REVIEW article

Front. Pharmacol., 11 August 2022

Sec. Respiratory Pharmacology

Volume 13 - 2022 | https://doi.org/10.3389/fphar.2022.928933

Roles of exosomes and exosome-derived miRNAs in pulmonary fibrosis

  • 1. Precision Medicine Key Laboratory, Institute of Respiratory Health, West China Hospital, Sichuan University, Chengdu, Sichuan, China

  • 2. Key Laboratory of Transplantation Engineering and Immunology, Institute of Clinical Pathology, Ministry of Health, West China Hospital, Sichuan University, Chengdu, Sichuan, China

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Abstract

Pulmonary fibrosis is a chronic, progressive fibrosing interstitial lung disease of unknown etiology that leads rapidly to death. It is characterized by the replacement of healthy tissue through an altered extracellular matrix and damage to the alveolar structure. New pharmacological treatments and biomarkers are needed for pulmonary fibrosis to ensure better outcomes and earlier diagnosis of patients. Exosomes are nanoscale vesicles released by nearly all cell types that play a central role as mediators of cell-to-cell communication. Moreover, exosomes are emerging as a crucial factor in antigen presentation, immune response, immunomodulation, inflammation, and cellular phenotypic transformation and have also shown promising therapeutic potential in pulmonary fibrosis. This review summarizes current knowledge of exosomes that may promote pulmonary fibrosis and be utilized for diagnostics and prognostics. In addition, the utilization of exosomes and their cargo miRNAs as novel therapeutics and their potential mechanisms are also discussed. This review aims to elucidate the role of exosomes in the pathogenesis of pulmonary fibrosis and paves the way for developing novel therapeutics for pulmonary fibrosis. Further in-depth research and clinical trials on this topic are encouraged in the future.

Introduction

Exosomes are small extracellular vesicles generated by inward budding of the membrane into the lumen of the compartment (Koh et al., 2020). The diameter of exosomes ranges from 40 to 160 nm (Li et al., 2022), and these structures play an important role in intercellular communication by transferring nucleotides or proteins, which then act accordingly (Merckx et al., 2020). Various exosomes can be detected in various body fluids, including blood, urine (Makler and Asghar, 2020), synovial fluid, breast milk, ascites, thorax-related sputum, bronchoalveolar lavage fluid (BALF), and pleural effusions, which represent a unique tool to study the pathophysiology and biomarker discovery of respiratory diseases (Kadota et al., 2016; Lucchetti et al., 2021). Recently, exosomes have been recognized as a novel disease biomarker because they reflect the physiological state and microenvironment of the cell of origin, are readily found in body fluids, and are stable in the extracellular environment (Kok and Yu, 2020).

In respiratory medicine, there is increasing evidence regarding the involvement of exosomes in the pathogenesis of lung diseases, such as chronic obstructive pulmonary disease (COPD), asthma, alpha-1 antitrypsin deficiency (AATD), pulmonary fibrosis (PF), and lung cancer (Trappe et al., 2021). For example, exosomes are reported to be involved in inflammation and immune activation in asthmatic patients (Admyre et al., 2003). Furthermore, exosomes can also transfer microRNAs (miRNAs) that are capable of inducing disease phenotypes in COPD target cells (Fujita et al., 2015). Current research has predominantly focused on the role of exosomes in lung cancer. There are numerous published reports on the pathophysiological role of exosomes in cancer initiation, progression, invasion, metastasis, and new therapeutic approaches using exosomes as drug delivery systems (Xunian and Kalluri, 2020). In addition, the number and profiles of exosomes are altered according to the pathophysiological status of the disease; therefore, exosomes can be used as biomarkers to monitor disease (Zheng et al., 2018). On clinicaltrials.gov, studies using exosomes as diagnostic tests or a molecular cargo that delivers miRNAs and proteins are underway in several lung diseases, such as clinical studies of circulating tumor DNA and combined detection of exosomes to identify benign and malignant pulmonary nodules (NCT04182893) and vaccination assays with dendritic cell-derived exosomes loaded with tumor antigens in non-small-cell lung cancer (NSCLC) (NCT01159288). Murine in vitro and in vivo models have suggested the potential involvement of exosomes in PF (Kadota et al., 2021; Zhou et al., 2021), but a direct correlation has not been clarified.

This review discusses the role of exosomes in PF to elucidate their potential application as diagnostic and prognostic biomarkers and therapeutic targets.

Exosomes

Exosomes are nanosized membrane-bound vesicles released from cells and transport lipids, proteins, and nucleic acids (including mRNA, miRNA, lncRNA, circular RNA, ribosomal RNA, tRNA, and DNA fragments) (Li et al., 2022). Exosomes were first discovered in circulation during sheep reticulocyte maturation (Pan et al., 1985), and subsequently in other biological fluids (Makler and Asghar, 2020) and cell culture supernatants. Exosomes and microvesicles are collectively referred to as extracellular vesicles. Exosomes derived from different cell sources share similar surface proteins, including tetraspanins CD9, CD63, CD81, and CD82, as well as Alix and TSG101 (Zhu et al., 2021), which are recognized and currently used as markers for exosomes. The formation and secretion of exosomes is regulated by Rab proteins (Ostrowski et al., 2010), the endosomal sorting complex required for transport proteins (Tamai et al., 2010), and intracellular Ca2+ levels (Kim et al., 2021). Exosomes also express cell surface proteins that are similar to their origin. For example, mesenchymal stem cell (MSC)-derived exosomes express CD29, CD44, CD73, CD90, and integrins so that they can adhere and fuse with circulating or distant resident cells (Szul et al., 2016).

Exosomes can bind to the surface of target cells (receptor cells) and enter directly or activate receptors on the target cell surface to perform biological functions such as mediating antigen presentation and immune regulation. Macrophage-derived exosomes contain major histocompatibility complex (MHC) class II and costimulatory molecules that play a role in antigen presentation and naive T cell priming (Ramachandra et al., 2010). Exosomes released from activated macrophages can enhance immune cell activity by delivering inflammatory cytokines such as tumor necrosis factor (TNF) (O'Neill and Quah, 2008), while exosomes released by T cells can target various different cells and induce immunomodulatory effects (Lindenbergh and Stoorvogel, 2018). In summary, exosomes are crucial for intercellular communication, immune responses, immunomodulation, inflammation, and the transformation of cellular phenotypes.

