REVIEW article

Front. Cell Dev. Biol., 11 June 2021

Sec. Molecular and Cellular Oncology

Volume 9 - 2021 | https://doi.org/10.3389/fcell.2021.690522

X-Inactive-Specific Transcript: Review of Its Functions in the Carcinogenesis

  • 1. Department of Medical Genetics, Shahid Beheshti University of Medical Sciences, Tehran, Iran

  • 2. Department of Genetics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran

  • 3. Urology and Nephrology Research Center, Shahid Beheshti University of Medical Sciences, Tehran, Iran

  • 4. Skull Base Research Center, Loghman Hakim Hospital, Shahid Beheshti University of Medical Sciences, Tehran, Iran

Abstract

X-inactive–specific transcript (XIST) is one of the firstly discovered long non-coding RNAs with prominent roles in the process of X inactivation. Moreover, this transcript contributes in the carcinogenic process in different tissues. In addition to interacting with chromatin modifying molecules, XIST can be served as a molecular sponge for miRNAs to modulate expression of miRNA targets. Most of the studies have indicated an oncogenic role for XIST. However, in prostate cancer, a single study has indicated a tumor suppressor role for this lncRNA. Similar result has been reported for XIST in oral squamous cell carcinoma. In hepatocellular carcinoma, breast cancer, ovarian cancer, osteosarcoma, and renal cell carcinoma, different studies have reported inconsistent results. In the present manuscript, we review function of XIST in the carcinogenesis.

Introduction

X-inactive–specific transcript (XIST) RNA is among the firstly discovered long non-coding RNAs (lncRNAs) in humans (Brown et al., 1992). The gene coding this lncRNA has at least eight exons and spans an area of about 17 kb on the X chromosome, in a region containing the X inactivation center (Brown et al., 1992). XIST RNA is primarily localized in the nucleus to a location not discriminable from the X inactivation-associated Barr body (Brown et al., 1992). The first important function attributed to XIST has been related to the process of X inactivation during which XIST induces gene silencing through recruitment of several chromatin modifying molecules (Loda and Heard, 2019). The indispensable role of Xist in X inactivation has been proved by targeted mutagenesis and transgenic experiments in mice showing skewing of this process following deletion of the Xist gene (Penny et al., 1996; Marahrens et al., 1997). Several molecules have been identified to interact with XIST to contribute in chromosome-wide gene silencing. SPEN, RBM15, WTAP, hnRNP K, and LBR are among molecules that participate in this process through interplay with XIST (Chu et al., 2015; McHugh et al., 2015). In addition, XIST has a prominent role in the carcinogenic processes. Several in vitro, in vivo, and clinical investigations have verified this aspect of XIST functions. In the present manuscript, we review function of XIST in the carcinogenesis.

Cell Line Studies

Breast Cancer

Functional impact of XIST in the breast carcinogenesis has been assessed in a number of in vitro studies. Liu et al. (2020) have reported down-regulation of XIST and UBAP1 in breast cancer cells. Forced up-regulation of XIST has attenuated proliferation, migration and invasion of these cells, and accelerated cell apoptosis. From a mechanistical point of view, XIST can interact with miR-362-5p and miR-362-5p to exert its effects. UBAP1 has been identified as miR-362-5p target, thus XIST modulates expression this protein via sponging miR-362-5p (Liu et al., 2020). Li et al. (2020d) have demonstrated down-regulation of XIST in triple negative breast cancer cells. Up-regulation of XIST has blocked cell proliferation and epithelial mesenchymal transition (EMT) while inducing apoptosis in these cell lines. miR-454 has been identified as a target of XIST in these cells (Li et al., 2020d). On the other hand, Zong et al. (2020) XIST has reported up-regulation of XIST in breast cancer cells, parallel with down-regulation of miR-125b-5p and up-regulation of NLRC5. XIST silencing has remarkably suppressed cell proliferation, migration, and invasion aptitudes of breast cancer cells. XIST has been shown to sponge miR-125b-5p and subsequently influence NLRC5 expression (Zong et al., 2020). Moreover, expression of XIST has been reported to be higher in doxorubicin-resistant breast cancer cells compared with parental cells. Furthermore, XIST up-regulation enhances cell proliferation and prohibited apoptosis of doxorubicin-treated breast cancer cells through enhancing expression of ANLN. XIST functions as a sponge for miR-200c-3p, which regulates expression of ANLN (Zhang et al., 2020). Figure 1 depicts different roles of XIST in the breast carcinogenesis.

