us make it even better

ORIGINAL RESEARCH article

Front. Vet. Sci., 06 January 2026

Sec. Veterinary Epidemiology and Economics

Volume 12 - 2025 | https://doi.org/10.3389/fvets.2025.1709294

This article is part of the Research TopicAdvances in Antiviral Agents for Veterinary UseView all articles

Molecular detection of canine viral infectious diseases in China: an investigation from 2018 to 2024

Caihong Liu,,Caihong Liu1,2,3Yalei Chen,Yalei Chen2,3Ningning Cui,Ningning Cui2,3Yihang Yang,Yihang Yang2,3Hangtian Ding,Hangtian Ding2,3Hongchao Wu,Hongchao Wu2,3Yuxiu Liu,
Yuxiu Liu2,3*Kegong Tian,
Kegong Tian2,3*Xingang Xu
Xingang Xu1*
  • 1College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi, China
  • 2National Research Center for Veterinary Medicine, Luoyang, Henan, China
  • 3Luoyang Huizhong Biotechnology Co. Ltd., Luoyang, Henan, China

To analyze the prevalence of canine viral diseases in China, including canine parvovirus type 2 (CPV-2), canine coronavirus (CCoV), canine distemper virus (CDV), canine herpesvirus type 1 (CHV-1), canine parainfluenza virus (CPIV), canine influenza virus (CIV), canine respiratory coronavirus (CRCoV), canine adenovirus 2 (CAV-2), canine adenovirus 1 (CAV-1), and canine rotavirus (CRV), a total of 2,492 samples from dogs in 22 provinces were tested between 2018 and 2024. The results showed that 1,236 dogs (49.6%) tested positive for one or more pathogens, CPV-2 (30.6%) being the most commonly detected, with CPV-2c being the most common genotype. The prevalence of CPV-2, CCoV, CDV, and CHV-1 varied significantly depending on the season, geographical location, and age, with young dogs (<6 months) being more susceptible to infection. The positive rates of CPV-2 and CDV were significantly higher in unvaccinated dogs than in vaccinated ones, whereas infections with CCoV, CPIV, CAV-2, and CAV-1 were not strongly associated with vaccination status. In the serological survey, the protective rates of 398 vaccinated dogs to CPV-2, CDV, CAV-1, CAV-2 and CPIV were 76.9, 72.1, 84.4, 85.7 and 49.0%, respectively. The emergence of a distinct phylogenetic clade of the CPIV F gene may contribute to the reduced protective efficacy against CPIV. Overall, these findings reveal the complex epidemiology of ten canine viral pathogens in China, highlighting the critical need for targeted prevention strategies and more effective vaccine development.

1 Introduction

The growing population of pet dogs in China has raised concerns about the spread of canine infectious diseases (1). Canine distemper virus (CDV) and canine parvovirus type 2 (CPV-2) are the leading causes of death in dogs due to their high morbidity and mortality rates, and they also pose a serious threat to wildlife (2). Canine rotavirus (CRV), a non-enveloped, double-stranded RNA virus, typically causes moderate gastroenteritis but can lead to severe and fatal enteritis in puppies (3). Canine adenovirus (CAV), a non-enveloped, double-stranded DNA virus, includes two genotypes: CAV-1, which causes infectious canine hepatitis (ICH), and CAV-2, which is associated with infectious tracheobronchitis (ITB) and enteritis (46) Canine coronavirus (CCoV), a large, enveloped, single stranded RNA virus, generally causes mild diarrhea in dogs, with high morbidity and low mortality (7, 8). Canine respiratory coronavirus (CRCoV), an enveloped virus containing a non-segmented, positive-sense, single-stranded RNA genome, is considered one of the primary causative agents of canine infectious respiratory disease (CIRD) (9, 10). Canine herpesvirus type 1 (CHV-1) is a double-stranded DNA, enveloped α-herpesvirus (11). Infection with CHV-1 in puppies aged one to 2 weeks can lead to a generalized necrotizing, hemorrhagic disease, whereas asymptomatic or mild, self-limiting infections are more common in puppies older than 3 weeks and adult dogs (11). Canine parainfluenza virus (CPIV), an enveloped, negative-strand RNA virus (12), generally causes mild or no respiratory signs in dogs. Nonetheless, some cases involving serous nasal discharge, mild pharyngitis, and tonsillitis associated with CPIV have also been reported (13). More severe respiratory illness may occur when CPIV infection is complicated by coinfection with other viruses or bacteria (14). Influenza A virus is an enveloped, negative-sense, single-stranded RNA virus, which has a complex natural history and infects a wide range of host species (15, 16). Canine influenza virus (CIV) has been circulating in China for over a decade (17). With the growing number of pet dogs in China, there is increasing concern over the potential for zoonotic transmission (1, 18). CAV-2, CDV, CPIV, CHV-1, CIV, and CRCoV are generally considered the primary pathogens responsible for canine infectious respiratory disease complex (CIRDC) in dogs (19). To further supplement the data on the epidemiology and seroprevalence of canine viral infections in China. The present study investigated the prevalence of ten major canine viruses (CPV-2, CCoV, CDV, CPIV, CHV-1, CIV, CRCoV, CAV-2, CAV-1, and CRV) by nucleic acid detection in 2,492 samples collected from dogs across 22 provinces in China between 2018 and 2024. In addition, gene sequence analyses of CPV-2 and CPIV, as well as serological analyses of CDV, CPV-2, CAV-1, CAV-2, and CPIV, were performed to provide comprehensive epidemiological insights into the canine population.

2 Materials and methods

2.1 Sample collection

Between January 2018 and December 2024, samples were collected from veterinary clinics across 22 provinces in China (Figure 1). All samples were collected as part of the standard diagnostic procedure after obtaining informed owner consent. Clinical monitoring data were recorded for each animal, and all samples were handled in accordance with ethical guidelines. From each of 2,422 dogs exhibiting clinical signs of respiratory or gastrointestinal disease, ocular, nasal, and anal swabs were collected. In addition, tissue samples including lung, trachea, or intestines were collected from 70 dogs that died after exhibiting similar clinical manifestations. Furthermore, between 2020 and 2024, serum samples were collected from 504 dogs in 8 provinces (Figure 1).