Exosomes contribute to the pathogenesis of pulmonary fibrosis

PF is a chronic, progressive, and destructive lung disease characterized by the accumulation of fibroblasts/myofibroblasts, increased deposition of extracellular matrix, and decreased lung function (Richeldi et al., 2017). The etiology of PF is currently unknown. There is increasing evidence that exosomes contribute to the pathogenesis of pulmonary fibrosis. Makiguchi et al. (2016) found that miR-21-5p was elevated in serum exosomes during acute inflammation and chronic fibrosis in a bleomycin-induced PF mouse model. In addition, patients with PF and high levels of miR-21-5p had a significantly poorer prognosis over 30 months, indicating the potential of miR-21-5p as a prognostic biomarker for PF. Chen et al. (2022) demonstrated that exosomes derived from hypoxia-induced alveolar epithelial cells stimulated interstitial PF through a mechanism dependent on the lncRNA HOTAIRM1. Increased numbers of BALF exosomes were reported in mice with experimental PF as well as in patients with idiopathic PF (IPF). This was because exosomes carry fibrotic mediators, such as WNT5A, which lead to increased fibroblast proliferation (Martin-Medina et al., 2018). Lacedonia et al. (2021) reported that exosomal miRNAs let-7d and miR-16 were significantly downregulated in the serum of patients with IPF. Expression of let-7d was also repressed in exosomes derived from BALF of PF mice (Xie et al., 2020). Furthermore, numerous differentially expressed miRNAs were detected in the lung-tissue-derived exosomes of patients with IPF compared with non-smoking controls, and these data further revealed lung-specific miRNAs associated with chronic lung diseases that could serve as potential biomarkers or therapeutic targets (Kaur et al., 2021). Liu et al. (2018) found that miR-125b-5p, miR-128-3p, miR-21-5p, miR-100-5p, miR-140-3p, and miR-374b-5p were upregulated, while let-7d-5p, miR-103-3p, miR-27b-3p, and miR-30a-5p were downregulated in exosomes in BALF from patients with PF. In addition, in a miRNA branch of exosomes, miR-142-3p was significantly upregulated in both sputum and plasma from patients with PF (Guiot et al., 2019; Njock et al., 2019). In addition,miR-142-3p was also positively correlated with the percentage of sputum macrophages and negatively correlated with the percentage of sputum neutrophils in patients with PF (Guiot et al., 2020). Furthermore, miR-142-3p was inversely correlated with lung diffusing capacity for carbon monoxide/alveolar volume (Njock et al., 2019).

Yao et al. (2019) demonstrated that M2 macrophage-derived exosomes overexpressed miR-328 and played a vital role in pulmonary fibroblast proliferation and the progression of PF by regulating FAM13A. Parimon et al. (2019) indicated that overexpressed Syndecan-1 in patients with PF, mainly in type II alveolar epithelial cells, was instrumental in controlling miRNA packaging in extracellular vesicles, including miR-144-3p, miR-142(a)-3p, miR-142b, miR-503-5p, and miR-34b-5p. Fibronectin expression on the surface of extracellular vesicles derived from fibroblasts of patients with PF could mediate their invasion, which may be related to the pathogenesis of fibrotic diseases (Chanda et al., 2019). Kang et al. (2019) revealed that extracellular vesicles derived from transforming growth factor-β (TGF-β)-stimulated fibroblasts contained PD-L1, which could inhibit T-cell proliferation and mediate fibroblast migration. Furthermore, fibroblast-derived extracellular vesicles contained increased levels of miR-23b-3p and miR-494-3p in PF, which induced epithelial cell phenotypic changes and were positively correlated with disease severity (Kadota et al., 2020). Kuse et al. (2020) revealed that miR-22 expression in exosomes from serum was increased and then decreased in a bleomycin-induced PF model. In addition, administration of the miR-22 mimic could ameliorate fibrosis by regulating fibroblast-to-myofibroblast differentiation. The identification of altered exosomes and elucidation of their role in the pathogenesis of PF can serve as references for the development of diagnostic biomarkers and subsequent therapeutic targets (Yamada, 2020; Hua et al., 2021; Yamada, 2021) (Table 1; Figure 1A).

TABLE 1

AuthorSpeciesExosome sourceOutcomeExpressionReference
MakiguchiHumanSerummiR-21-5pMakiguchi et al. (2016)
ChenMouseHypoxia-induced alveolar epithelial cellsHOTAIRM1Chen et al. (2022)
Martin-MedinaHuman, MouseBALFWNT5AMartin-Medina et al. (2018)
LacedoniaHumanSerumlet-7dLacedonia et al. (2021)
miR-16
XieMouseBALFlet-7dXie et al. (2020)
LiuHumanBALFmiR-30a-5pLiu et al. (2018)
let-7d-5p
miR-103-3p
miR-27b-3p
miR-125b-5p
miR-128-3p
miR-21-5p
miR-100-5p
miR-140-3p
miR-374b-5p
Guiot and NjockHumanSputum, plasmamiR-142-3pGuiot et al. (2019); Njock et al. (2019); Guiot et al. (2020)
PlasmamiR-200c-5pGuiot et al. (2020)
SputummiR-33a-5pGuiot et al. (2019); Njock et al. (2019); Guiot et al. (2020)
Sputumlet-7d-5pGuiot et al. (2019); Njock et al. (2019); Guiot et al. (2020)
SputummiR-192-5pNjock et al. (2019)
SputummiR-26a-5pNjock et al. (2019)
SputummiR-29b-3pNjock et al. (2019)
SputummiR-423-3pNjock et al. (2019)
YaoRatM2 macrophagemiR-328Yao et al. (2019)
FAM13A
ParimonHuman MouseBALFSyndecan-1Parimon et al. (2019)
miR-144-3p
miR-142(a)-3p
miR-142b
miR-503-3p
miR-34b-5p
ChandaHumanFibroblastFibronectinChanda et al. (2019)
KangHumanFibroblastPD-L1Kang et al. (2019)
KadotaHumanFibroblastmiR-23b-3pKadota et al. (2020)
miR-494-3p
miR-19a-3p
miR-127-3p
miR-145-5p
miR-424-5p
KuseMouseSerummiR-22-3pKuse et al. (2020)
miR-16-5p
miR-15a-5p
miR-15b-5p
miR-21a-5p
miR-25-3p
miR-93-5p
miR-23a-3p
miR-17-5p
miR-29a-3p
miR-32-3p
miR-15a-3p
miR-29c-5p
miR-29b-1-5p
miR-28a-3p
miR-23b-5p
miR-26a-1-3p
miR-34a-3p
miR-34c-5
miR-21a-3p