FIGURE 1

Gastric Cancer

In gastric cancer, XIST has been shown to exert oncogenic effects. Zheng et al. (2020) have demonstrated over-expression of XIST and down-regulation of miR-337 in these cells. XIST silencing has simultaneously suppressed proliferation, invasion, and migration of gastric cancer cells. Mechanistically, XIST increases expression of JAK2 through sponging miR-337 (Zheng et al., 2020). Consistently, over-expression of XIST in gastric cancer cells has been accompanied by up-regulation of PXN while down-regulation of miR-132. Furthermore, both XIST silencing and miR-132 over-expression could inhibit gastric cancer cell proliferation and migration (Li et al., 2020a). In this kind of cancer, XIST has also been shown to promote cell cycle progression at G1/S phase and block cell apoptosis through repressing miR-497 expression and up-regulating MACC1 levels (Ma et al., 2017). XIST can also sponge miR-185 to influence expression of TGF-β1 in gastric cancer cells (Zhang et al., 2018). Figure 2 depicts the role of XIST in gastric carcinogenesis.

FIGURE 2

Colorectal Cancer

Expression of XIST has been increased in colon cancer cells. Mechanistically, XIST sponges miR-34a and increases expression of WNT1. XIST also affects expression of β-catenin, cyclinD1, c-Myc, and MMP-7 in colon cancer cells (Sun et al., 2018). Moreover, expression of this lncRNA has been up-regulated 5-Flurouracil-resitant colon cancer cells. XIST silencing has inverted resistance phenotype in these cells. XIST has been shown to promote expression of thymidylatesynthase, an enzyme which is targeted by 5-Flurouracil (Xiao et al., 2017). Another study in colon cancer cells has demonstrated over-expression of XIST and FOXK1, while down-regulation of miR-497-5p. This study has also confirmed the significance of XIST/miR-497-5p/FOXK1 in the pathogenesis of colon cancer (Wang et al., 2020b). Figure 3 depicts the downstream targets of XIST in colon cancer cells.

FIGURE 3

Pancreatic Cancer

XIST has also been up-regulated in prostate cancer cell lines where it enhances their proliferation, migration and invasion, and suppresses cell their apoptosis. These effects are exerted through sponging miR-34a-5p (Sun et al., 2018). In these cells, XIST has also interactions with miR-137 through which it regulates expression of Notch1 (Liu et al., 2020). miR-141-3p is another miRNA which has been shown to be sponged by XIST in pancreatic cancer cells. XIST enhances expression of TGF-β2 through interacting with this miRNA (Sun and Zhang, 2019). Figure 4 depicts the interaction between XIST and miRNAs as well as their targets in pancreatic cancer cells.

FIGURE 4

Bladder Cancer

In bladder cancer cells, XIST serves as a molecular sponge for miR-200c through which it enhances colony formation, self-renewal capacity and EMT in cancer stem cells -like cells (Xu et al., 2018). Another study has indicated parallel over-expressions of XIST and androgen receptor (AR) in bladder cancer cells. Mechanistically, XIST increases AR expression though sponging miR-124 (Xiong et al., 2017). Moreover, XIST can promote proliferation and metastatic ability of bladder cancer cells via modulating miR-139-5p expression and subsequent regulation of Wnt/β-catenin signaling pathway (Hu et al., 2017). Figure 5 depicts the interactions between XIST and miRNAs in bladder cancer cells.