Figure 1
Map of China highlighting various provinces with numerical data. Provinces such as Beijing, Tianjin, Hebei, Jiangsu, and others are marked with numbers labeled as n1, n2, and n3, indicating different data points. A red star marks Beijing. A scale bar is present at the bottom left.

Figure 1. Locations of sample collection. The area of light orange in the map represents the sampled provinces. n1, number of dogs sampled for swabs; n2, number of deceased dogs from which tissue samples were collected; n3, number of serum samples. Red star, Beijing, the capital of China.

2.2 PCR amplification of samples

Primers for CPV-2, CCoV, CDV, CPIV, CHV-1, CIV, CRCoV, CAV, and CRV were listed in Table 1. Nucleic acid was extracted using the Viral Nucleic Acid Extraction Kit II (Geneaid, China), following the manufacturer’s instructions. The extracted nucleic acid served as the template for one-step RT-PCR (TransGen Biotech, China) to detect CCoV, CDV, CPIV, CIV, CRCoV, and CRV. Meanwhile, CPV-2, CHV-1, and CAV were detected using PCR with Premix Taq (Ex Taq Version 2.0 plus dye; Takara, Japan). The RT-PCR reaction volume was in 15 μL, which included 7.5 μL of 2 × One-Step Reaction Mix, 0.3 μL of One-Step Enzyme Mix, 0.75 μL of each primer (10 μM), 1.5 μL of template, and 4.2 μL of ultrapure water. The RT-PCR reaction are as follows: 45 °C for 30 min, 98 °C for 3 min, followed by 30 cycles of 95 °C for 30 s, 56 °C for 30 s, 72 °C for 60 s, and 72 °C for 10 min. The PCR reaction volume was in 15 μL, which included 7.5 μL of Premix Taq, 0.75 μL of each primer (10 μM), 1.5 μL of template, and 4.5 μL of RNase-free water. The PCR reaction included an initial denaturation step at 98 °C for 3 min followed by 30 cycles of 95 °C for 30 s, 56 °C for 30 s, 72 °C for 60 s, and 72 °C for 10 min. Negative controls (H₂O) and positive controls (virus stocks from cell culture) were included in each test. Positive controls consisted of either virus stocks from cell culture [for CDV, CPIV, and CPV-2 (2022)] or plasmid constructs containing the target gene (for CAV-1, CAV-2, CCoV, CHV-1, CIV, CRCoV, and CRV).

Table 1
www.frontiersin.org

Table 1. The PCR amplification primers of major canine viruses.

2.3 Virus neutralization and hemagglutination inhibition assays

Neutralization assay were performed to detect the neutralization antibody of CDV, CAV-1, CAV-2 and CPIV. Blood samples collected from dogs were centrifuged at 5000 rpm for 5 min and heat-inactivated at 56 °C for 30 min. Serial two-fold dilutions of the serum, starting from 1:2, were prepared and added to 96-well microtiter plates. Each dilution was pre-incubated with an equal volume of the corresponding virus strain (containing 102TCID₅₀ units) for 1 h at 37 °C. Subsequently, 2.5 × 104 Vero or MDCK cells were added to each well. The plates were then incubated at 37 °C in a humidified atmosphere containing 5% CO₂ for 4–5 days. Neutralizing antibody titers were determined using the Reed-Muench method.

Hemagglutination inhibition (HI) assays were conducted to evaluate serum antibody titers against CPV-2. Serial two-fold dilutions of serum, ranging from 1:2 to 1:4096, were prepared in 96-well V-bottom microtiter plates. Next, 8 HA units of CPV-2 were added to each well, and the plates were incubated at 37 °C for 30 min. Following this, 0.025 mL of a 1% suspension of porcine red blood cells was added to each well. The plates were then incubated at 4 °C for 90 min. The HI titer was defined as the highest serum dilution that completely inhibited hemagglutination.

2.4 Phylogenetic analysis of CPIV and CPV-2

To investigate CPIV and CPV-2 genotypes circulating in China, samples were selected for sequencing based on clear PCR band quality and geographical and temporal representation. Ocular, nasal, and anal swabs from two dogs with severe respiratory signs (paroxysmal cough and retching), diagnosed with CPIV by RT-PCR, were used for sequencing of the fusion (F) gene. The primers used were as follows: CPIV-4-F: 5′-GACATTCGTAAATACCTATGGATTC-3′, CPIV-4-R: 5′-GCTTGAAATTGATGTTATATTACATCCA-3′, CPIV-5-F: 5′-ATTCCAACAAATGTCCGGCAACT-3’, CPIV-5-R: 5′-GCCAATTGAGTGATGGTGAATCT-3′, CPIV-6-F: 5′-TGACATGTACAAATGTGTGAGTCTGCAGC-3′, CPIV-6-R: 5′-CCACGAGCAGTTCTGTTCTAGCT-3′. The sequencing procedure was performed as previously described (21). 30 samples collected from various provinces and at different time points were sequenced. The primers and sequencing method followed that have been detailed described elsewhere (23). Phylogenetic analysis of CPV-2 and CPIV were conducted by maximum likelihood method in MEGA 5.1 (bootstrap replicates = 1000). The phylogenetic tree of VP2 gene was annotated using the Interactive Tree of Life (iTOL) software,1 an online tool for the display and annotation of phylogenetic trees.

2.5 Data analysis

Statistical comparisons of prevalence by season, geographical location, age group, and immunization status were performed using the chi-square (χ2) test. A p-value <0.05 was considered statistically significant.

