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ORIGINAL RESEARCH article

Front. Astron. Space Sci., 14 November 2022

Sec. Astrochemistry

Volume 9 - 2022 | https://doi.org/10.3389/fspas.2022.1051535

Theoretical spectra and energetics for c-C3HC2H, l-C5H2, and bipyramidal D3h C5H2

  • Department of Chemistry and Biochemistry, The University of Mississippi, Oxford, MS, United States

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Abstract

The recent astronomical detection of c-C3HC2H and l-C5H2 has led to increased interest in C5H2 isomers and their relative stability. The present work provides the first complete list of anharmonic vibrational spectral data with infrared intensities for three such isomers as well as including the first set of rotational data for the bipyramidal C5H2 isomer allowing for these molecules to serve as potential tracers of interstellar carbon. All three isomers have fundamental vibrational frequencies with at least one notably intense fundamental frequency. The l-C5H2 isomer has, by far, the highest intensities out of the three isomers at 2076.3 cm−1 (738 km mol−1) and 1887.5 cm−1 (182 km mol −1). The c-C3HC2H isomer has one intense peak at 3460.6 cm−1 (84 km mol−1), and the bipyramidal C5H2 isomer has one intense peak at 489.3 cm−1 (78 km mol−1). The relative intensities highlight that while l-C5H2 is not the lowest energy isomer, its notable intensities should make it more detectable in the infrared than the lower energy c-C3HC2H form. The bipyramidal isomer is firmly established here to lie 44.98 kcal mol−1 above the cyclic form. The explicitly correlated coupled cluster rovibrational spectral data presented herein should assist with future laboratory studies of these C5H2 isomers and aid in detection in astronomical environments especially through the newly operational James Webb Space Telescope.

1 Introduction

The unidentified infrared bands (UIRs) are unattributed spectral features observed in virtually all types of astronomical objects whose provenance is not firmly established (Peeters et al., 2002). The UIRs were first recognized in 1973 in the 8–13 μm region and have since been detected in nebulae and in the diffuse interstellar medium (ISM) among other astronomical environments (Peeters et al., 2002). The UIRs were first believed to originate from mostly grain mantle molecules (Allamandola et al., 1979). However, since 1984 most of the UIR spectral features have been hypothesized to be caused by polycyclic aromatic hydrocarbons (PAHs) (Leger and Puget, 1984; Sellgren, 1984; Molster et al., 2001). One difficulty with supporting this so-called PAH hypothesis is that most PAHs are not rotationally active at worst or weakly dipolar at best. This leads many PAHs to be poor candidates for rotational astronomical detection, which has been the primary vehicle for most astrochemical molecular observation including the recent detection of PAH-like molecules (Cabezas et al., 2021; Cernicharo et al., 2021). However, some small PAH-like molecules, like isomers of C5H2, have a lower symmetry which can allow for a nonzero dipole moment and possible rotational activity. Recently, two isomers of C5H2, l-C5H2 and ethynyl cyclopropenylidene (c-C3HC2H), have been independently detected in Taurus Molecular Cloud-1 and pathways of formation have been determined experimentally and supported theoretically (He et al., 2020; Cabezas et al., 2021; Cernicharo et al., 2021; Karton and Thimmakondu, 2022). The detection of C5H2 isomers could allude to other rotationally dark PAHs lurking in the interstellar medium. Insight into the presence, and identity, of PAHs in various astronomical environments can shed light on the chemical and physical aspects of these environments and how they contribute to the UIRs (Tielens, 2008). Additionally the recently launched James Webb Space Telescope (JWST) will allow for more detections through vibrational/infrared spectroscopy which can be used for the detection of PAHs that previously could not be detected through rotational spectroscopy.

In addition to the astronomical interest, previous theoretical works have disagreed about the relative energy of C5H2 isomers. These have been quantum chemically computed using coupled cluster theory at the CCSD/DZP, CCSD/TZ2P, and CCSD(T)/cc-pVTZ levels, but there are still discrepancies in the relative energies (Balaji and Michl, 1988; Seburg et al., 1997; Veis et al., 2008). Specifically, the bipyramidyl C5H2 isomer, shown in Figure 1, has an inconsistent magnitude of relative energy when compared to other C5H2 isomers depending on the level of theory utilized (Balaji and Michl, 1988; Seburg et al., 1997; Veis et al., 2008). A previous study at the HF/6-31G* level (Pople et al., 1993) places bipyramidal C5H2 100 kcal mol−1 higher than other C5H2 isomers while another study utilizing MBPT(2)/6-31G* puts the bipyramidal C5H2 isomer only 30 kcal mol−1 higher (Balaji and Michl, 1988; Pople et al., 1993; Seburg et al., 1997). Furthermore, previous density functional and coupled cluster theory computations also place the bipyramidyl C5H2 isomer 47–70 kcal mol−1 higher than other isomers (Seburg et al., 1997; Karton and Thimmakondu, 2022). Despite the different levels of theory agreeing that the bipyramidyl C5H2 isomer is not the lowest energy isomer, there is a clear disagreement on the magnitude of energy difference for the isomer (Balaji and Michl, 1988; Pople et al., 1993; Seburg et al., 1997; Karton and Thimmakondu, 2022). Determining more accurate relative energies is necessary because the ambient energy in the ISM allows for the formation of non-global-minimum structures. However, the energy can not be too much higher; a higher energy difference closer to 100 kcal mol −1 is much more unreasonable for formation in the ISM (Seburg et al., 1997). Newer, higher-level computations could help to settle the disagreements as to the relative energy of the bipyramidal C5H2 structure compared to the other isomers of C5H2. A further look into the l-C5H2 isomer, shown in Figure 2, and the c-C3HC2H isomer, shown in Figure 3, can provide a common reference to determine the relative energy of the bipyramidal C5H2 isomer. Additionally the c-C3HC2H isomer and the l-C5H2 isomer have been detected in the laboratory by Fourier transform spectrometry which provides a benchmark to the theoretical methods utilized herein (McCarthy et al., 1997; Travers et al., 1997).