Exosomes associated with pulmonary fibrosis.

FIGURE 1

Exosomes as a therapeutic tool for pulmonary fibrosis

Recently, treatment aims for PF have been limited to prolonging life expectancy by slowing progression of the disease (Glass et al., 2022). Exosomes could improve management of PF and serve as an innovative therapeutic (Purghè et al., 2021). As early as 2014, Novelli and Neri’s team demonstrated that the BALF of patients with PF, which contained procoagulant microparticles and tissue factor, could activate coagulation factor X to Xa and potentially contribute to the pathogenesis of PF by regulating fibroblast growth and differentiation (Novelli et al., 2014). This team later reported that pirfenidone, one of only two U.S. Food and Drug Administration (FDA)-approved drugs for IPF at the time of writing, could inhibit p38-mediated generation of tissue factor in microparticles from H2O2 to stimulate alveolar epithelial cells (Neri et al., 2016). These findings showed that exosomes could be used to develop therapeutic applications.

Stem cells exhibit strong self-renewal and proliferation potential. Mesenchymal stem cells/mesenchymal stromal cells (MSCs) are multipotent stromal cells derived from the mesoderm and exhibit immunomodulatory, anti-inflammatory, and most importantly, antifibrotic properties. These properties are due, in part, to the activity of growth factors and cytokines secreted by the MSCs. Recently, researchers revealed that exosomes were responsible for the antifibrotic efficacy of MSCs (Fujita et al., 2018; Ma et al., 2022). MSCs derived from bone marrow (BM), adipose tissue (AD), and placenta confirmed that exosomes from MSCs could reduce inflammation by regulating related signaling pathways and polarization, and could also reduce collagen deposition in bleomycin- (Mansouri et al., 2019; Dinh et al., 2020; Wan et al., 2020), silica- (Choi et al., 2014; Phinney et al., 2015; Bandeira et al., 2018; Dinh et al., 2020), PM2.5- (Gao et al., 2020), and radiation- (Lei et al., 2020) induced PF models and TGF-β stimulated myofibroblasts (Shentu et al., 2017). The effect was also reported in stem cells from menstrual blood (Sun L. et al., 2019). However, Dinh et al. (2020) indicated that lung spheroid cell-derived exosomes exhibited superior therapeutic benefits in damage control and tissue repair compared with those from MSCs; moreover, the regenerative effects were more robust in the bleomycin model compared with the silica model. Guiot et al. (2020) showed that macrophage-derived exosomes alleviated fibrosis in airway epithelial cells and lung fibroblasts by delivering miR-142-3p, while Kadota et al. (2021) reported that human bronchial epithelial cell-derived extracellular vesicles (HBEC EVs) inhibited TGF-β-mediated induction of both myofibroblast differentiation and lung epithelial cellular senescence by attenuating WNT signaling. In the latter study, it was further suggested that administration of HBEC EVs was a promising antifibrotic modality of treatment for PF via miRNA-mediated inhibition of TGF-β-WNT crosstalk (Kadota et al., 2021). In addition, exosomes and their cargos, such as miRNAs, lncRNAs, and proteins, could promote or inhibit epithelial-mesenchymal transition (EMT), modulate the transformation of fibroblasts into myofibroblasts, contribute to the proliferation of fibroblasts, and promote immunoregulatory and mitochondrial damage during PF (Xie and Zeng, 2020). Thus, exosomes are emerging as a promising tool for the clinical benefit of cell therapy to treat PF and can potentially reduce the risks associated with cell transplantation (Table 2; Figure 1B).

TABLE 2

AuthorCell sourceModelTargetReference
DinhLung spheroid cell, hBM-MSCBleomycin, silicaRegulate miR-99a-5p, miR-100-5p, miR-30a-3p, let-7 familyDinh et al. (2020)
MansourihBM-MSCBleomycinModulation of monocyte phenotypesMansouri et al. (2019)
WanhBM-MSCBleomycinRegulate miR-29b-3p and frizzled 6; inhibit fibroblast proliferation, migration, invasion, and differentiationWan et al. (2020)
ChoihBM-MSCSilicaReduce collagen deposition and inflammationChoi et al. (2014)
PhinneyhBM-MSC, mBM-MSCSilicaRegulate miR-451a, miR-1202, miR-630, miR-638; inhibit toll-like receptor signaling in macrophagesPhinney et al. (2015)
ShentuhBM-MSCTGF-β-stimulated myofibroblastRegulate miR-199a/b-3p, miR-21-5p, miR-630, miR-22-3p, miR-196a-5p, miR-199b-5p, miR-34a-5p, and miR-148a-3pShentu et al. (2017)
BandeirahAD-MSCSilicaReduce collagen fiber content, size of granuloma, number of macrophages, and IL-1β, TGF-βBandeira et al. (2018)
GaohAD-MSCPM2.5Regulate let-7-5p, TGF-βR1; reduce apoptosis and necrosis, ROS, inflammationGao et al. (2020)
LeiPlacenta MSCsRadiationRegulate miR-214-3p, ATM/P53/P21; inhibit vascular damage, inflammation, and fibrosisLei et al. (2020)
SunMenstrual blood stem cellsBleomycinRegulate let-7-5p; regulates ROS, mtDNA damage, NLRP3 inflammasome activationSun L. et al. (2019)
GuiotMacrophageTGF-β stimulated cellsRegulate miR-142-3p, TGF-βR1Guiot et al. (2020)
KadodaHuman bronchial epithelial cellBleomycinInhibit TGF-β-mediated induction of both myofibroblast differentiation and lung epithelial cellular senescence by attenuating WNT signalingKadota et al. (2021)
XieBone marrow mesenchymal stem cells (BMSCs)Under pathological and physiological conditionsMay promote or inhibit EMT of type II alveolar epithelial cells and the transformation of fibroblasts into myofibroblastsXie and Zeng, (2020)

Application of exosomes in experimental models of pulmonary fibrosis.