3 Results

3.1 Prevalence of ten viral infections in dogs

A total of 2,422 swabs and 70 tissues samples were collected from 2,492 animals in 22 provinces and screened for ten canine viral pathogens. These provinces are geographically distributed from Heilongjiang in the north to Guangdong in the south. Herein, 10 pathogens, including CPV-2, CCoV, CDV, CPIV, CHV-1, CIV, CRCoV, CAV-2, CAV-1, and CRV, were detected from 2018 to 2024. 1,236 (49.6%) dogs were tested positive for one or more pathogens, and 42.2% (522/1,236) were infected with a single virus, while 57.8% (714/1,236) had mixed infections. As shown in Figure 2, the co-infection rates are as follows: 23.6% for two viruses, 21.0% for three viruses, 4.6% for four viruses, and 8.6% for five or more viruses. The prevalence of dogs infected with one or more viruses varied significantly among provinces, ranging from 27.8 to 83.3% (Figure 3). Notably, the prevalence rate were comparatively lower in major cities such as Beijing and Shanghai. In terms of pathogen-specific prevalence, CPV-2 (30.6%, 763/2,492), CCoV (14.8%, 369/2,492), and CDV (12.4%, 309/2,492) were the most frequently detected, followed by CPIV (5.7%, 143/2,492), CHV-1 (5.6%, 139/2,492), CIV (4.9%, 122/2,492), CRCoV (3.0%, 75/2,492), CAV-2 (2.5%, 62/2,492), CAV-1 (2.3%, 57/2,492), and CRV (0.7%, 17/2,492) (Figure 4).

Figure 2
Donut chart showing percentages of viral infections: 42.2% single infection in blue, 23.6% two viral co-infections in purple, 21.0% three viral co-infections in orange, 4.6% four in pink, and 8.6% five or more in red.

Figure 2. Infection patterns of dog viral diseases.

Figure 3
Map of China showing the geographic distribution of virus prevalence rates in dogs. Regions are shaded to indicate the number of samples collected, ranging from 1-50 to 401-500. Red circles represent prevalence rates, with sizes indicating percentages from 21%-30% to over 70%. A legend explains the color and size coding.

Figure 3. Prevalence rates of virus in dogs across China in 2018–2024. Provinces with sampling points marked green, and the sampling quantity is reflected by the color depth. The symbol size of red dots was used to describe the size of prevalence.

Figure 4
Bar chart showing positive rates of various viruses. CPV has the highest rate at 30.6%, followed by CCoV at 14.8%, CDV at 12.4%, CPIV at 5.7%, CHV-1 at 5.6%, CIV at 4.9%, CRCoV at 3.0%, CAV-2 at 2.5%, CAV-1 at 2.3%, and CRV at 0.7%.

Figure 4. Positive rates of CPV-2, CCoV, CDV, CPIV, CHV-1, CIV, CRCoV, CAV-2, CAV-1 and CRV of dogs in China during 2018–2024.

3.2 Seasonality of ten viral infections

The present study used statistical comparisons of prevalence by season, geographical location, age, and immunization status. The exposure rates of CPV-2, CCoV, CDV, CPIV, CHV-1, CIV, CRCoV, CAV-2, and CRV were significantly associated with season (Tables 2, 3). For CAV-1, there was no significant difference in the exposure rates of different seasons. The prevalence of CCoV (21.6%), CPIV (13.5%), CIV (14.0%), CAV-2 (6.1%), and CRV (1.8%) in winter (December to February) was higher than in spring (March to May), summer (June to August), and autumn (September to November). In contrast, the prevalence of CDV (16.4%) and CHV-1 (7.7%) was higher in spring than in winter, summer, and autumn. CRCoV (4.4%) was more frequently detected in autumn. For CPV-2, the prevalence in spring (38.8%) and winter (38.6%) was higher than in summer (25.8%) and autumn (20.6%).

Table 2
www.frontiersin.org

Table 2. Prevalence of main canine viruses infection in different categories.

Table 3
www.frontiersin.org

Table 3. Chi-square analysis of factors associated with prevalence of canine viral infections.

3.3 Correlation between geographical location and ten viral infections

In the 1,159 dogs from South China, the prevalence of CPV-2, CCoV, CDV, CPIV, CHV-1, CIV, CRCoV, CAV-2, CAV-1, and CRV was 35.4, 12.2, 10.9, 5.6, 2.6, 3.9, 2.8, 1.4, 0.5, and 0.6%, respectively. In contrast, in North China, the prevalence was 26.5, 17.1, 13.7, 5.9, 8.2, 5.8, 3.2, 3.5, 3.8, and 0.8%, respectively (Table 2). The positive rates of CCoV, CDV, CHV-1, CIV, CAV-2, and CAV-1 in dogs from North China were significantly higher than those from South China. Conversely, the CPV-2 positive rate was significantly higher in dogs from South China than those from North China. No significant differences were found in the positive rates of CPIV, CRCoV, and CRV between South and North China (Table 3).

3.4 Correlations between the age of dogs and ten viral infections

To assess the rate of pathogen detection in relation to age, the dog population was divided into three categories: <6 months, 6–12 months, and >1 year old. There are detailed age records for 1,081 dogs, of which 685 under 6 months old, 129 between 6 and 12 months old, and 267 over 12 months old (Table 2). Young dogs (aged <6 months) were more commonly infected with CPV-2, CCoV, CDV, CPIV, CHV-1, and CRCoV compared to the other age groups. No significant association was found between age and the detection of CIV, CAV-2, CAV-1, or CRV (Table 3). The positive detection of CRV was observed exclusively in dogs aged <6 months.

3.5 Correlation between dog vaccination and ten viral infections

In China, commercially available vaccines for dogs typically include antigens for CDV, CPV-2, CAV, CPIV, and CCoV. Therefore, our analysis of the correlation between pathogen prevalence and immunization status was limited to these five viruses. The immunization status of 546 dogs was documented in detail, with 417 dogs having been vaccinated and 129 that never received vaccination. The positive rates of CPV-2, CCoV, CDV, CPIV, CAV-2, and CAV-1 in unvaccinated dogs were 65.9, 7.8, 9.3, 4.7, 5.4, and 1.6%, respectively. Meanwhile, the rates in vaccinated dogs were 20.1, 4.3, 2.2, 2.4, 4.8, and 0.7% (Table 2). The positive rates for CPV-2 and CDV in unvaccinated dogs were significantly higher than those in vaccinated dogs. There was no significant difference in the positive rate of CCoV, CPIV, CAV-2, and CAV-1 between vaccinated dogs and unvaccinated dogs (Table 3).