FIGURE 1

FIGURE 1

Bipyramidal C5H2.

FIGURE 2

FIGURE 2

l-C5H2.

FIGURE 3

FIGURE 3

c-C3HC2H.

The present work utilizes high level quantum chemical computations to compute molecular structures, energies, and spectroscopic data for the bipyramidal C5H2 isomer shown in Figure 1, the l-C5H2 isomer shown in Figure 2, and the c-C3HC2H isomer shown in Figure 3. The spectroscopic data is computed using quartic force fields (QFFs) which are fourth-order Taylor series expansions of the internuclear potential energy portion of the Watson Hamiltonian (Fortenberry and Lee, 2019). QFFs based on coupled cluster theory at the singles, doubles, and perturbative triples level within the explicitly correlated F12b construction [CCSD(T)-F12b] (Adler et al., 2007; Knizia et al., 2009) and a triple-ζ basis set can frequently achieve agreement to within 5–7 cm−1 of gas-phase experimental vibrational frequencies (Gardner et al., 2021). However a shortcoming of this method is that the rotational constants are only accurate to about 60 MHz (Agbaglo et al., 2019; Agbaglo and Fortenberry, 2019a,b; Watrous et al., 2021). An improvement would be to utilize a composite method combining core-correlated CCSD(T)-F12b with the cc-pCVTZ-F12 basis set and a correction for scalar relativity (Watrous et al., 2021). This method is referred to as F12-TZ-cCR and offers closer agreement, compared to previous methods, to experimental rotational constants on the order of 7.5 MHz which is necessary for accurate detection (Westbrook et al., 2021b; Watrous et al., 2021). Thus the fundamental vibrational frequencies and rotational constants at this level of theory provided here will lend theoretical support to experiments that will help NASA missions such as the Stratospheric Observatory for Infrared Astronomy (SOFIA) and JWST to facilitate the detection of these isomers in space.

2 Computational details

All four levels of theory in the present work utilize CCSD(T)-F12b (Raghavachari et al., 1989; Adler et al., 2007; Knizia et al., 2009; Shavitt and Bartlett, 2009). The first two QFFs use the cc-pVXZ-F12 basis sets (Peterson et al., 2008; Yousaf and Peterson, 2008; Knizia et al., 2009) where X is D or T. This combination is abbreviated as F12-XZ in the following. F12-DZ and F12-TZ QFFs are utilized for all three isomers. The other two levels of theory are based on core-correlated CCSD(T)-F12b with the cc-pCVXZ-F12 basis sets, (Watrous et al., 2021), where X is again D or T. Additionally this method includes a correction for scalar relativity computed with canonical CCSD(T) with a cc-pVTZ-DK basis set (Douglas and Kroll, 1974; Jansen and Hess, 1989). This combination is hereafter referred to as F12-XZ-cCR. F12-DZ-cCR and F12-TZ-cCR QFFs are only utilized for the c-C3HC2H isomer due to the substantial increase in computational cost. The QFF for the c-C3HC2H isomer is composed of 20,641 displacements from the equilibrium geometry along the symmetry-internal coordinates (SICs) shown below with atom labels corresponding to Figure 3.

The QFFs for the l-C5H2 and bipyramidal C5H2 isomers are run directly in Cartesian coordinates composed of 46,064 points and 38,968 points respectively. This increase in the number of points for Cartesians instead of SICs exacerbates the increase in computational cost that would be needed for the F12-DZ-cCR and F12-TZ-cCR methods. For the SIC-based QFFs, the geometry is first optimized at each of the four levels of theory, then each geometry is displaced by 0.005 Å or 0.005 radians along the SICs to form the QFF. For the c-C3HC2H isomer, in addition to the previous displacements, the out-of-plane bends (OPB) are instead displaced by 0.010 Å or 0.010 radians to help combat the well-known OPB problem (Westbrook et al., 2020; Lee and Fortenberry, 2021). At each of the displaced geometries, single-point energies are calculated. The resulting energies are then fit by a least-squares procedure to yield the optimized geometry. A refit to the function minimum zeroes the gradients and yields the new equilibrium geometry as well as the corresponding force constants. The force constants are then converted from SICs to Cartesian coordinates by using the INTDER program (Allen and coworkers, 2005). For the Cartesian QFFs, each geometry is first optimized at the F12-DZ and F12-TZ levels of theory. Then, each geometry is displaced by 0.005 Å along the Cartesian x, y, and z axes. For l-C5H2 at the F12-DZ level of theory, each geometry was displaced by 0.010 Å in the out-of-plane coordinates. The force constants are computed numerically by central finite differences (Westbrook et al., 2021b).

For all of the QFFs, the rovibrational spectral data is computed using the SPECTRO software package (Gaw et al., 1991) which uses the Cartesian force constants in vibrational perturbation theory at second order (Watson, 1977; Papousek and Aliev, 1982; Franke et al., 2021) and second-order rotational perturbation theory (Mills, 1972). Type-1 and -2 Fermi resonances, Fermi polyads (Martin and Taylor, 1997) and Coriolis resonances are taken into account to further increase the accuracy of the rovibrational data (Martin et al., 1995; Martin and Taylor, 1997). These are shown in Supplementary Tables S1–S3 of the Supplemental Information (SI) along with the optimized geometrical parameters and T1 diagnostics shown in Supplementary Tables S4–S6. The anharmonic zero point vibrational energy (ZPVE) from the refit geometry, refit energy (only for the SIC QFF), and energy from the optimized minima are added together to calculate the relative energy.

The geometry optimizations, harmonic frequencies, single point energies, and dipole moments are computed using the Molpro 2020.1 software package (Werner et al., 2020). The dipole moments are computed at the F12-TZ level of theory. Double-harmonic and anharmonic infrared intensities are computed using Gaussian16 (Frisch et al., 2016) with the MP2/aug-cc-pVTZ (Møller and Plesset, 1934; Kendall et al., 1992), B3LYP/aug-cc-pVTZ (Yang et al., 1986; Lee et al., 1988; Becke, 1993), and B3LYP/N07D (Barone et al., 2008) levels of theory. Previous work has shown semi-quantitative accuracy for harmonic infrared intensities for the MP2 level of theory for a substantial decrease in cost relative to higher-level computations (Yu et al., 2015; Finney et al., 2016; Westbrook et al.,2021a).