FIGURE 5

Glioma

In glioma cells, XIST can modulate metabolism of glucose. XIST silencing has suppressed viability, migration, invasiveness, hypo-responsiveness to apoptotic stimuli, and glucose metabolism in glioblastoma. Mechanistically, XIST functions as a molecular sponge for miR-126 to subsequently regulate IRS1/PI3K/Akt pathway (Cheng et al., 2020). Another study in glioblastoma has shown the role of Steroid receptor coactivator-1 (SRC-1) in the regulation of XIST at posttranscriptional level. In fact, the impact of SRC-1 in enhancement of stemness features in glioblastoma is mediated through XIST. SRC-1 enhances expression of Kruppel-like factor 4 (KLF4) via the XIST/miR-152 axis (Gong et al., 2020). Moreover, miR-204-5p has been identified as another target of XIST in glioma cells. Interaction between XIST and miR-204-5p regulates expression of Bcl-2 (Shen et al., 2020). Figure 6 shows the interactions between XIST and miRNAs in glioma cells.

FIGURE 6

Lung Cancer

XIST has also been shown to be over-expressed in lung cancer cell lines promoting their proliferation ability through sponging miR-140. XIST silencing has repressed proliferation and enhanced apoptosis of lung cancer cells. Besides, inhibitor of apoptosis-stimulating protein of p53 (iASPP) has a prominent role in mediation of this effect (Tang et al., 2017). Expression of XIST expression has also been up-regulated in cisplatin-resistant lung cancer cells compared with the original cells. Up-regulation of this lncRNA has enhanced resistance to cisplatin through blocking apoptosis and increasing proliferation ability. These effects are mediated through sponging let-7i and regulating expression of BAG-1 (Sun et al., 2017). Figure 7 shows the interactions between XIST and miRNAs in lung cancer cells.

FIGURE 7

In addition to these types of malignancies, functional studies have verified the impact of XIST in the pathogenesis of almost all kinds of neoplasms. Supplementary Table 1 summarizes the results of in vitro studies.

Animal Studies

In line with in vitro studies, abnormal expression of XIST affects tumorigenesis in animal models of cancer. Almost all studies have indicated that up-regulation of XIST enhances tumorigenic ability of cancer cells, while its silencing has the opposite effects (Table 1). However, XIST has a tumor suppressor role in animal models of oral squamous cell carcinoma and renal cell carcinoma. Most notably, animal studies in hepatocellular carcinoma, breast cancer, ovarian cancer and osteosarcoma have indicated inconsistent results regarding the role of XIST (Table 1).