3.6 Antibody detection results for CDV, CPV-2, CAV-1, CAV-2, and CPIV in canine serum

504 serum samples of dogs were screened for antibodies against CPV-2, CDV, CAV-1, CAV-2, and CPIV. Antibodies against CPV-2 were detected by HI assay. CDV, CAV-1, CAV-2 and CPIV antibodies were detected by virus neutralization assay. The protective titers for CPV-2, CDV, CAV-1, CAV-2 and CPIV were 1:80, 1:32, 1:16, 1:16, and 1:16, respectively (24, 25). Of the 504 serum samples, 398 serum samples of dogs were vaccinated with modified-live CDV- CPV-2- CAV-2-CPIVvaccine, 15 serum samples of dogs have not been vaccinated, and the vaccination status of 91 serum samples were unknown. As shown in Table 4, the protective rate of CPV-2, CDV, CAV-1, CAV-2 and CPIV were 76.9% (306/398), 72.1% (287/398), 84.4% (336/398), 85.7% (341/398) and 49.0% (195/398) for the dogs had been vaccinated. Seroprevalence in unvaccinated dogs were 93.3% (14/15), 86.7% (13/15), 33.3% (5/15), 33.3% (5/15) and 53.3% (8/15) for CPV-2, CDV, CAV-1, CAV-2 and CPIV, respectively, (Table 4).

Table 4
www.frontiersin.org

Table 4. The seroprotective rate of CPV-2, CDV, CAV-1, CAV-2 and CPIV in vaccinated and unvaccinated dogs.

3.7 Phylogenetic analysis of CPV-2 and CPIV

To identify the genotype of CPV-2, the VP2 gene was sequenced in samples from 30 dogs. As shown in Figure 5, 24 CPVs were typed as CPV-2c genotype, 2 as new CPV-2a genotype, 2 as feline panleukopenia virus (FPV) and 2 as CPV-2 genotype (vaccine strain). CPV-2c was the most common genotype in the tested samples, accounting for 80.0% of 30 samples. New CPV-2a strains remained detectable at a frequency of 6.7%, whereas CPV-2b and the new CPV-2b variant were absent. Two samples identified as CPV-2 genotype also tested positive for CCoV, suggesting viral shedding after vaccination. Notably, two strains were identified as FPV, characterized by the signature residues 80Lys, 93Lys, 103Val, 323Asp, 564Asn, and 568Ala (25). All VP2 gene sequences have been deposited in GenBank under accession numbers PX392192 to PX392221.

Figure 5
Circular phylogenetic tree diagram displaying the relationships among various CPV and related virus strains. Different colored sections represent distinct groups: CPV-2c (pink), new CPV-2a (light green), new CPV-2b (yellow), CPV-2b (red), CPV-2a (green), CPV-2 (blue), FPV (purple), and MEV (orange). Strain names and identifiers follow the branches. Red dots indicate CPVs in this study. Tree scale is 0.01.

Figure 5. Phylogenetic tree of CPV-2 based on VP2 gene. Red circles indicate CPVs in this study.

The F genes of currently circulating CPIV strains in China were sequenced and analyzed. The results showed that two CPIV strains were phylogenetically distant from strains circulating in the United States and the United Kingdom, yet clustered within the same clade as CPIV strains from Thailand, South Korea, and China (Figure 6). Unique amino acids of CPIVs in the distinct clade were observed at V104A, R237E, V290A, R299Q, I428V for F protein. The results revealed that these amino acids may be specific sites of canine-derived PIV. The F gene sequences have been deposited in GenBank under accession numbers PX380460 and PX380461.

Figure 6
Phylogenetic tree diagram illustrating genetic relationships among various animal species, including humans, dogs, pigs, and other mammals. Branch labels include codes representing specific samples, locations, and years, such as

Figure 6. Phylogenetic analysis of CPIVs based on F gene sequences. Red circles indicate CPIVs in this study.

4 Discussion

To understand viral infections in dogs in China, the present study determined the prevalence of ten pathogens, including CPV-2, CCoV, CDV, CPIV, CHV-1, CIV, CRCoV, CAV-2, CAV-1, and CRV. Recent epidemiological studies have provided data on infection rates and epidemic characteristics of various viruses in the region. However, a larger sample size is needed to minimize sampling error and increase the reliability of these findings. Thus, 2,492 dog samples from 22 provinces were investigated between 2018 and 2024. Of these, 49.6% (1,236/2,492) percentage of dogs were positive for one or more of the ten pathogens, and 57.8% (714/1,236) of dogs were mixed infections. Three or more simultaneous infections occur at a rate of 34.1%. The high prevalence of co-infection may increase disease severity and highlights the complexity of the canine viral infection in China (26, 27). CPV-2 and CCoV are common, globally distributed infections in dogs and pose significant threats to wildlife (2, 28), and they are both significant enteric pathogens primarily causing diarrhea (29, 30). Analysis of 2,492 samples revealed a high prevalence of CPV-2 (30.6%) and CCoV (14.8%), consistent with previously reported ranges in China of 5.9 to 74.1% for CPV-2 (29, 3133), and 8.43 to 33% for CCoV (3436). Canine infectious respiratory disease complex is associated with several viruses, including CDV, CPIV, CHV-1, CIV, CRCoV, and CAV-2. Among these, the prevalence of CDV in this study (12.4%) was the highest, aligning with rates previously reported in other Chinese cities that ranged from 10.0 to 24.9% (3739). While the prevalence of CPIV and CRCoV in our study was lower than previously reported in China (34, 40, 41). This lower prevalence may reflect regional or temporal variations. Notably, CHV-1 and CRV prevalence in China have not been previously reported, our findings contribute to establishing a more comprehensive epidemiological dataset. Differences in prevalence are likely influenced by sample background and geographical location. Therefore, including samples from multiple regions with varied backgrounds is essential to improve the accuracy of future studies.