3 Results and discussion

The relative energies of l-C5H2, c-C3HC2H, and bipyramidal C5H2 are compared at the F12-DZ and the F12-TZ levels of theory as shown in Table 1. The relative energies of the c-C3HC2H and l-C5H2 isomers are similar to previous (Seburg et al., 1997) relative energy computations with the l-C5H2 isomer being 13.79 kcal mol−1 higher in energy than the c-C3HC2H isomer. However, the bipyramidal C5H2 isomer is lower in relative energy than some previous computations (Balaji and Michl, 1988; Pople et al., 1993; Seburg et al., 1997). The relative energy of the bipyramidal C5H2 isomer at the F12-TZ level of theory is 44.98 kcal mol−1 compared to the c-C3HC2H isomer. This relative energy is much closer to the previous MBPT(2)/6-31G* calculations, at about 30 kcal mol−1, as opposed to previous calculations at the HF/6-31G* level of theory where the relative energy was roughly 100 kcal mol−1 higher than other C5H2 isomers (Balaji and Michl, 1988; Pople et al., 1993; Seburg et al., 1997). While this highly-symmetric isomer gives indication of possessing multi-reference effects due to its large T1 diagnostic (0.059), the extent to which this will affect the relative energies is left for future work.

TABLE 1

Isomer F12-DZ F12-TZ CCSD(T)/cc-pVTZa CCSDT(Q)/CBSb
c-C3HC2H 0.00 0.00 2.01 0.66
l-C5H2 13.86 13.79 13.82 13.53
bipyramidyl C5H2 45.90 44.98 47.51

Relative energy of C5H2 Isomers in kcal mol−1 compared to previous experiment.

a

From Ref. (Seburg et al., 1997) where energies are relative to a lower energy isomer.

b

From Ref. (Karton and Thimmakondu, 2022) where energies are relative to a lower energy isomer.

3.1 Rotational constants

Out of the three isomers, the l-C5H2 isomer has the largest dipole moment of 5.94 D and its equilibrium (e) and vibrationally-averaged (0) rotational constants, shown in Table 2, demonstrate near prolate character (κ = − 0.99987 for the F12-TZ level of theory, where κ is defined as (2B0 − A0 − C0)/(A0 − C0)). This large dipole moment has helped with detection of the molecule through rotational spectroscopy. The F12-DZ and F12-TZ rotational constants agree well with a maximum relative difference of 0.57% in the B0 rotational constant. Compared to experimental Fourier transform microwave spectroscopy (McCarthy et al., 1997), the F12-TZ B0 and C0 rotational constants differ from experiment by only 3.0 MHz (0.13%) and 1.1 MHz (0.05%) respectively. This benchmarking constrains the expected accuracy for other, unknown spectral observables provided in this work. The A0 rotational constant differs from experiment by 10,200 MHz (3.67%), but the error for the A0 rotational constant is known to have a higher error for near prolate molecules (Gardner et al., 2021). The complete set of the vibrationally excited rotational constants are reported in Supplementary Table S7 of the SI. The quartic and sextic distortion constants in the S-reduced Hamiltonian are reported in Table 2. The DJ constant is about 13 Hz lower than experiment while the DJK constant differs from experiment by around 24 kHz at the F12-DZ level of theory, but has a much higher difference at the F12-TZ level of theory at around 2,596 kHz. While DJK often exhibits minor effects on the rotational spectrum of near-prolate molecules (Stein et al., 2015), this erroneous l-C5H2DJK value for F12-TZ (and, in fact, all of its sextic distortion constants, as well) presently stems from a compounding error brought about by the step size and the resulting QFF improperly representing these data. The F12-DZ data are consistent within step size and experimental comparison implying that these data are reliable as are the F12-TZ data behaving in similar ways.

TABLE 2

F12-DZ F12-TZ
Constant Units 0.005 0.010 0.005 Exp.a
A e MHz 290162.5 290162.5 290123.6
B e MHz 2290.1 2290.1 2296.4
C e MHz 2272.1 2272.1 2278.4
A 0 MHz 286248.3 286245.9 287832.8 277600
B 0 MHz 2294.6 2294.5 2307.8 2304.7844
C 0 MHz 2275.7 2275.7 2286.9 2285.8053
D J Hz 92.822 92.831 91.191 104
D JK kHz 70.773 71.920 2,642.5 46.4
D K MHz 22.182 22.180 19.676
d 1 mHz −771.6 −771.6 −775.9
d 2 mHz −285.6 −282.0 1,081.6
H J nHz −558.98 −516.46 −216,800
H JK mHz 238.14 232.78 11,321
H KJ kHz −1.8080 −1.4656 −478.98
H K kHz 6.9698 6.6280 484.19
h 1 nHz −50.873 −105.28 −36970
h 2 mHz 1.1503 1.0644 −0.015785
h 3 nHz 121.91 115.04 −2042.6
μ D 5.94
κ −0.99987 −0.99987 −0.99985

Rotational constants of l-C5H2 compared to previous experimenta.

The c-C3HC2H isomer has a smaller dipole moment than the l-C5H2 isomer at 3.59 D. The c-C3HC2H isomer also shows near prolate character (κ = − 0.98026 at the F12-TZ-cCR level of theory) as exhibited by the rotational constants B0 and C0 being almost the same as shown in Table 3. The F12-TZ-cCR data agrees extremely well with previous Fourier transform spectrometry results (Travers et al., 1997), differing by only 1.1 MHz (0.03%) for the B0 rotational constant, 0.96 MHz (0.03%) for the C0 rotational constant, and even 15 MHz (0.04%) for the A0 rotational constant. Both the F12-DZ-cCR and F12-TZ-cCR methods produce rotational constants closer to experiment than F12-DZ and F12-TZ which in line with previous work (Watrous et al., 2021). Doubling the step size for the OBPs has little-to-no effect in the rotational constants as expected. The S-reduced Hamiltonian quartic and sextic distortion constants are reported in Table 3, and the DK constant compares well with experiment, only differing by 0.2 kHz at the F12-TZ-cCR level of theory. The experimental DJ rotational constant is 288 Hz while the computed DJ rotational constant is 246.14 Hz. However, the computed A-reduced Hamiltonian ΔJ, determined in this work, has a value of 285.28 Hz which aligns closely with the reported experimental value, suggesting a potential misattribution in the experimental work.