Potential miRNA targets for pulmonary fibrosis

miR-21-5p: anti-apoptosis

Exosomal miRNAs were found to have potential applications in PF (Inomata et al., 2021; Peng et al., 2022; Yang et al., 2022). Since miR-21-5p is regarded as an oncogene in lung cancer, since the expression of miR-21-5p was significantly upregulated in patients with lung cancer, and it can be used as a biomarker for lung cancer (Zhou et al., 2022). Yan et al. (2018) reported that miR-21-5p inhibited TGF-βI to induce cell proliferation in NSCLC, while Tang et al. (2021) revealed that this miRNA boosted NSCLC progression by regulating SMAD7. Inhibition of miR-21-5p increased radiosensitivity in NSCLC (Song et al., 2017). The anti-apoptosis mechanism of miR-21-5p was subsequently investigated and was also found to play a role in many other lung diseases. Wu et al. (2022) indicated that ADMSC-EVs carrying miR-21-5p alleviated hyperoxia-induced lung injury (HILI) via the SKP2/Nr2f2/C/EBPα axis, and miR-21-5p could inhibit MAP2K3 expression and reduce cellular apoptosis in HILI (Qi et al., 2021). Liu et al. (2020) proved that miR-21-5p regulated hyperoxia-induced mitophagy and mitochondrial dysfunction by directly binding to the target gene PGAM5 (Liu et al., 2020). Moreover, miR-21-5p inhibited apoptosis of AEC II cells via PTEN/AKT in a hyperoxic acute lung injury rat model (Qin et al., 2019). Wang et al. (2018) demonstrated that resveratrol alleviated PF by regulating miR-21 through both the TGF-β1/SMAD and MAPK/AP-1 signaling pathways. Moreover, extracellular vesicles from MSCs pre-exposed to hypoxia exhibited increased miR-21-5p, which can promote lung cancer development by reducing apoptosis and promoting macrophage M2 polarization (Ren et al., 2019). In addition, exosomes from MSCs alleviated lung ischemia/reperfusion injury by delivering miR-21-5p targeting PTEN and PDCD4 (Ren et al., 2019). Administration of MSCs-derived exosomes or miR-21-5p agomir reduced pulmonary edema and dysfunction, M1 polarization of alveolar macrophages, and secretion of high mobility group box 1(HMGB1), IL-8, IL-1β, IL-6, IL-17, and TNF-α (Li et al., 2019). In conclusion, the above changes indicate a potential mechanism by which miR-21-5p regulates apoptotic/anti-apoptotic alterations in lung disease (Table 3).

TABLE 3

AuthorDiseaseTarget/pathwayRoleExpressionReference
ZhouNSCLCBiomarkerZhou et al. (2022)
YanNSCLCTGF-βIInduce cell proliferationYan et al. (2018)
TangNSCLCSMAD7Boost NSCLC progressionTang et al. (2021)
SongNSCLCDecrease radiosensitivitySong et al. (2017)
WuHILISKP2/Nr2f2/C/EBPα axisAlleviate HILIWu et al. (2022)
QiHILIMAP2K3Reduce cellular apoptosisQi et al. (2021)
LiuHILIPGAM5Regulate hyperoxia-induced mitophagy and mitochondrial dysfunctionLiu et al. (2020)
QinHyperoxic acute lung injuryPTEN/AKTInhibit apoptosis of AEC II cellsQin et al. (2019)
WangPFTGF-β1/SMAD and MAPK/AP-1 signaling pathwaysAlleviate PFWang et al. (2018)
RenLung cancerPTEN, PDCD4, and RECKPromote lung cancer developmentRen et al. (2019)
LiLung ischemia/reperfusion injuryPTEN and PDCD4Alleviate lung ischemia/reperfusion injuryLi et al. (2019)

The roles of miR-21-5p in lung disease.

Let-7d-5p: senescence

Previous studies revealed that let-7d-5p plays a key role in regulating the cell cycle and senescence, differentiation, and carcinogenesis (Markopoulos et al., 2017; Chen Y. N. et al., 2019). In addition, let-7d-5p affected the stemness and differentiation of MSCs, while transfection of fibroblasts with let-7d-5p reduced the expression of mesenchymal markers (Huleihel et al., 2014). In recent years, the role of let-7d-5p in degenerative diseases such as Alzheimer’s disease and amyotrophic lateral sclerosis has been investigated, and it was significantly downregulated in both diseases (Kumar et al., 2013; Mendes-Silva et al., 2016; Chen et al., 2018; Liguori et al., 2018). Moreover, let-7d-5p showed anti-inflammatory properties and inhibited intestinal epithelial cell apoptosis in necrotizing enterocolitis of neonatal rats by negatively regulating the LGALS3-dependent TLR4/NF-κB signaling pathway (Sun et al., 2020). The expression of let-7d-5p was downregulated both in the skin of systemic sclerosis and in the lungs of PF (Bagnato et al., 2017). Furthermore, when patients had both acute exacerbation and stable PF, let-7d-5p expression was downregulated compared with controls (Min et al., 2016). Significant downregulation of let-7d-5p was also observed in the serum of patients with NSCLC, and its expression could predict overall survival (Gasparini et al., 2015; Kumar et al., 2020). The fungus Trametes robiniophila, which is used as a traditional Chinese medicine, represses angiogenesis and tumor growth of lung cancer via strengthening let-7d-5p and targeting NAP1L1 (Gan et al., 2022). In contrast, overexpression of let-7d-5p was detected in cystic fibrosis (Ideozu et al., 2019), lung cysts/pneumothorax presentation of Birt-Hogg-Dubé Syndrome (Min et al., 2020), and chronic mucus hypersecretion in COPD (Tasena et al., 2018). Furthermore, ADSCs-EVs inhibited TGF-βRI by transferring let-7d-5p and further mitigated PF (Gao et al., 2020). Given that let-7d-5p is highly enriched in stem cells such as MSCs, therapies with cells or cell-free exosomes provide novel strategies for various diseases (Table 4).