The survey of canine samples revealed correlations between prevalence and factors such as season, age, and geographical location. A distinct seasonal pattern was observed. Gastrointestinal pathogens such as CPV peaked in spring and winter. Whereas respiratory pathogens like CPIV, CIV, and CAV-2 were more prevalent in winter. This trend is likely attributable to cold exposure, which has been shown to impair the innate immune defenses of the upper respiratory tract mucosa, thereby reducing barriers to microbial invasion and facilitating pathogen entry (42). Geographically, CPV-2 showed a higher prevalence in southern China, likely due to the warm and humid climate that facilitates viral persistence in the environment. In comparison, higher prevalence rates of CCoV, CDV, CHV-1, CIV, CAV-2, and CAV-1, were observed in northern China. The cold and dry conditions in northern China may enhance the environmental stability and transmission of these viruses. These findings suggest that climatic conditions play a critical role in shaping the epidemiological patterns of canine viral infections in China. Moreover, rising temperatures, increased evaporation, and altered precipitation patterns associated with global warming (43) may influence the environmental persistence and seasonal transmission of several canine viruses in China. Long-term surveillance is therefore crucial to monitor these potential shifts.

The age distribution of canine viral infections in China shows distinct patterns, with variations observed across different pathogens. The highest prevalence rates were found in dogs younger than 6 months for CPV-2, CCoV, CDV, CPIV, CHV-1, and CRCoV. This trend likely reflects the immature immune systems of puppies and the decline of maternal antibodies, which may not provide adequate protection against these pathogens (44). Understanding these age-related differences in viral prevalence is essential for developing targeted vaccination and prevention strategies, with particular emphasis on high-risk age groups for specific pathogens.

The relationship between immunization status and the prevalence of major canine viruses in China is noteworthy. Vaccination significantly reduced the prevalence of CPV-2 and CDV. However, CCoV, CPIV, CAV-2, and CAV-1 showed no significant differences in prevalence between vaccinated and unvaccinated dogs. For CPIV, the seroprotection rate in vaccinated dogs was 49.0%, demonstrating suboptimal immunogenicity of the CPIV vaccine component. Sequencing of the CPIV F gene from two dogs revealed that the strains clustered more closely with isolates from Thailand and South Korea, rather than with strains from the United States and the United Kingdom, which form the basis of the vaccines currently used in China. Distinct amino acid substitutions were identified, suggesting the emergence of a potential Asian lineage.

For CPV, CPV-2c genotype was the most common genotype in this study, which aligns with the increasing prevalence of CPV-2c genotype in China in recent years (from 22.0% in 2015–2016 to 89.83% in 2020–2023) (23, 45). The vaccine strains of CPV-2 used in China are CPV-2 genotype, which may account for the high prevalence of CPV-2 in China. Notably, FPV was also detected in two dogs—one with diarrhea and another with diarrhea and vomiting, the latter also positive for CCoV, which supporting previous reports of FPV in Dogs from Egypt (46), Pakistan (47), Vietnam (48), Thailand (49) and China (50). These molecular differences may contribute to the reduced protective efficacy observed in vaccinated dogs and underscore the urgent need to update CPIV and CPV vaccine strains in China.

Several limitations should be acknowledged. First, the assessment of vaccine efficacy was limited to five viruses (CDV, CPV-2, CAV, CPIV, and CCoV) as these represent the only antigens included in standard canine vaccines in China. Consequently, associations between vaccination status and infections with other pathogens—such as CHV-1, CIV, CRCoV, and CRV—were not evaluated. Second, vaccination records were unavailable for 1,946 of 2,492 dogs (78.1%), resulting in an unbalanced comparison (Table 2) may overestimate vaccine effectiveness if animals lacking records were more likely to be unvaccinated. Third, missing age data for 54% of the cohort limited the ability to detect age-specific differences, particularly for viruses with low prevalence, such as CRV.

5 Conclusion

This study offers comprehensive data on the prevalence and distribution of ten canine viral pathogens in China from 2018 to 2024. The high prevalence of CPV-2, CCoV, and CDV, along with significant seasonal and geographical variations, underscores the complexity of canine viral infections. The differences in prevalence between vaccinated and unvaccinated dogs, genetic mutations in prevalent strains and the low seroprotective rate in vaccinated dogs highlight the importance of vaccination, while also pointing to potential limitations in the effectiveness of current vaccines. Collectively, our findings emphasize the need to improve immunization strategies and develop new vaccines to address the evolving epidemiological patterns of canine viral infections in China.

Data availability statement

The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/supplementary material.

Ethics statement

The animal studies were approved by National Research Center for Veterinary Medicine. The studies were conducted in accordance with the local legislation and institutional requirements. Written informed consent was obtained from the owners for the participation of their animals in this study.

Author contributions

CL: Methodology, Investigation, Writing – original draft. YC: Data curation, Formal analysis, Writing – original draft. NC: Investigation, Data curation, Writing – review & editing. YY: Validation, Writing – review & editing. HD: Resources, Writing – review & editing. HW: Formal analysis, Writing – review & editing. YL: Project administration, Resources, Writing – review & editing. KT: Conceptualization, Resources, Supervision, Writing – review & editing. XX: Conceptualization, Supervision, Writing – review & editing.

Funding

The author(s) declared that financial support was not received for this work and/or its publication.

Acknowledgments

The authors are thankful to Chunyan Sun (Guaiguai Pet Hospital, Tianjin) for the help in sample collection.

Conflict of interest

CL, YC, NC, YY, HD, HW, YL, and KT were employed by Luoyang Huizhong Biotechnology Co. Ltd.

The remaining author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Generative AI statement

The author(s) declared that Generative AI was not used in the creation of this manuscript.

Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Footnotes

References

1. Gui, LQ, Wu, XH, Shi, SL, Liu, CC, Li, MT, Ge, XL, et al. First report of the molecular prevalence of trichomonads from oral cavities in household dogs and cats in East China. Acta Parasitol. (2025) 70:136. doi: 10.1007/s11686-025-01077-0,

PubMed Abstract | Crossref Full Text | Google Scholar

2. Kimpston, CN, Hatke, AL, Castelli, B, Otto, N, Tiffin, HS, Machtinger, ET, et al. High prevalence of antibodies against canine parvovirus and canine distemper virus among coyotes and foxes from pennsylvania: implications for the intersection of companion animals and wildlife. Microbiol Spectr. (2022) 10:e0253221. doi: 10.1128/spectrum.02532-21,

PubMed Abstract | Crossref Full Text | Google Scholar

3. Mosallanejad, B, Shapouri, MRS, Avizeh, R, and Pourmahdi, M. Antigenic detection of canine rotavirus group A in diarrheic dogs in Ahvaz district, southwestern Iran. Comp Clin Pathol. (2015) 24:899–902. doi: 10.1007/s00580-014-2005-8,

PubMed Abstract | Crossref Full Text | Google Scholar

4. Fu, Y, Sun, J, Lian, S, Deng, X, Zhang, L, Shao, J, et al. Immunogenicity of an inactivated canine adenovirus type 1 vaccine for foxes. Front Vet Sci. (2022) 9:678671. doi: 10.3389/fvets.2022.678671,

PubMed Abstract | Crossref Full Text | Google Scholar

5. Zhu, Y, Xu, J, Lian, S, Zhang, R, Hou, J, Wang, M, et al. Difference analysis between canine adenovirus types 1 and 2. Front Cell Infect Microbiol. (2022) 12:854876. doi: 10.3389/fcimb.2022.854876,

PubMed Abstract | Crossref Full Text | Google Scholar

6. Ramidi, A, Ganji, VK, Buddala, B, Yella, NR, Manthani, GP, and Putty, K. E3 gene-based genetic characterization of canine adenovirus-2 isolated from cases of canine gastroenteritis in india revealed a novel group of the virus. Intervirology. (2019) 62:216–21. doi: 10.1159/000507329,

PubMed Abstract | Crossref Full Text | Google Scholar

7. Decaro, N, and Buonavoglia, C. An update on canine coronaviruses: viral evolution and pathobiology. Vet Microbiol. (2008) 132:221–34. doi: 10.1016/j.vetmic.2008.06.007,

PubMed Abstract | Crossref Full Text | Google Scholar

8. Deng, X, Zhang, J, Su, J, Liu, H, Cong, Y, Zhang, L, et al. A multiplex PCR method for the simultaneous detection of three viruses associated with canine viral enteric infections. Arch Virol. (2018) 163:2133–8. doi: 10.1007/s00705-018-3828-4,

PubMed Abstract | Crossref Full Text | Google Scholar

9. Vijgen, L, Keyaerts, E, Moës, E, Thoelen, I, Wollants, E, Lemey, P, et al. Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event. J Virol. (2005) 79:1595–604. doi: 10.1128/jvi.79.3.1595-1604.2005,

PubMed Abstract | Crossref Full Text | Google Scholar

10. De Luca, E, Álvarez-Narváez, S, Baptista, RP, Maboni, G, Blas-Machado, U, and Sanchez, S. Epidemiologic investigation and genetic characterization of canine respiratory coronavirus in the Southeastern United States. J Vet Diagn Invest. (2024) 36:46–55. doi: 10.1177/10406387231213662,

PubMed Abstract | Crossref Full Text | Google Scholar

11. Cargnelutti, JF, Masuda, EK, Neuls, MG, Weiblen, R, and Flores, EF. Outbreaks of canid herpesvirus 1 disease in puppies in southern Brazil. Veterin Bras. (2015) 35:557–61. doi: 10.1590/S0100-736X2015000600012

Crossref Full Text | Google Scholar

12. Chen, Z, Xu, P, Salyards, GW, Harvey, SB, Rada, B, Fu, ZF, et al. Evaluating a parainfluenza virus 5-based vaccine in a host with pre-existing immunity against parainfluenza virus 5. PLoS One. (2012) 7:e50144. doi: 10.1371/journal.pone.0050144,

PubMed Abstract | Crossref Full Text | Google Scholar

13. Ellis, JA, and Krakowka, GS. A review of canine parainfluenza virus infection in dogs. J Am Vet Med Assoc. (2012) 240:273–84. doi: 10.2460/javma.240.3.273

Crossref Full Text | Google Scholar

14. Quan, SF, Witten, ML, Grad, R, Ray, CG, and Lemen, RJ. Changes in lung mechanics and histamine responsiveness after sequential canine adenovirus 2 and canine parainfluenza 2 virus infection in beagle puppies. Pediatr Pulmonol. (1991) 10:236–43. doi: 10.1002/ppul.1950100403,

PubMed Abstract | Crossref Full Text | Google Scholar

15. Leung, C, King, AN, Barker, PRA, Alshallal, AD, Lee, JY, and Su, L. Global seroprevalence and prevalence of infection of influenza in dogs (Canis Familiaris): a systematic review and meta-analysis. Rev Med Virol. (2024) 34:e2542. doi: 10.1002/rmv.2542,

PubMed Abstract | Crossref Full Text | Google Scholar

16. Yoon, SW, Webby, RJ, and Webster, RG. Evolution and ecology of influenza a viruses. Curr Top Microbiol Immunol. (2014) 385:359–75. doi: 10.1007/82_2014_396,

PubMed Abstract | Crossref Full Text | Google Scholar

17. Li, Y, Zhang, X, Liu, Y, Feng, Y, Wang, T, Ge, Y, et al. Characterization of canine influenza virus a (H3N2) circulating in dogs in China from 2016 to 2018. Viruses. (2021) 13:2279. doi: 10.3390/v13112279,

PubMed Abstract | Crossref Full Text | Google Scholar

18. Lee, YN, Lee, DH, Park, JK, Yuk, SS, Kwon, JH, Nahm, SS, et al. Experimental infection and natural contact exposure of ferrets with canine influenza virus (H3N2). J Gen Virol. (2013) 94:293–7. doi: 10.1099/vir.0.042473-0,

PubMed Abstract | Crossref Full Text | Google Scholar

19. Day, MJ, Carey, S, Clercx, C, Kohn, B, MarsilIo, F, Thiry, E, et al. Aetiology of canine infectious respiratory disease complex and prevalence of its pathogens in Europe. J Comp Pathol. (2020) 176:86–108. doi: 10.1016/j.jcpa.2020.02.005,

PubMed Abstract | Crossref Full Text | Google Scholar

20. Liu, Y, Liu, C, Liu, W, Wu, H, Ding, H, Cao, Y, et al. Isolation and sequence analysis of the complete H gene of canine distemper virus from domestic dogs in Henan Province, China. Arch Virol. (2019) 164:2153–8. doi: 10.1007/s00705-019-04298-7,