TABLE 3

F12-DZ F12-DZ-cCR F12-TZ F12-TZ-cCR
Constant Units 0.005 0.010 0.005 0.010 0.010 0.010 Exp.a
A e MHz 34593.7 34593.7 34768.1 34768.1 34629.3 34835.3
B e MHz 3410.1 3410.1 3424.5 3424.5 3413.1 3429.6
C e MHz 3104.1 3104.1 3117.5 3,117.5 3106.7 3122.3
A 0 MHz 34386.9 34398.1 34578.6 34578.7 34449.4 34654.1 34638.701
B 0 MHz 3406.0 3406.2 3420.9 3420.7 3409.9 3426.0 3424.8768
C 0 MHz 3095.8 3096.1 3,109.8 3109.6 3099.6 3114.6 3113.6386
D J Hz 245.00 245.00 246.72 246.71 244.68 246.14 288
D K kHz 29.813 29.801 29.780 29.788 29.659 29.795 29.5
D JK kHz 105.97 105.80 107.72 106.72 105.79 106.57
d 1 Hz −28.524 −28.523 −28.662 −28.663 −28.472 −28.589
d 2 Hz −19.625 −19.617 −19.581 −19.586 −19.524 −19.570
H J μHz −173.88 −173.55 −172.98 −172.73 −170.73 −171.01
H JK mHz 106.73 106.531 106.24 105.97 104.63 105.22
H KJ Hz −4.0028 −3.9978 −3.9473 −3.9491 −3.8877 −39.167
H K Hz 4.0870 4.0827 4.0363 4.0384 3.9812 40.157
h 1 μHz −13.184 −13.165 −13.022 −13.040 −12.987 −12.952
h 2 μHz 90.284 90.145 89.750 89.589 88.667 88.905
h 3 μHz 18.237 18.222 18.092 18.098 17.999 18.007
μ D 3.59
κ −0.98018 −0.98019 −0.98023 −0.98023 −0.9802 −0.98025

Rotational constants of c-C3HC2H compared to previous experimenta.

Unlike the other two isomers, the bipyramidal C5H2 isomer does not have a dipole due to its D3h symmetry. Even so, the rotational constants for the bipyramidal C5H2 isomer are given in Table 4 for completeness. Additionally, the molecule is oblate and has only B0 and C0 rotational constants. The bipyramidal C5H2 molecule has not been detected in astrophysical observations or even observed experimentally. The F12-DZ and the F12-TZ methods have good agreement differing by only 9.2 MHz for the C0 rotational constant. Hence, the results presented here provide the most accurate predictions of its rotational constants which may be helpful for the accurate kinetic rate determination or the thermochemical analysis that requires the full rotational partition function.

TABLE 4

Constant Units F12-DZ F12-TZ
B e MHz 12733.1 12742.1
C e MHz 9145.2 9153.0
B 0 MHz 12647.4 12656.6
C 0 MHz 9055.4 9063.7
D J KHz 2.979 2.979
D JK kHz 6.770 6.718
D K kHz 1.676 1.751
d 1 mHz 48.6 2.06
d 2 mHz 8.42 1.21
H J mHz 1.736 1.746
H JK mHz −10.886 −11.033
H KJ mHz 9.011 9.935
H K mHz 21.254 20.669
h 1 μHz 0.702 −1.215
h 2 μHz 1.282 −2.913
h 3 μHz 263.914 257.523

Rotational constants of bipyramidal C5H2.

3.2 Vibrational frequencies

The l-C5H2 isomer has the largest anharmonic intensities out of the three C5H2 isomers, as shown in Table 5. The two most intense modes are ν3 with an intensity of 738 km mol−1 at 2076.3 cm−1 (4.81 μm) and ν4 with an intensity of 182 km mol−1 at 1887.5 cm−1 (5.30 μm). These intensities represent the movements in the linear carbon chain and are up to ten times larger than the anti-symmetric stretch in water, which has an intensity of about 70 km mol−1 at the same level of theory. The large intensities of these two frequencies imply that l-C5H2 should be observable right at the edge of the NIRspec instrument onboard JWST in a region often bereft of known transitions for organic molecules. Out of the three levels of theory in this work used to compute intensities, only the B3LYP/N07D results are reported for the l-C5H2 isomer as it is the only method with all real frequencies in line with the present high-level computations. The previous theory used to compute the intensities agrees qualitatively with the order of intensities computed with B3LYP/N07D. Additionally, the N07D basis set is designed to handle hydrocarbon systems like this and has been used to produce anharmonic frequencies in reasonable agreement with experiment (Barone et al., 2008; Barone et al., 2013). However in this case, the anharmonic frequencies produced by B3LYP/N07D fall short in comparison with the fundamental frequencies produced by the F12-TZ level of theory. In contrast, the F12-DZ and F12-TZ anharmonic frequencies have relatively close agreement. The exceptions to this are the modes involving an in-plane bend (IPB) or OPB of the carbon chain, ν10-ν15. The portions of the QFF involving these modes have problems with the cubic and quartic force constants. Those modes are reported as the harmonic values, and most anharmonic corrections are within the margin of error for the levels of theory. A larger step size is also used at the F12-DZ level of theory to combat the OPB problem (Fortenberry et al., 2018; Westbrook et al., 2020; Lee and Fortenberry, 2021; Lee and Fortenberry, 2021). However there is no significant improvement of the issue. As a result, the larger step size is not repeated for the F12-TZ level of theory. This will not affect possible detection via JWST because the NIRSpec and MIRI instruments on the JWST only capture spectra to about 333 cm−1, but the resolution drops for the lower frequencies below 2000 cm−1 since the larger range MIRI instrument does not have the same capabilities as NIRspec. The harmonic frequencies for both the F12-DZ and F12-TZ levels of theory agree well with previous theoretical harmonic frequencies for most modes (Karton and Thimmakondu, 2022), but vary more for the OPB and IPB which is likely due to the aforementioned OPB problem (Westbrook et al., 2020; Lee and Fortenberry, 2021).