TABLE 4

AuthorDiseaseTarget/pathwayRoleExpressionReference
Chen; Kumar; Mendes-SilvaAlzheimer’s diseaseAlzheimer’s diseaseKumar et al. (2013); Mendes-Silva et al. (2016); Chen et al. (2018)
LiguoriAmyotrophic lateral sclerosisLiguori et al. (2018)
SunNecrotizing enterocolitis of neonatal ratsLGALS3-dependent TLR4/NF-κB signaling pathwayAnti-inflammatory properties and inhibited intestinal epithelial cell apoptosisSun et al. (2020)
Bagnato; MinPFMin et al. (2016); Bagnato et al. (2017)
Gasparini; KumarNSCLCBiomarkerGasparini et al. (2015); Kumar et al. (2020)
GanLung cancerNAP1L1Repress angiogenesisGan et al. (2022)
Ideozucystic fibrosisIdeozu et al. (2019)
Minlung cysts/pneumothorax presentation of Birt-Hogg-Dubé SyndromeMin et al. (2020)
TasenaCOPDTasena et al. (2018)
GaoPFTGF-ßRIMitigate PFGao et al. (2020)

The roles of let-7d-5p in lung disease.

miR-100-5p: regulator of mammalian target of rapamycin

Accumulating studies have reported that miR-100 is a master regulator of PI3K/AKT/mTOR signaling in different diseases. The PI3K/AKT/mTOR signaling pathway is a critical regulator of cell growth and proliferation as well as stress responses. Wang et al. (2015) found that miR-100 regulated the proliferation of pulmonary artery smooth muscle cells in hypoxic pulmonary hypertension rats by inhibiting the expression of mTOR. Subsequently, miR-100-5p was confirmed to directly target the 3′-untranslated region (3′-UTR) of mTOR (Wu et al., 2019). Ye et al. (2015) reported that miR-100-5p promoted cell apoptosis and affected cell survival in amyloid ß-induced neuronal pathologies via the mTOR pathway, and Frith et al. (2018) demonstrated that miR-100-5p could modulate the fate of MSCs by altering mTOR signaling. A significant upregulation of mTOR was found in fibroproliferative diseases, suggesting mTOR inhibitors could be promising modulators of such diseases, including PF and liver fibrosis (Lawrence and Nho, 2018; Wang et al., 2019). Moreover, upregulation of miR-100-5p was also observed in PF and liver fibrosis (Peng et al., 2016; Liu et al., 2018), and it was assumed that miR-100-5p was a responsive factor rather than a pathogenic factor. Therefore, it is feasible that miR-100-5p could be utilized to repress mTOR expression and may be a potential therapy target for diseases. For example, miR-100-5p-abundant exosomes derived from MSCs provided a protective effect on articular cartilage and inhibited cell apoptosis in osteoarthritis (Wu et al., 2019). In a study by Dinh et al. (2020), miR-99a-5p and miR-100 were highly expressed in exosomes from lung spheroid cells and MSCs, and upregulated expression of miR-100 was identified in the exosomes of chronic PM2.5 exposure (Wang Y. C. et al., 2021). ReNcell-derived EVs inhibited hypoxia-induced proliferation, migration, and phenotype switching of pulmonary artery smooth muscle cells, at least in part, via the delivery of endogenous highly expressed miRNAs, let-7b-5p, miR-92b-3p, and miR-100-5p (Wang et al., 2020). These studies highlight that miR-100-5p can act as a potential target for fibroproliferative disease treatment (Table 5).

TABLE 5

AuthorDiseaseTarget/pathwayRoleExpressionReference
WangHypoxic pulmonary hypertensionmTORRegulate the proliferation of pulmonary artery smooth muscle cellsWang et al. (2015)
YeAmyloid ß-induced neuronal pathologiesmTOR pathwayPromote cell apoptosis and affect cell survivalYe et al. (2015)
FrithmTOR pathwayModulate MSC fateFrith et al. (2018)
Liu; PengPF and liver fibrosisPeng et al. (2016); Liu et al. (2018)
WuOsteoarthritismTORProvide a protective effect on articular cartilage and inhibit cell apoptosisWu et al. (2019)
DinhExosomes from lung spheroid cellsDinh et al. (2020)
WangMSCs and chronic PM2.5 exposureWang Y. et al. (2021)
WangInhibit hypoxia-induced proliferation, migration, and phenotype switching of pulmonary artery smooth muscle cellsWang et al. (2020)

The roles of miR-100-5p in lung disease.