TABLE 1

Cancer typeAnimal modelsResultsReferences
Bladder cancerNOD/SCID miceΔ XIST: ↓ tumorigenesisXu et al., 2018
BALB/C nude miceΔ XIST: ↓ tumorigenesisHu et al., 2017
Nude miceΔ XIST: ↓ tumorigenesis, ↑ PD sensitivityChen et al., 2020
Nasopharyngeal carcinomaBALB/c nude miceΔ XIST: ↓ tumorigenesisCheng et al., 2018
BALB/c nude miceΔ XIST: ↓ tumorigenesisZhao et al., 2020
Nude miceΔ XIST: ↓ tumorigenesisShi et al., 2020
Laryngeal squamous cell carcinomaNude miceΔ XIST: ↓ tumorigenesisLiu et al., 2020
Oral squamous cell carcinomaNude mice↑ XIST: ↓ tumorigenesisLi et al., 2020c
Esophageal squamous cell carcinomaBABL/c nude miceΔ XIST: ↓ tumorigenesisWu et al., 2017
Gastric cancerBALB/c nude miceΔ XIST: ↓ tumorigenesisLi et al., 2020a
BALB/c-nu/nu miceΔ XIST: ↓ tumorigenesis, ↓ invasionMa et al., 2017
BABL/c athymic nude miceΔ XIST: ↓ tumorigenesis, ↓ metastasisChen et al., 2016
BALB/c-nu/nu nudeΔ XIST: ↓ tumorigenesisLi et al., 2020b
Colorectal cancerBALB/C nude miceΔ XIST: ↓ tumorigenesisSun et al., 2018
BALB/c nude miceΔ XIST: ↓ tumorigenesisWang et al., 2020b
BALB/C nude miceΔ XIST: ↓ tumorigenesisYang et al., 2020
BALB/c nude miceΔ XIST: ↑ anti-tumor effect of DOX, ↓ tumorigenesisZhuang et al., 2016
Athymic nude miceΔ XIST: ↓ tumorigenesis, ↓ metastasisChen et al., 2017
Pancreatic cancerNude miceΔ XIST: ↓ tumorigenesisSun et al., 2018
Nude miceΔ XIST: ↓ tumorigenesisLiu et al., 2020
Nude miceΔ XIST: ↓ tumorigenesisLiang et al., 2017
Hepatocellular carcinomaNude miceΔ XIST: ↓ tumorigenesisKong et al., 2018
BALB/c-nu/nu miceΔ XIST: ↓ tumorigenesisMo et al., 2017
BALB/c thymus-free nude mice↑ XIST: ↓ tumorigenesisZhang et al., 2019
Nude mice↑ XIST: ↓ tumorigenesisLin et al., 2018
Renal cell carcinomaBALB/C mice↑ XIST: ↓ tumorigenesisSun et al., 2019
Lung cancerBALB/c nude mice↑ XIST: ↑ tumorigenesis, ↑ cisplatin resistanceSun et al., 2017
Non-small cell lung cancerBABL/c athymic nude miceΔ XIST: ↓ tumorigenesisJiang et al., 2018
Nude miceΔ XIST: ↓ tumorigenesisQiu et al., 2019
BALB/c nude male miceΔ XIST: ↓ tumorigenesis, ↑ DDP chemosensitivityXu et al., 2020
BALB/c nude miceΔ XIST: ↓ tumorigenesisZhang et al., 2017
Nude miceΔ XIST: ↓ tumorigenesisZhou et al., 2019c
BALB/c nude miceΔ XIST: ↓ tumorigenesis, ↓ liver metastasisWang et al., 2019
BALB/c nude miceΔ XIST: ↓ tumorigenesisFang et al., 2016
BALB/c nude miceΔ XIST: ↓ tumorigenesis, ↓ DDP chemoresistanceTian et al., 2019
BALB/c nude miceΔ XIST: ↓ tumorigenesisJiang et al., 2020
Nude miceΔ XIST: ↓ pulmonary metastasisLi et al., 2018
Nude miceΔ XIST: ↓ tumorigenesisWang et al., 2017
Breast cancerBALB/c nude mice↑ XIST: ↓ tumorigenesisLi et al., 2020d
Nude miceΔ XIST: ↑ tumorigenesis, ↑ brain metastasis, ↑EMT, ↑ stemnessXing et al., 2018
BALB/c nu/nu miceΔ XIST: ↑ tumorigenesis, ↑ migrationZhao et al., 2020
BALB/c nude mice↑ XIST: ↓ tumorigenesisLiu et al., 2020
Ovarian cancerAthymic nude mice↑ XIST: ↓ tumorigenesis, ↑ cisplatin chemosensitivityWang et al., 2018
Nude mice↑ XIST: ↓ tumorigenesis, ↑ paclitaxel sensitivity, ↓ CD44 + /CD24-population cellsHuang et al., 2020
BALB/c mice↑ XIST: ↓ tumorigenesisGuo et al., 2021
Prostate cancerBALB/C nude mice↑ XIST: ↓ tumorigenesisDu et al., 2017
OsteosarcomaBALB/c nude mice↑ XIST: ↓ tumorigenesisZhang and Xia, 2017
BALB/C nude miceΔ XIST: ↓ tumorigenesisXu et al., 2017
BALB/c athymic nude miceΔ XIST: ↓ tumorigenesisGao et al., 2019
BALB/c nude miceΔ XIST: ↓ tumorigenesis, ↓ metastasisYang et al., 2018
GliomaBALB/c nude miceΔ XIST: ↓ tumorigenesisCheng et al., 2020
BALB/c nude miceΔ XIST: ↓ tumorigenesis, ↑ survival timeShen et al., 2020
BALB/c nude miceΔ XIST: ↓ tumorigenesis, ↓ angiogenesisCheng et al., 2017
BALB/C athymic nude miceΔ XIST: ↓ tumorigenesis, ↑ survival timeYao et al., 2015
Nude miceΔ XIST: ↓ tumorigenesisWang et al., 2020c
Thyroid cancerAthymic nude miceΔ XIST: ↓ tumorigenesisLiu et al., 2018
Acute myeloid leukemiaBALB/c nude miceΔ XIST: ↓ tumorigenesisWang et al., 2020a
RetinoblastomaBALB/c nude miceΔ XIST: ↓ tumorigenesis, ↑ VCR sensitivityYao et al., 2020
Cervical cancerAthymic BALB/c miceΔ XIST: ↓ tumorigenesis, ↓ EMTChen et al., 2019
Nude miceΔ XIST: ↓ tumorigenesisLiu et al., 2020
NeuroblastomaBALB/c nude miceΔ XIST: ↓ tumorigenesis, ↑ survival timeZhang et al., 2019
BALB/c nude miceΔ XIST: ↓ tumorigenesisYang et al., 2020
ChordomaNude miceΔ XIST: ↓ tumorigenesis, ↑ apoptosisHai et al., 2020