TABLE 5

F12-DZ F12-TZ B3LYP/N07D Previous theoryb
Description 0.005 0.010 0.005 Freq f Freq f
ω 1 (b2) C-H Anti-Sym Stretch 3,219.4 3219.4 3215.5 3,199.1 1 3,215.1 0.0
ω 2 (a1) C-H Sym Stretch 3127.7 3127.7 3125.1 3117.5 1 3127.3 0.6
ω 3 (a1) (C1-C2) - (C2-C3) + (C3-C4) - (C4-C5) 2145.3 2,145.3 2,153.5 2212.7 806 2,151.6 677.1
ω 4 (a1) (C1-C2) - (C2-C3) - (C3-C4) + (C4-C5) 1924.4 1924.4 1935.2 1974.6 206 1921.8 176.6
ω 5 (a1) H-C-C Sym Bend 1503.9 1503.9 1506.9 1513.8 9 1,503.5 7.7
ω 6 (a1) (C1-C2) + (C2-C3) - (C3-C4) - (C4-C5) 1349.5 1349.5 1355.8 1369.9 7 1346.9 18.0
ω 7 (b2) H-C-C Anti-Sym Bend 1033.7 1,033.7 1030.7 1031.0 1 1030.3 0.4
ω 8 (b1) C5 OPB 936.0 936.3 941.4 968.6 34 943.4 31.6
ω 9 (a1) (C1-C2) + (C2-C3) + (C3-C4) + (C4-C5) 749.0 749.0 752.2 769.8 1 745.5 0.4
ω 10 (b1) C3-C4 OPB 534.0 534.3 536.1 656.4 7 576.2 2.8
ω 11 (b2) C2-C3 IPB 398.4 398.4 411.7 527.6 4 445.4 0.9
ω 12 (b1) C2-C4 OPB 244.8 244.7 239.9 314.8 7 270.9 8.5
ω 13 (b2) C2-C4 IPB 231.1 231.1 230.9 286.2 7 254.9 5.7
ω 14 (b2) C1-C5 IPB 133.3 133.3 123.2 148.3 1 139.3 0.0
ω 15 (b1) C1 OPB 110.8 110.7 104.3 143.7 2 122.3 3.1
ZPVE 8758.4 8812.5 8948.0
ν 1 (b2) C-H Anti-Sym Stretch 3073.7 3066.1 3078.2 3047.4 1
ν 2 (a1) C-H Sym Stretch 3019.2 3011.6 2,955.4 3013.1 2
ν 3 (a1) (C1-C2) - (C2-C3) + (C3-C4) - (C4-C5) 2098.9 2090.6 2076.3 2170.4 738
ν 4 (a1) (C1-C2) - (C2-C3) - (C3-C4) + (C4-C5) 1898.0 1894.9 1887.5 1944.1 182
ν 5 (a1) H-C-C Sym Bend 1472.0 1467.4 1,43.8 1483.5 6
ν 6 (a1) (C1-C2) + (C2-C3) - (C3-C4) - (C4-C5) 1340.7 1334.1 1318.9 1350.5 6
ν 7 (b2) H-C-C Anti-Sym Bend 1022.5 1018.7 1155.4 1011.6 1
ν 8 (b1) C5 OPB 924.6 923.8 769.0 944.8 35
ν 9 (a1) (C1-C2) + (C2-C3) + (C3-C4) + (C4-C5) 741.0 730.1 756.4 772.4 1
ν 10 (b1) C3-C4 OPB 534.0a 534.3a 536.1a 365.8 7
ν 11 (b2) C2-C3 IPB 398.4a 398.4a 411.7a 285.8 2
ν 12 (b1) C2-C4 OPB 224.8a 244.7a 239.9a 244.3 4
ν 13 (b2) C2-C4 IPB 231.1a 231.1a 230.9a 247.5 9
ν 14 (b2) C1-C5 IPB 133.3a 133.3a 123.2a 151.6 1
ν 15 (b1) C1 OPB 110.8a 110.7a 104.3a 133.7 2

F12-DZ and F12-TZ harmonic and fundamental vibrational frequencies and B3LYP/N07D intensities (in km mol−1) of l-C5H2 compared to previous theory computed at the fc-CCSD(T)/cc-pVTZ level of theoryb.

a

Harmonic values reported.

b

Previous theory from Karton and Thimmakondu, 2022.

For the c-C3HC2H isomer, the vibrational frequencies are in Table 6, and the double-harmonic intensities are in Table 7. The c-C3HC2H isomer has two intense peaks with the most intense peak being the acetylene C-H stretch, ν1, at 3,347.8 cm−1 (2.99 μm) with an anharmonic intensity of 84 km mol−1 at the B3LYP/N07D level of theory. The second most intense peak is the C5-C6-H7 in-plane bend (IPB), ν11, at 577.9 cm −1 (17.3 μm) with an intensity of 52 km mol−1. The intensity changes depending on which level of theory is used to calculate the double-harmonic intensities, but all three methods computed for the intensities agree on the qualitative order of intensities for the modes, as does the previous theory (Karton and Thimmakondu, 2022). The intensities for c-C3HC2H are not as strong as the intensities for l-C5H2, but are still strong enough for detection.