miR-142-3p: antifibrosis

It was reported that miR-142-3p is highly expressed in the lung interstitium during early lung development (Carraro et al., 2014). This miRNA positively regulates WNT/CTNNB1 (β-catenin) signaling by targeting adenomatous polyposis (APC), which is a negative regulator of WNT signaling (Isobe et al., 2014; Bartel et al., 2018). Impaired proliferation of parabronchial smooth muscle cell progenitors and premature differentiation occurred when miR-142-3p lost its function (Carraro et al., 2014). Aberrant expression of miR-142-3p in PF has been reported. However, the changes in miR-142-3p in patients with PF versus healthy controls are under debate (Guo et al., 2017; Njock et al., 2019; Parimon et al., 2019). WNT/β-catenin signaling has also been reported to be activated in PF. In experimental models, inhibition of WNT/β-catenin signaling reduces lung inflammation and fibrosis (Shi et al., 2017). All the research teams that conducted the above-mentioned studies believed that miR-142-3p was an antifibrotic miRNA. Moreover, Wang et al. (2016) found that overexpression of miR-142-3p suppressed the expression of profibrotic genes in cardiomyocytes by targeting HMGB1. In addition, Yang X. et al. (2017) revealed that plasma miR-142-3p levels were significantly decreased in patients with liver cirrhosis, and that miR-142-3p inhibited the TGF-β/SMAD signaling pathway to prevent hepatic stellate cell activation and reduce profibrotic markers. Zhu et al. (2018) demonstrated that overexpression of miR-142-3p attenuated high glucose-induced EMT in aortic endothelial cells by blocking the TGF-β1/SMAD signaling pathway in myocardial fibrosis, which confirmed the antifibrotic role of miR-142-3p. Consequently, Guiot et al. (2020) utilized miR-142-3p-enriched exosomes derived from macrophages to repress TGF-βR1, leading to antifibrotic properties in PF. However, contrary to these findings, some profibrotic conclusions of miR-142-3p have recently emerged, as reported by Cai et al. (2020). Thus, miR-142-3p warrants further investigation for future therapeutic use (Table 6).

TABLE 6

AuthorDiseaseTarget/pathwayRoleExpressionReference
CarraroEarly lung developmentCarraro et al. (2014)
Isobe; BartelBreast cancer; asthmaWNT/CTNNB1 (β-catenin)Regulate the tumorigenicityIsobe et al. (2014); Bartel et al. (2018)
GuoPFCox-2Inhibit apoptosis and inflammationGuo et al. (2017)
NjockIPFNjock et al. (2019)
ParimonPFParimon et al. (2019)
WangPFHigh mobility group box 1Suppress the expression of profibrotic genesWang et al. (2016)
YangLiver cirrhosisTGF-β/SMAD signaling pathwayPrevent hepatic stellate cell activation and reduce profibrotic markersYang X. et al. (2017)
ZhuMyocardial fibrosisTGF-β1/SMAD signaling pathwayAttenuate high glucose-induced EMT in aortic endothelial cellsZhu et al. (2018)
GuiotPFTGF-βR1Antifibrotic propertiesGuiot et al. (2020)
CaiMyocardial fibrosisProfibrotic propertiesCai et al. (2020)

The roles of miR-142-3p in lung disease.

miR-29b-3p regulates collagen synthesis

The miR-29 family is considered a key regulator of tissue fibrosis, including heart, liver, lung, and kidney, as many reports have shown that members of this family inhibit collagen synthesis by directly binding to its 3ʹUTR in fibroblasts (He et al., 2013; Deng et al., 2017). Recently, accumulative reports demonstrated that miR-29b-3p regulated the TGF-β1/SMAD pathway in cardiac fibrosis (Liang et al., 2019; Xue et al., 2020). Moreover, the expression of miR-29b-3p was decreased in liver fibrosis, and miR-29b-3p overexpression repressed collagenous fibrosis and STAT3 (Tao et al., 2018; Gong et al., 2020). Lu et al. (2017) also reported that the lncRNA H19 promoted tendon differentiation by directly targeting miR-29b-3p, thus activating TGF-β1 and COL1A1 expression. In PF, downregulation of miR-29b-3p was detected (Mullenbrock et al., 2018), and downregulation of miR-29b promoted PF via the TGF-β1/SMAD pathway (Cushing et al., 2011; Pandit et al., 2011; Cushing et al., 2015). Conversely, overexpression of miR-29 prevented bleomycin-induced fibrosis as assessed by hydroxyproline content and collagen I mRNA expression (Cushing et al., 2015), suggesting that miR-29b might have a significant antifibrotic effect. In particular, miR-29b-3p-enriched BM-MSC exosomes suppressed fibroblast proliferation and decreased the level of hydroxyproline in the lung of a bleomycin-induced PF model (Wan et al., 2020). In summary, drugs targeting miR-29b-3p could be considered as potential therapeutics for fibroproliferative diseases (Table 7).

TABLE 7

AuthorDiseaseTarget/pathwayRoleExpressionReference
Deng; HeTissue fibrosis (including heart, liver, lung and kidney)Binding to the 3ʹUTRInhibit collagen synthesistHe et al. (2013); Deng et al. (2017)
Liang; XueCardiac fibrosisTGF-β1/SMAD pathwayLiang et al. (2019); Xue et al. (2020)
Gong; TaoLiver fibrosisSTAT3Repress collagenous fibrosisTao et al. (2018); Gong et al. (2020)
LuLiver fibrosisTGF-β1Activate COL1A1 expressionLu et al. (2017)
Mullenbrock; Cushing; PanditPFTGF-β1/SMAD pathwayDownregulate miR-29b and promote PFCushing et al. (2011); Pandit et al. (2011); Cushing et al. (2015); Mullenbrock et al. (2018)
WanPFSuppress fibroblast proliferation and decrease the level of hydroxyprolineWan et al. (2020)

The roles of miR-29b-3p in lung disease.

miR-22-3p: tissue-specific regulator of fibrogenesis

MiR-22 has been proven to directly regulate bone morphogenic protein (BMP) by binding to its 3ʹUTR (Long et al., 2013). However, the effect of miR-22 on BMP seems to be tissue specific. For instance, an association between miR-22 and renal tubulointerstitial fibrosis was reported (Zhang et al., 2018), and similarly, miR-22 could promote the development of liver cirrhosis through BMP7 suppression in some studies (Ji et al., 2015; Zhou et al., 2018). The lncRNA Neat1 expedited the progression of liver fibrosis in mice through targeting miR-148a-3p and miR-22-3p to upregulate Cyth3 (Huang et al., 2021), and miR-30b-5p and miR-22-3p restrained fibrogenesis post-MI in mice via targeting PTAFR (Zhao et al., 2020). However, in contrast to these findings, downregulation of miR-22 increased the expression of collagen and fibrogenesis in vitro, whereas overexpression of miR-22 alleviated angiotensin II-induced cardiac fibrosis, indicating an antifibrotic effect of miR-22 (Hong et al., 2016). miR-22 expression was increased after bleomycin-induced PF in mice, while administration of an miR-22 mimic ameliorated lung lesions and decreased α-SMA expression (Kuse et al., 2020). Furthermore, miR-22 in MSC-derived extracellular vesicles was beneficial for PF (Shentu et al., 2017), demonstrating its antifibrotic effect in the lung. Due to the contrasting effects of miR-22 on fibrogenesis in different organs, local application of treatments is suggested to lessen the side effects of systemic administration (Table 8).