Outcomes of studies which evaluated function of XIST in animal models (Δ: knock down or deletion).

Human Studies

Experiments in clinical samples obtained from patients have shown that expression of XIST is principally increased in tumoral samples compared with nearby non-cancerous samples (Supplementary Table 2). However, in oral squamous cell carcinoma, its expression has been decreased (Li et al., 2020c). In hepatocellular carcinoma, most of studies have indicated its down-regulation (Chang et al., 2017; Lin et al., 2018; Zhang et al., 2019). However, few studies have reported opposite results (Mo et al., 2017; Kong et al., 2018). Similarly, different studies in breast cancer, ovarian cancer, osteosarcoma and renal cell carcinoma(Supplementary Table 2) have reported inconsistent results. Moreover, expression levels of XIST have been correlated with patients’ survival in different kinds of cancers including bladder cancer, esophageal squamous cell carcinoma, nasopharyngeal carcinoma, lung cancer, gastric cancer, colorectal cancer and breast cancer.

In nasopharyngeal carcinoma, XIST expression levels could differentiate tumoral tissues from nearby non-cancerous samples with diagnostic power of 0.813 (Song et al., 2016). In colorectal cancer, up-regulation of XIST in extracellular vesicles isolated from serum samples had an appropriate diagnostic value [Area under curve (AUC) = 0.86, sensitivity = 0.88 and specificity = 0.90]. Most notably, over-expression of XIST in serum extracellular vesicles has been associated with survival rates (Yu et al., 2020). Expression levels of XIST have also been shown to be appropriate markers for follow-up of patients with lung cancer, since they have been reduced following surgical removal of tumors. Receiver operating characteristic curves have demonstrated the ability of XIST expression levels in separation between the patients and healthy controls with an AUC value of 0.834. In addition, combination of expression levels of XIST and HIF1A-AS1 in serum samples has enhanced the diagnostic power (Tantai et al., 2015). Finally, serum levels of XIST could separate breast cancer patients from healthy controls with AUC value of 0.78 (Zhao et al., 2018). Table 2 summarizes the outcomes of studies which evaluated this aspect of XIST application in clinical settings.

TABLE 2

Cancer typeNumbers of clinical samplesDistinguish betweenArea under curveSensitivity (%)Specificity (%)References
Nasopharyngeal carcinoma (NPC)108 pairs of NPC tissues and ANTsNPC patients vs. controls0.8130.8860.795Song et al., 2016
Early gastric cancer (EGC)76 pairs of EGC tissues and ANTs and EGC plasmaEGC patients vs. controls0.7330.8460.590Lu et al., 2017
Colorectal cancer120 serum specimens from CRC responding and non-responding patients to 5FU treatmentCRC patients showing response to 5FU treatment vs. patients showing no response0.7170.7560.683Xiao et al., 2017
Serum EVs from 94 CRC patients and 41 healthy participantsCRC patients vs. healthy controls0.8640.8830.902Yu et al., 2020
Non-small cell lung cancer32 pairs of NSCLC tumor tissues and ANTs 64 serum samplesNSCLC vs. controls0.8340.7260.935Tantai et al., 2015
Breast cancer36 serum samples from breast cancer patients and 32 control healthy subjectsBreast cancer patients vs. healthy controls0.780.670.89Zhao et al., 2018
Thyroid cancer77 pairs of thyroid cancer tissue samples and ANTsThyroid cancer patients vs. healthy controls0.7360––Liu et al., 2018

Diagnostic value of XIST in cancers.