TABLE 6

F12-DZ F12-DZ-cCR F12-TZ F12-TZ-cCR Previous Theoryb
Description 0.005 0.010 0.005 0.010 0.010 0.010
ω 1 (a′) Acetylene C-H Stretch 3454.7 3454.7 3459.8 3459.8 3,454.2 3460.6 3457.0
ω 2 (a′) Ring CH Stretch 3261.1 3261.1 3266.4 3266.4 3,259.9 3266.7 3261.4
ω 3 (a′) C5 In-Plane Motion 2166.4 2166.4 2172.6 2172.6 2,167.9 2176.2 2163.8
ω 4 (a′) C4-C5 Out-of-Plane Motion 1713.4 1713.4 1719.3 1719.3 1715.1 1722.9 1708.0
ω 5 (a′) (C2-C3) + (C3-C4) Stretch 1278.5 1,278.6 1,283.9 1283.9 1279.7 1286.5 1269.8
ω 6 (a′) (C2-C3) - (C3-C4) Stretch 1117.4 1117.4 1122.5 1122.5 1119.8 1126.1 1107.9
ω 7 (a′) C3-C2-H1 IPB 949.9 949.9 953.8 953.8 948.5 952.3 945.8
ω 8 (a) C3-C2-H1 OPB 892.9 893.2 895.9 895.9 893.7 898.2 891.2
ω 9 (a) C5-C6-H7 OPB 710.0 710.0 714.8 714.8 713.9 717.8 705.4
ω 10 (a′) C4-C5 Stretch 696.0 696.0 698.6 698.6 697.5 700.9 692.1
ω 11 (a′) C5-C6-H7 IPB 604.4 604.4 608.7 608.7 611.3 615.6 601.8
ω 12 (a) C4-C5 Out-Of Plane Motion 510.4 510.4 511.6 511.6 517.7 521.7 520.4
ω 13 (a′) C4-C5 In Plane Motion 498.8 498.8 502.4 502.4 504.3 508.9 500.1
ω 14 (a) C5-C6 Out-Of-Plane Motion 201.8 201.8 202.8 202.7 202.6 203.6 212.9
ω 15 (a′) C5-C6 In-Plane Motion 189.2 189.2 190.7 190.7 190.8 192.0 193.0
ZPVE 7869.7 8908.0 9383.5 9115.5 9234.5 9069.4
ν 1 (a′) Acetylene C-H Stretch 3412.6 3341.7 3311.3 3328.8 3346.4 3347.8
ν 2 (a′) Ring CH Stretch 3034.4 3,102.4 3137.1 3139.1 3145.4 3,127.1
ν 3 (a′) C5 In-Plane Motion 2168.0 2131.8 2,123.4 2,128.7 2,124.3 2135.5
ν 4 (a′) C4-C5 Out-of-Plane Motion 1673.6 1675.5 1675.2 1681.4 1685.3 1706.8
ν 5 (a′) (C2-C3) + (C3-C4) Stretch 1138.0 1,199.5 1,262.1 1,265.1 1,285.6 1256.3
ν 6 (a′) (C2-C3) - (C3-C4) Stretch 1194.6 1,113.6 1073.5 1090.0 1073.9 1061.0
ν 7 (a′) C3-C2-H1 IPB 949.9a 891.7 944.2 958.9 948.5a 916.2
ν 8 (a) C3-C2-H1 OPB 892.9a 848.5 895.9a 865.1 893.7a 898.2a
ν 9 (a) C5-C6-H7 OPB 710.0a 684.7 711.6 689.8 705.2 646.6
ν 10 (a′) C4-C5 Stretch 696.0a 698.2 675.1 690.3 674.7 700.9a
ν 11 (a′) C5-C6-H7 IPB 555.1 574.6 574.4 585.6 595.0 577.9
ν 12 (a) C4-C5 Out-Of Plane Motion 510.4a 510.4a 511.6a 511.6a 517.7a 521.7a
ν 13 (a′) C4-C5 In Plane Motion 498.8a 476.6 502.1 506.6 504.3a 500.7
ν 14 (a) C5-C6 Out-Of-Plane Motion 201.8a 201.8a 202.8a 202.7a 202.6a 203.6a
ν 15 (a′) C5-C6 In-Plane Motion 189.2a 189.2a 190.7a 190.7a 190.8a 169.5

Harmonic and fundamental vibrational frequencies of c-C3HC2H compared to previous theory computed at the fc-CCSD(T)/cc-pVTZ level of theoryb.

a

Harmonic values reported.

b

Previous theory from Karton and Thimmakondu, 2022.