TABLE 8

AuthorDiseaseTarget/pathwayRoleExpressionReference
LongKidney fibrosisBone morphogenic protein (BMP)Alleviate kidney fibrosisLong et al. (2013)
ZhangRenal tubulointerstitial fibrosisZhang et al. (2018)
Ji; ZhouLiver fibrosisBMP7Promote the development of tissue cirrhosisJi et al. (2015); Zhou et al. (2018)
HuangLiver fibrosisCyth3Promote the development of tissue cirrhosisHuang et al. (2021)
ZhaoLiver fibrosisPTAFRPromote the development of tissue cirrhosisZhao et al. (2020)
HongCardiac fibrosisAlleviate dangiotensin II-induced cardiac fibrosisHong et al. (2016)
Kuse; ShentuPFα-SMAAntifibrotic effect in the lungShentu et al. (2017); Kuse et al. (2020)

The roles of miR-22-3p in lung disease.

miR-15a: Hippo-YAP mediator

Growing evidence implicates miR-15a in the cell cycle and fibrotic diseases. Tijsen et al. (2014) found that inhibiting miR-15a exacerbated cardiac hypertrophy and fibrosis in mice by manipulating TGF-β. Inhibition of miR-15a/b also promoted fibrotic remodeling in type 2 diabetic hearts, whereas overexpression of miR-15a/b suppressed the activation of diabetic cardiac fibroblasts (Rawal et al., 2017). Furthermore, miR-15a/-15b, miR-18a-5p, miR-20a-5p, miR-26b-5p, miR-29, miR-133a, miR-141, miR-146, miR-200b, miR-203, miR-222, and miR-551b-5p were all downregulated in the diabetic heart and exhibited antifibrosis activity when they were overexpressed (Jin 2021). Fu et al. (2022) reported that miR-15a could inhibit LX-2 cell viability and hepatic fibrosis pathogenesis by targeting SOX9. However, the role and mechanism of miR-15a in PF remain controversial. MiR-15a was one of 161 miRNAs that were previously reported to be differentially expressed in the lungs of bleomycin-treated and control mice (Xie et al., 2011). Recently, miR-15a was discovered to be one of the most important miRNAs regulating the Hippo pathway, and knockdown of miR-15a promoted Twist expression by targeting YAP1, resulting in fibroblast activation and lung fibrosis (Chen Y. et al., 2019). In contrast, the lncRNA PFAR was proven to participate in PF by binding to and sponging miR-15a and by regulating the expression of YAP1 (Sun J. et al., 2019). Restoration of miR-15a can inhibit fibrogenesis (Chen Y. et al., 2019; Sun J. et al., 2019). However, according to Kuse et al. (2020), the expression of miR-15a in exosomes was strongly upregulated in bleomycin-induced PF. The reason for this discrepancy has yet to be elucidated; therefore, the use of miR-15a, especially that from exosomes, as a diagnostic and therapeutic target remains to be determined (Table 9).

TABLE 9

AuthorDiseaseTarget/pathwayRoleExpressionReference
TijsenCardiac hypertrophy and fibrosisTGF-βExacerbate cardiac hypertrophy and fibrosisTijsen et al. (2014)
Rawal; JinDiabetic cardiac fibroblastsSuppress the activation of diabetic cardiac fibroblastsRawal et al. (2017); Jin (2021)
FuHepatic fibrosisSOX9Inhibit LX-2 cell viability and hepatic fibrosisFu et al. (2022)
Chen; SunPFYAP1Inhibit the activation of fibroblastsChen Y. et al. (2019); Sun J. et al. (2019)
KusePFKuse et al. (2020)

The roles of miR-15a in lung disease.

miR-23 regulates epithelial–mesenchymal transition

MiR-23 belongs to the miR-23/24/27 cluster and is highly correlated with cell proliferation, differentiation, invasion, migration, and EMT in cancer (Cao et al., 2012; Zheng et al., 2014). Previous research demonstrated that miR-23 was significantly increased in high glucose-treated EMT in mesothelial peritoneal cells, and inhibition of miR-23 attenuated the process of EMT (Yang L. et al., 2017). Similarly, knockdown of miR-23b could reverse TGF-β-induced liver fibrosis by regulating COLA1 and ACTA2 expression and stellate cell activation (Rogler et al., 2017). Aberrant expression of miR-23a-3p, miR-23b-3p, and miR-23b-5p was recently detected in PF (Kuse et al., 2020). However, exosomal miR-23a inhibited myofibroblast differentiation through inhibition of the TGF-β/SMAD pathway during wound healing (Fang et al., 2016), and was thus used in the experimental treatment of PF (Tan et al., 2018). Moreover, extracellular vesicles derived from umbilical cord MSCs enriched with miR-23 alleviated PF by inhibition of TGF-β signaling (Shi et al., 2021). The precise effect and mechanism of the miR-23 family requires further investigation (Table 10).

TABLE 10

AuthorDiseaseTarget/pathwayRoleExpressionReference
Cao; ZhengCancerEMTCorrelate with cell proliferation, differentiation, invasion, migrationCao et al. (2012); Zheng et al. (2014)
Yang; RoglerLiver fibrosisCOLA1 and ACTA2Reverse TGF-β-induced liver fibrosisYang L. et al. (2017); Rogler et al. (2017)
Kuse; Fang; Tan; ShiPFTGF-β/SMAD pathwayAlleviate PFFang et al. (2016); Tan et al. (2018); Kuse et al. (2020); Shi et al. (2021)

The roles of let-7d-5p in lung disease.