Discussion

Although XIST has been primarily identified as a transcript whichregulates X inactivation, subsequent studies have show thatthislncRNA has several regulatory roles beyond thisphysiologicalprocess. In addition to interacting with chromatin modifyingmolecules, XIST can be served as a molecularsponge for miRNAs to modulate expression of miRNA targets. miR-362-5p/UBAP1, miR-125b-5p/NLRC5, miR-200c-3p/ANLN, miR-337/JAK2, miR-132/PXN, miR-497/MACC1, miR-185/TGF-β1, miR-497-5p/FOXK1, miR-141-5p/TGF-β2, miR-152/KLF4, and let-7i/BAG-1 are among molecular cascades downstream of XIST which are involved in the carcinogenesis process.

XIST can modulate resistance to chemotherapeutic agents in a number of cancers including breast and lung cancers (Sun et al., 2017; Zhang et al., 2020). Thus, modulation of its expression might beregarded as a strategy for combatting chemoresistance of cancercells. However, tissue-specific effects of XIST in conferring resistance to chemotherapeutic agents should be considered. Most of the above-mentioned studies have indicated an oncogenic role for XIST. However, in prostate cancer, a single study has indicated a tumor suppressor role for this lncRNA (Du et al., 2017). Similar result has been reported for XIST in oral squamous cell carcinoma (Li et al., 2020c). In hepatocellular carcinoma, breast cancer, ovarian cancer, osteosarcoma and renal cell carcinoma, different studies have reported inconsistent results (Supplementary Table 2). Most notably, animal studies in hepatocellular carcinoma, breast cancer, ovarian cancer and osteosarcoma have indicated inconsistent results regarding the role of XIST. Although these discrepancies might be due to possible tissue-specific roles for XIST or differences in cell lines (particularly passage number) and animal models, future studies with larger sample sizes from different ethnic groups are needed to solve these discrepancies.

XIST has both diagnostic and prognostic values in different cancers, albeit the prognostic value of this lncRNA has been more validated. Both tissue and serum levels of XIST can be used to distinguish disease status, yet the latter source is superior regarding the non-invasive route of access. The best diagnostic power values have been reported in CRC, NSCLC, and nasopharyngeal carcinoma, respectively. However, all of these studies lack validation in independent samples. So, future studies should assess this aspect of XIST application in larger cohorts of patients.

In brief, XIST has been shown to affect carcinogenic process possibly in a tissue-specific manner. Therefore, therapeutic strategies targeting this lncRNA should consider this point to design a personalized regimen for treatment of cancer.

Statements

Author contributions

MT and SG-F wrote the draft and revised it. SD, MF, and SM collected the data and designed the tables and figures. All the authors approved submitted version.

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Supplementary material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fcell.2021.690522/full#supplementary-material

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Summary

Keywords

lncRNA, X-inactive-specific transcript, expression, biomarker, cancer

Citation

Ghafouri-Fard S, Dashti S, Farsi M, Taheri M and Mousavinejad SA (2021) X-Inactive-Specific Transcript: Review of Its Functions in the Carcinogenesis. Front. Cell Dev. Biol. 9:690522. doi: 10.3389/fcell.2021.690522

Received

03 April 2021

Accepted

13 May 2021

Published

11 June 2021

Volume

9 - 2021

Edited by

Simone Patergnani, University of Ferrara, Italy

Reviewed by

Lu Feng, Zhengzhou University, China; William K. K. Wu, Chinese University of Hong Kong, China

Updates

Copyright

*Correspondence: Mohammad Taheri, Seyed Ali Mousavinejad,

This article was submitted to Molecular and Cellular Oncology, a section of the journal Frontiers in Cell and Developmental Biology

Disclaimer

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

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