TABLE 7

MP2/TZ B3LYP/TZ B3LYP/N07D Previous theorya
Description Freq f Freq f Freq f f
ω 1 (a′) Acetylene C-H Stretch 3474.6 85 3461.2 90 3478.7 100 71.1
ω 2 (a′) Ring CH Stretch 3283.4 2 3234.4 1 3250.2 1 1.1
ω 3 (a′) C5 In-Plane Motion 2145.1 6 2192.6 3 2193.7 3 10.6
ω 4 (a′) C4-C5 Out-of-Plane Motion 1703.2 4 1719.7 5 1724.9 6 5.0
ω 5 (a′) (C2-C3) + (C3-C4) Stretch 1286.9 32 1280.3 38 1275.1 39 41.2
ω 6 (a′) (C2-C3) - (C3-C4) Stretch 1128.9 3 1,108.7 8 1103.3 7 6.5
ω 7 (a′) C3-C2-H1 IPB 944.6 3 951.9 2 943.8 3 2.3
ω 8 (a) C3-C2-H1 OPB 902.0 13 899.9 15 880.8 17 17.1
ω 9 (a) C5-C6-H7 OPB 687.5 31 756.5 27 744.4 36 28.7
ω 10 (a′) C4-C5 Stretch 704.2 2 708.8 1 706.5 1 1.7
ω 11 (a′) C5-C6-H7 IPB 614.5 45 610.1 54 595.4 65 49.2
ω 12 (a) C4-C5 Out-Of Plane Motion 531.9 2 549.5 5 562.2 2 1.9
ω 13 (a′) C4-C5 In Plane Motion 503.0 3 530.7 4 538.2 2 2.4
ω 14 (a) C5-C6 Out-Of-Plane Motion 206.5 1 218.6 1 238.4 1 0.9
ω 15 (a′) C5-C6 In-Plane Motion 188.0 7 202.3 7 211.9 6 5.7
ν 1 (a′) Acetylene C-H Stretch 3,351.6 78 3,335.6 81 3353.6 84
ν 2 (a′) Ring CH Stretch 3,156.9 1 3106.0 1 3117.9 1
ν 3 (a′) C5 In-Plane Motion 2113.8 3 2152.0 2 2152.1 2
ν 4 (a′) C4-C5 Out-of-Plane Motion 1667.0 3 1,677.7 4 1681.0 4
ν 5 (a′) (C2-C3) + (C3-C4) Stretch 1253.1 29 1,249.3 36 1245.1 34
ν 6 (a′) (C2-C3) - (C3-C4) Stretch 1107.2 1 1078.6 3 1075.4 3
ν 7 (a′) C3-C2-H1 IPB 921.5 4 930.7 3 922.3 4
ν 8 (a) C3-C2-H1 OPB 886.1 13 885.1 15 871.0 20
ν 9 (a) C5-C6-H7 OPB 673.0 31 742.5 28 691.3 30
ν 10 (a′) C4-C5 Stretch 703.3 1 696.9 1 696.1 1
ν 11 (a′) C5-C6-H7 IPB 613.0 43 592.7 55 555.0 52
ν 12 (a) C4-C5 Out-Of Plane Motion 532.8 3 545.0 4 508.1 1
ν 13 (a′) C4-C5 In Plane Motion 497.4 4 526.4 4 491.7 9
ν 14 (a) C5-C6 Out-Of-Plane Motion 210.5 1 220.2 1 212.0 1
ν 15 (a′) C5-C6 In-Plane Motion 192.2 7 201.7 7 195.7 5

Intensities in km mol−1 of c-C3HC2H compared to previous theory computed at the fc-CCSD(T)/cc-pVTZ level of theorya.

a

Previous theory from Karton and Thimmakondu, 2022.

For the c-C3HC2H, there are differences in the anharmonic frequencies between the levels of theory and step sizes as shown in Table 6. Fundamental frequencies ν12, ν14, and ν15 produce questionable positive anharmonicities, although they are below or on the lower edge of the range to be detected through the aforementioned instruments on JWST. Additionally, these three modes have a maximum intensity of 5 km mol−1. Both considerations make these frequencies unlikely to be detected. Increasing the level of theory to F12-DZ-cCR improves the anharmonic correction for the ν9, ν10, and ν13 fundamentals. The doubled step size in the OPB coordinates further improves the anharmonic correction for F12-DZ and F12-DZ-cCR. As a result only the doubled step size is calculated at the higher levels of theory due to the increased computational cost. Similarly, this doubled step size helps the anharmonic correction for ν7 and ν8 with F12-DZ and F12-DZ-cCR. There is much less variation in the harmonic frequencies between the levels of theory. Additionally, the harmonic frequencies compare well to previous theory (Karton and Thimmakondu, 2022). Figure 4 shows a simulated spectrum of the F12-TZ-cCR anharmonic frequencies and the B3LYP/N07D intensities with all bands incorporated; only those with notable intensities are present.

FIGURE 4

FIGURE 4

Simulated spectrum of c-C3HC2H.

For the bipyramidal C5H2 isomer, the vibrational frequencies for the F12-DZ and F12-TZ QFFs, shown in Table 8, have close agreement for most of the frequencies. The bipyramidal C5H2 isomer has one intense frequency in which is ν10, the symmetric C2-C3 + C2-C4 stretch, with an intensity of 78 km mol−1 at 426.1 cm −1 (23.5 μm) which is slightly smaller than the c-C3H2H isomer and much smaller than the most intense peaks for the l-C5H2 isomer. Unlike the other isomers, the bipyramidal C5H2 isomer only has three other fundamentals that have intensities over 10 km mol−1 at the B3LYP/N07D level of theory. These are ν4 at 1,273.6 cm−1 (7.85 μm), ν5 at 1,108.7 cm−1 (9.02 μm), and ν8 at 829.5 cm−1 (12.0 μm). While the different methods differ in the quantitative value of the intensities, they again agree qualitatively with each other and with previous theory on what will be the most and least intense peaks (Karton and Thimmakondu, 2022). However only having one fundamental with a large intensity could increase the difficulty for the detection of the bipyramidal C5H2 isomer compared to the other two isomers. The F12-DZ and the F12-TZ QFFs show good agreement for the harmonic and anharmonic fundamental frequencies and the harmonic frequencies further show good agreement to previous theory (Karton and Thimmakondu, 2022). The largest discrepancy arises in ν10, with a difference of 26.5 cm−1, but a majority of the frequencies agree to within 3 cm−1. However, given the greater computational rigor of F12-TZ, its data should be considered the more reliable of the two.