PubMed Abstract | Crossref Full Text | Google Scholar

21. Liu, C, Li, X, Zhang, J, Yang, L, Li, F, Deng, J, et al. Isolation and genomic characterization of a canine parainfluenza virus type 5 strain in China. Arch Virol. (2017) 162:2337–44. doi: 10.1007/s00705-017-3387-0,

PubMed Abstract | Crossref Full Text | Google Scholar

22. Zhou, L, Wu, H, Du, M, Song, H, Huo, N, Chen, X, et al. A canine-derived chimeric antibody with high neutralizing activity against canine parvovirus-2. AMB Express. (2022) 12:76. doi: 10.1186/s13568-022-01416-8,

PubMed Abstract | Crossref Full Text | Google Scholar

23. Wu, H, Li, X, Wang, L, Liu, Y, and Tian, K. Molecular epidemiological survey of canine parvovirus in domestic dogs in four provinces, China. Virus. (2018) 29:113–7. doi: 10.1007/s13337-018-0427-7,

PubMed Abstract | Crossref Full Text | Google Scholar

24. Mouzin, DE, Lorenzen, MJ, Haworth, JD, and King, VL. Duration of serologic response to five viral antigens in dogs. J Am Vet Med Assoc. (2004) 224:55–60. doi: 10.2460/javma.2004.224.55,

PubMed Abstract | Crossref Full Text | Google Scholar

25. Decaro, N, and Buonavoglia, C. Canine parvovirus—a review of epidemiological and diagnostic aspects, with emphasis on type 2c. Vet Microbiol. (2012) 155:1–12. doi: 10.1016/j.vetmic.2011.09.007,

PubMed Abstract | Crossref Full Text | Google Scholar

26. Maboni, G, Seguel, M, Lorton, A, Berghaus, R, and Sanchez, S. Canine infectious respiratory disease: new insights into the etiology and epidemiology of associated pathogens. PLoS One. (2019) 14:e0215817. doi: 10.1371/journal.pone.0215817,

PubMed Abstract | Crossref Full Text | Google Scholar

27. Erles, K, Dubovi, EJ, Brooks, HW, and Brownlie, J. Longitudinal study of viruses associated with canine infectious respiratory disease. J Clin Microbiol. (2004) 42:4524–9. doi: 10.1128/jcm.42.10.4524-4529.2004,

PubMed Abstract | Crossref Full Text | Google Scholar

28. Azevedo, LS, Costa, FF, Ghani, MBA, Viana, E, França, Y, Medeiros, RS, et al. Full genotype characterization of Brazilian canine G3P[3] strains during a 10-year survey (2012–2021) of rotavirus infection in domestic dogs and cats. Arch Virol. (2023) 168:176. doi: 10.1007/s00705-023-05807-5,

PubMed Abstract | Crossref Full Text | Google Scholar

29. Zhao, H, Wang, J, Jiang, Y, Cheng, Y, Lin, P, Zhu, H, et al. Typing of canine parvovirus strains circulating in North-East China. Transbound Emerg Dis. (2017) 64:495–503. doi: 10.1111/tbed.12390,

PubMed Abstract | Crossref Full Text | Google Scholar

30. Tennant, BJ, Gaskell, RM, Kelly, DF, Carter, SD, and Gaskell, CJ. Canine coronavirus infection in the dog following oronasal inoculation. Res Vet Sci. (1991) 51:11–8. doi: 10.1016/0034-5288(91)90023-h,

PubMed Abstract | Crossref Full Text | Google Scholar

31. Dong, B, Zhang, G, Zhang, J, Bai, J, and Lin, W. A Systematic literature review and meta-analysis of characterization of canine parvoviruses 2 prevalent in Mainland China. Virol J. (2020) 17:195. doi: 10.1186/s12985-020-01462-3,

PubMed Abstract | Crossref Full Text | Google Scholar

32. Zhao, Z, Liu, H, Ding, K, Peng, C, Xue, Q, Yu, Z, et al. Occurrence of canine parvovirus in dogs from Henan Province of China in 2009–2014. BMC Vet Res. (2016) 12:138. doi: 10.1186/s12917-016-0753-1,

PubMed Abstract | Crossref Full Text | Google Scholar

33. Wang, J, Lin, P, Zhao, H, Cheng, Y, Jiang, Z, Zhu, H, et al. Continuing evolution of canine parvovirus in China: isolation of novel variants with an ALa5Gly mutation in the VP2 protein. Infect Genet Evol. (2016) 38:73–8. doi: 10.1016/j.meegid.2015.12.009,

PubMed Abstract | Crossref Full Text | Google Scholar

34. Shi, K, Shi, Y, Shi, Y, Long, F, Yin, Y, Pan, Y, et al. Establishment of a quadruplex RT-qPCR for the detection of canine coronavirus, canine respiratory Coronavirus, canine adenovirus type 2, and canine norovirus. Pathogens. (2024) 13:1054. doi: 10.3390/pathogens13121054,

PubMed Abstract | Crossref Full Text | Google Scholar

35. Shi, K, Shi, Y, Shi, Y, Pan, Y, Feng, S, Feng, Z, et al. Genetic and evolutionary analysis of canine coronavirus in Guangxi Province, China, for 2021–2024. Vet Sci. (2024) 11:456. doi: 10.3390/vetsci11100456,

PubMed Abstract | Crossref Full Text | Google Scholar

36. Dong, B, Zhang, X, Bai, J, Zhang, G, Li, C, and Lin, W. Epidemiological investigation of canine coronavirus infection in chinese domestic dogs: a systematic review and data synthesis. Prev Vet Med. (2022) 209:105792. doi: 10.1016/j.prevetmed.2022.105792,

PubMed Abstract | Crossref Full Text | Google Scholar

37. Li, C, Guo, D, Wu, R, Kong, F, Zhai, J, Yuan, D, et al. Molecular surveillance of canine distemper virus in diarrhoetic puppies in Northeast China from May 2014 to April 2015. J Vet Med Sci. (2018) 80:1029–33. doi: 10.1292/jvms.17-0559,