Discussion and future perspectives

Interest in the contribution of exosomes to the maintenance of lung homeostasis and the progression of PF, as well as the potential therapeutic utilization of exosomes, has increased substantially in recent years. Exosomes are critical for intercellular communication, immune response, immune regulation, inflammation, and cell phenotype transformation, and play a vital role in PF. This review summarized recent advances regarding the status of exosomes as potential biomarkers and therapeutic tools in PF. The potential involvement of exosomes in the pathological process of PF was first reviewed by describing the relevant characteristics of exosomes in PF, which highlights the potential value of exosomes as PF markers and therapeutic targets. Second, mouse in vivo and in vitro models were reviewed to demonstrate that multiple sources of exosomes have therapeutic effects on PF. These studies have collectively indicated that exosomes can be used as a therapeutic tool for PF and can reduce the risk associated with cell engraftment. Furthermore, exosomes have the potential to develop cell-free therapies. The main contents of exosomes are discussed, and the potential miRNA targets of PF are enumerated to highlight future research directions for elucidating the mechanism of exosomes in the treatment of PF. Exploration of the functional properties of exosomes in the context of PF could also reveal new avenues for therapeutic approaches.

Exosomes have potential clinical application value as a therapeutic tool for PF. However, several issues need to be addressed before they can be used in clinics. First, the characteristics and functions of exosomes derived from multiple types of cells should be extensively studied for safety aspects in future clinical applications. Exosomes can target several signaling pathways and molecules and therefore may induce previously unknown effects. Furthermore, treatments aimed at specific targets can cause persistent or lethal outcomes. Thus, thorough investigations of exosomes should be conducted to provide comprehensive information. Second, the exosomes need to be delivered with precision. Identification of target cells and limiting the destination to specific cells, for instance, fibroblasts/myofibroblasts, abnormal alveolar epithelial cells or immune cells in PF, should be performed to accurately interpret and correct the biological function. Finally, a manufacturing practice-grade standard protocol for the isolation and utilization of cell-free exosomes should be proposed. For the use of exosomes as diagnostic, prognostic, and therapeutic targets, the related protocols should be optimized and standardized to minimize variations due to technical issues.

There are some limitations to this review. First, when discussing exosomes as a potential therapeutic tool for PF, the mechanism of action was not explored in depth; only the potential miRNA targets were listed, and the description focused on the role of exosomes through miRNAs. Second, the review does not systematically discuss the major cells in PF that are altered by exosomes—fibroblasts, epithelial cells, and macrophages—so the specific cellular targets of exosomes in PF remain unclear, and further discussion on the mechanism of action is needed. In addition, each miRNA is known to have multiple targets. For example, miR-21-5p could alleviate HILI via the SKP2/Nr2f2/C/EBPα axis (Wu et al., 2022), PTEN/AKT signaling (Qin et al., 2019), inhibition of MAP2K3 (Qi et al., 2021) or by directly binding to the target gene PGAM5 (Liu et al., 2020). Although a single miRNA can often regulate multiple targets within a pathway or network, there are also risks of unpredictable and opposite effects on additional miRNA targets. Sun et al. (2015) demonstrated that miR-214 mediates cardiac fibroblast proliferation and collagen synthesis via inhibition of Mfn2 and activation of ERK1/2 MAPK signaling, but Dong et al. (2016) reported that miR-214 exerts cardio-protective effects by inhibition of fibrosis, and the inhibitory effect involves TGF-β1 suppression and MMP-1/TIMP-1 regulation. It is therefore feasible that the use of miRNA for disease therapy might have adverse implications for other essential biological pathways. Before clinical application in PF, further experiments are needed to explore the targets of miRNAs and their mimics in vivo and to determine their effects on other signaling pathways to avoid potential adverse effects.

Statements

Author contributions

YY and HH performed data collection and analysis. YL contributed to the study’s conception and design.

Funding

The research leading to these results has received funding from the China Postdoctoral Science Foundation (2018M643504), the PostDoctor Research Project, West China Hospital, Sichuan University (2020HXBH089) and Sichuan University Full-time Postdoctoral Research and Development Fund (2020SCU12023).

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors, and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Abbreviations

AATD, alpha-1 antitrypsin deficiency; AD, adipose tissue; ADSCs, adipose mesenchymal stem cells; BALF, bronchoalveolar lavage fluid; BM, bone marrow; BMP, bone morphogenic protein; COPD, chronic obstructive pulmonary disease; ECM, extracellular matrix; EMT, epithelial–mesenchymal transition; EVs, extracellular vesicles; HBE, Chuman bronchial epithelial cell-derived; HILI, hyperoxia-induced lung injury; IPF, idiopathic pulmonary fibrosis; MHC, major histocompatibility complex; MSCs, mesenchymal stem cells/mesenchymal stromal cells; mTOR, mammalian target of rapamycin; NSCLC, non-small-cell lung cancer; PF, pulmonary fibrosis; TGF-β, transforming growth factor-β; TNF, tumor necrosis factor; 3′UTR, 3′untranslated region.

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Summary

Keywords

exosome, pulmonary fibrosis, biomark, therapy tool, microRNA

Citation

Yang Y, Huang H and Li Y (2022) Roles of exosomes and exosome-derived miRNAs in pulmonary fibrosis. Front. Pharmacol. 13:928933. doi: 10.3389/fphar.2022.928933

Received

26 April 2022

Accepted

15 July 2022

Published

11 August 2022

Volume

13 - 2022

Edited by

Yang Zhou, Brown University, United States

Reviewed by

Krzysztof Bryniarski, Jagiellonian University Medical College, Poland

Sandhya Bansal, St. Joseph’s Hospital and Medical Center, United States

Gagandeep Kaur, University of Rochester, United States

Updates

Copyright

*Correspondence: Yi Li,

This article was submitted to Respiratory Pharmacology, a section of the journal Frontiers in Pharmacology

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All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

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