TABLE 8

F12-DZ F12-TZ MP2/TZ B3LYP/TZ B3LYP/N07D Previous theorya
Description Freq f Freq f Freq f Freq f
C-H Sym Stretch 3331.6 3329.5 3376.0 3311.0 3319.9 3331.6 0.0
C-H Anti-Sym Stretch 3330.0 3327.8 3,374.7 30 3309.4 11 3318.5 9 3330.0 12.3
C1-C5 Stretch 1307.1 1308.7 1,302.2 1314.5 1329.5 1299.7 0.0
C1-C Ring - C5-C Ring Stretch 1288.3 1290.4 1,298.0 29 1,289.5 28 1302.8 24 1276.2 19.6
ω 5 (e′) H-CC Sym Bend 1128.2 1126.8 1079.6 5 1129.2 10 1136.8 10 1129.0 8.3
ω 6 (e) H-CC Anti-Sym Bend 1010.9 1008.3 978.1 1017.8 1,024.1 1011.5 0.0
C1-C2,C3,C4-C5 Stretch 852.2 851.5 913.1 837.5 834.4 846.8 0.0
ω 8 (e′) C2-C3 - C2-C4 Stretch 842.5 844.1 813.4 30 850.4 15 857.5 16 839.4 20.4
ω 9 (e) C1-C2 - C2-C5 Stretch 783.8 786.2 807.0 734.2 771.1 777.1 0.0
ω 10 (e′) C2-C3 + C2-C4 Stretch 488.7 489.3 382.4 82 525.9 48 530.7 46 490.7 49.9
ZPVE 9228.0 9187.4
C-H Sym Stretch 3190.5 3190.4 3,240.7 1 3187.4 1 3189.1 1
C-H Anti-Sym Stretch 3146.4 3139.3 3239.6 30 3187.0 10 3188.8 7
C1-C5 Stretch 1250.9 1253.0 1271.2 1 1262.9 1 1283.3 1
C1-C Ring - C5-C Ring Stretch 1273.4 1273.6 1269.6 27 1318.5 27 1334.3 23
ν 5 (e′) H-CC Sym Bend 1126.4 1108.7 1048.7 5 1103.8 9 1108.7 11
ν 6 (e) H-CC Anti-Sym Bend 1009.1 995.2 953.7 1001.5 1001.2 -
C1-C2,C3,C4-C5 Stretch 834.4 832.4 914.3 1 850.4 3 847.0 1
ν 8 (e′) C2-C3 - C2-C4 Stretch 830.1 829.5 800.2 30 836.9 12 842.3 14
ν 9 (e) C1-C2 - C2-C5 756.3 759.2 770.8 719.7 752.9
ν 10 (e′) C2-C3 + C2-C4 452.6 426.1 344.9 78 524.2 50 526.6 47

F12-DZ and F12-TZ harmonic and fundamental frequencies of bipyramidal C5H2 with intensities in km mol−1 compared to previous theory computed at the fc-CCSD(T)/cc-pVTZ level of theorya.

a

Previous theory from Karton and Thimmakondu, 2022.

4 Conclusion

The large intensities for some of the fundamental frequencies in all of the isomers may facilitate the detection of these C5H2 structures via JWST. Such spectral data could lead to the identification for some UIRs as well as unknown transitions of known interstellar molecules such as l-C5H2 and c-C3HC2H. The bipyramidal C5H2 isomer has some of the lowest intensities of the three isomers but still has one peak at 426.1 cm−1 (23.5 μm) with an intensity of 78 km mol−1. The c-C3HC2H isomer has one intense fundamental frequency at 3,347.8 cm−1 with an intensity of 84 km mol−1. The l-C5H2 isomer has the two highest intensities out of the three isomers for its ν4 at 1887.5 cm−1 with a large intensity of 182 km mol−1 and ν3 at 2076.3 cm−1 with a very large intensity of 738 km mol−1 making this fundamental the most likely of the group especially since, again, l-C5H2 has been previously detected via radioastronomy. The F12-TZ methodology produces rotational constants for l-C5H2 within 3 MHz (0.13%) for the B0 and C0 rotational constants. Improving upon this high level of accuracy, the F12-TZ-cCR methodology for c-C3HC2H produces B0 and C0 rotational constants within 1.1 MHz (0.03%) of experiment. This close agreement to experiment lends supports to the accuracy of the other theoretical values, notably the fundamental vibrational frequencies, reported herein. Out of the three C5H2 isomers presented in this work, the c-C3HC2H isomer has the lowest relative energy, with l-C5H2 13.79 kcal mol−1 higher in line with previous work (Seburg et al., 1997). The bipyramidal C5H2 isomer is 44.98 kcal mol−1 higher in energy compared previous computations which places this D3h isomer 100 kcal mol−1 or more higher than other C5H2 isomers (Seburg et al., 1997). The dipole moments for the c-C3HC2H and l-C5H2 isomers are large at 3.59 D and 5.94 D, respectively, which has facilitated the previous detections of the isomers in space through rotational spectroscopy. Overall, the anharmonic vibrational frequencies and rotational constants presented herein may help to facilitate the laboratory or astronomical detection of unknown transitions of known molecules. In particular, the high-intensity fundamental frequencies of each molecule that fall within the high-resolution range of JWST may also help to disentangle some of the heretofore unidentified features in the UIRs.

Statements

Data availability statement

The original contributions presented in the study are included in the article/Supplementary Material, further inquiries can be directed to the corresponding author.

Author contributions

AW, BW, and RF contributed to conception and design of the study. AW performed the computations. AW and BW analyzed the data. AW wrote the first draft of the manuscript, and BW and RF edited the manuscript. RF secured funding for the research and provided administration for the project. All authors contributed to manuscript revision, read, and approved the submitted version.

Acknowledgments

The authors wish to acknowledge funding from NASA grant NNX17AH15G, NSF grant CHE-1757888, NSF grant OIA-1757220, and the University of Mississippi’s College of Liberal Arts as well as computational resources from the Mississippi Center for Supercomputing Research (MCSR).

Conflict of interest

The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

Supplementary material

The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/fspas.2022.1051535/full#supplementary-material

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Summary

Keywords

rotational spectroscopy, vibrational spectroscopy, infrared observations, coupled cluster theory, astrochemistry, carbon chemistry

Citation

Watrous AG, Westbrook BR and Fortenberry RC (2022) Theoretical spectra and energetics for c-C3HC2H, l-C5H2, and bipyramidal D3h C5H2. Front. Astron. Space Sci. 9:1051535. doi: 10.3389/fspas.2022.1051535

Received

22 September 2022

Accepted

25 October 2022

Published

14 November 2022

Volume

9 - 2022

Edited by

Mattia Melosso, Scuola Superiore Meridionale, Italy

Reviewed by

Silvia Alessandrini, Scuola Normale Superiore, Italy

Qian Gou, Chongqing University, China

Updates

Copyright

*Correspondence: Ryan C. Fortenberry,

This article was submitted to Astrochemistry, a section of the journal Frontiers in Astronomy and Space Sciences

Disclaimer

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.

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