PubMed Abstract | Crossref Full Text | Google Scholar

38. Wang, J, Luo, Y, Liang, L, Li, J, and Cui, S. A fast and simple one-step duplex PCR assay for canine distemper virus (CDV) and canine coronavirus (CCoV) detection. Arch Virol. (2018) 163:3345–9. doi: 10.1007/s00705-018-3982-8,

PubMed Abstract | Crossref Full Text | Google Scholar

39. Dong, B, Zhang, X, Wang, J, Zhang, G, Li, C, Wei, L, et al. A meta-analysis of cross-sectional studies on the frequency and risk factors associated with canine morbillivirus infection in China. Microb Pathog. (2021) 161:105258. doi: 10.1016/j.micpath.2021.105258,

PubMed Abstract | Crossref Full Text | Google Scholar

40. Zhou, H, Li, H, Sun, X, Lin, J, Zhang, C, Zhao, J, et al. Rapid diagnosis of canine respiratory coronavirus, canine influenza virus, canine distemper virus and canine parainfluenza virus with a Taqman probe-based multiplex real-time PCR. J Virol Methods. (2024) 328:114960. doi: 10.1016/j.jviromet.2024.114960,

PubMed Abstract | Crossref Full Text | Google Scholar

41. Lu, S, Wang, Y, Chen, Y, Wu, B, Qin, K, Zhao, J, et al. Discovery of a novel canine respiratory coronavirus support genetic recombination among betacoronavirus1. Virus Res. (2017) 237:7–13. doi: 10.1016/j.virusres.2017.05.006,

PubMed Abstract | Crossref Full Text | Google Scholar

42. Eccles, R. Acute cooling of the body surface and the common cold. Rhinology. (2002) 40:109–14. Available online at: https://www.rhinologyjournal.com/Abstract.php?id=183

PubMed Abstract | Google Scholar

43. Han, L, Li, Y, Zou, Y, Gao, X, Gu, Y, and Wang, L. Relationship between lake salinity and the climatic gradient in Northeastern China and its implications for studying climate change. Sci Total Environ. (2022) 805:150403. doi: 10.1016/j.scitotenv.2021.150403,

PubMed Abstract | Crossref Full Text | Google Scholar

44. Shams, F, and Pourtaghi, H. Effect of maternally derived antibodies on two commercial vaccines in changes of serum antibody titres against distemper in puppies. Vet Med Sci. (2023) 9:698–703. doi: 10.1002/vms3.1076,

PubMed Abstract | Crossref Full Text | Google Scholar

45. Pan, S, Man, Y, Xu, X, Ji, J, Zhang, S, Huang, H, et al. Genetic diversity and recombination analysis of canine parvoviruses prevalent in Central and Eastern China, from 2020 to 2023. Microorganisms. (2024) 12:2173. doi: 10.3390/microorganisms12112173,

PubMed Abstract | Crossref Full Text | Google Scholar

46. Diakoudi, G, Desario, C, Lanave, G, Salucci, S, Ndiana, LA, Zarea, AAK, et al. Feline panleukopenia virus in dogs from Italy and Egypt. Emerg Infect Dis. (2022) 28:1933–5. doi: 10.3201/eid2809.220388,

PubMed Abstract | Crossref Full Text | Google Scholar

47. Ahmed, N, Riaz, A, Zubair, Z, Saqib, M, Ijaz, S, Nawaz-Ul-Rehman, MS, et al. Molecular analysis of partial VP-2 gene amplified from rectal swab samples of diarrheic dogs in Pakistan confirms the circulation of canine parvovirus genetic variant CPV-2a and detects sequences of feline panleukopenia virus (FPV). Virol J. (2018) 15:45. doi: 10.1186/s12985-018-0958-y,

PubMed Abstract | Crossref Full Text | Google Scholar

48. Hoang, M, Wu, CN, Lin, CF, Nguyen, HTT, Le, VP, Chiou, MT, et al. Genetic characterization of feline panleukopenia virus from dogs in Vietnam reveals a unique Thr101 mutation in Vp2. PeerJ. (2020) 8:e9752. doi: 10.7717/peerj.9752,

PubMed Abstract | Crossref Full Text | Google Scholar

49. Inthong, N, Kaewmongkol, S, Meekhanon, N, Sirinarumitr, K, and Sirinarumitr, T. Dynamic evolution of canine parvovirus in Thailand. Vet World. (2020) 13:245–55. doi: 10.14202/vetworld.2020.245-255,

PubMed Abstract | Crossref Full Text | Google Scholar

50. Chen, B, Zhang, X, Zhu, J, Liao, L, and Bao, E. Molecular epidemiological survey of canine parvovirus circulating in China from 2014 to 2019. Pathogens. (2021) 10:588. doi: 10.3390/pathogens10050588,

PubMed Abstract | Crossref Full Text | Google Scholar

Keywords: Canine viral infectious disease, molecular detection, phylogenetic analysis, prevalence, serological

Citation: Liu C, Chen Y, Cui N, Yang Y, Ding H, Wu H, Liu Y, Tian K and Xu X (2026) Molecular detection of canine viral infectious diseases in China: an investigation from 2018 to 2024. Front. Vet. Sci. 12:1709294. doi: 10.3389/fvets.2025.1709294

Received: 22 September 2025; Revised: 06 December 2025; Accepted: 09 December 2025;
Published: 06 January 2026.

Edited by:

Veasna Duong, Institut Pasteur du Cambodge, Cambodia

Reviewed by:

Francesco Mira, Istituto Zooprofilattico Sperimentale della Sicilia “A. Mirri”, Italy
Mohamed Nayel, University of Sadat City, Egypt
Mariana Nilsson, State University of Campinas, Brazil

Copyright © 2026 Liu, Chen, Cui, Yang, Ding, Wu, Liu, Tian and Xu. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Yuxiu Liu, cWluZ3Fpbmd5dXhpdTFAMTYzLmNvbQ==; Kegong Tian, dmV0dmFjQDEyNi5jb20=; Xingang Xu, dGlnZXIyMDAzQG53c3VhZi5lZHUuY24=

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.