Abstract
The main obstacle for designing effective treatment approaches in breast cancer is the extensive and the characteristic heterogeneity of this tumor. The vast majority of critical genomic changes occurs during breast cancer progression, creating a significant variability within primary tumors as well as between the primary breast cancer and their metastases, a hypothesis have already demonstrated in retrospective studies (). A clear example of this is the HER2-positive breast cancer. In these tumors, we can find all of the transcriptional subtypes of breast cancer, even the basal like or luminal A subtypes. Although the HER2-enriched is the most representative transcriptional subtype in the HER2-positive breast cancer, we can find it too in breast cancers with HER2-negative status. This intrinsic subtype shows a high expression of the HER2 and is associated with proliferation-related genes clusters, among other features. Therefore, two hypotheses can be suggested. First, the HER2 amplification can be a well-defined driver event present in all of the intrinsic subtypes, and not a subtype marker isolated. Secondly, HER2-enriched subtype can have a distinctive transcriptional landscape independent of HER2 amplification. In this review, we present an extensive revision about the last highlights and advances in clinical and genomic settings of the HER2-positive breast cancer and the HER2-enriched subtype, in an attempt to improving the knowledge of the underlying biology of both entities and to explaining the intrinsic heterogeneity of HER2-positive breast cancers.
Introduction
Breast cancer (BC) is the most common malignant tumor in women and one of the principal causes of cancer mortality in this sex, despite significant improvements obtained in the lasts decades. Conversely, male breast cancer is a rare disease with an incidence of <1% and mainly classified by immunohistochemistry as a luminal disease (). BC is modeled by a group of heterogeneous diseases, at both an inter- and intra-tumoral level. All of them share a substantial morphological and molecular heterogeneity, what affect to his clinical behavior and therapeutic response. A crucial objective in the treatment of any cancer disease is to perform clinical decisions through a comprehensive insight of the molecular profile of the tumor to predict the probable clinical outcome of the disease individually. By the expansion of high-throughput molecular technologies, we can analyze changes in the genetic, epigenetic and proteomics contexts, so that allows improving in the comprehension of the complexity of BC biology.
One biomarker with reported heterogeneity in BC is the Human Epidermal Growth Factor Receptor 2 (HER2), a component of the EGF receptor (EGFR) family. The overexpression of this biomarker defined the HER2-positive disease. Traditionally, HER2-positive breast cancer (HER2+ BC) has been associated with a worse prognosis and inferior outcomes in survival. However, over the last years, several therapeutic advances have been improved the clinical treatment of HER2+ disease, and thus, its prognosis. After the discovery of the intrinsic subtypes through gene expression analysis, and later transcriptomic and genomic studies, there is sufficient evidence that HER2+ BC is an entity with a large heterogeneity at multiple levels (), including cell-to-cell. There has been discrepancy about the determination of the clinical status of HER2+ over the last years, with several guidelines and updates in order to find a formal and universal consensus. In clinical practice, HER2+ tumors are categorized by immunohistochemistry (IHC) and/or by in situ hybridization (ISH) in order to tailor the different therapeutic approaches ().
The gene expression profiling has had a large-scale impact in the progress about the knowledge of the biological heterogeneity of this tumor (). However, in this ambit, there is a considerable variability as well, what makes it even more difficult to categorize the basis of pathological diagnosis and therapeutic approach. The principal molecular subtypes of BC have widely characterized, and within HER2+ BC the most representative intrinsic subtype is the HER2-enriched (HER2-E). However, we can find HER2+ BC with luminal A, luminal B, or even the basal-like subtype (). The intrinsic subtype HER2-E is defined generally by a higher expression of HER2 at the RNA and protein level than other subtypes, in addition the increased expression of the tumor proliferation-related genes (, ). Recent studies confirm that this subtype obtains the best clinical and therapeutic results by anti-HER2 therapies, with or without chemotherapy, in both adjuvant and neoadjuvant scenarios, and regardless of the clinical status of HER2 (). Nonetheless, no more than 50% of clinically HER2+ tumors are HER2-E, and what is more exciting, we can also find this subtype in clinically HER2-negative BC, which do not receive HER2-therapies since these drugs are not approved for the treatment of clinically HER2-negative breast tumors. Therefore, we consider it is highly important to perform an extensive revision about the latest highlights and advances in clinical outcomes and genomic features within HER2+ BC and its most representative intrinsic subtype, HER2-E, with a previous extensive revision from the state of science in which these advances are based.
Current Classification of Breast Cancer
Intertumoral heterogeneity of BC is initially illustrated with a clinical staging of the disease. The TNM staging system by the American Joint Committee on Cancer and Union for International Cancer Control (AJCC/UICC) adds information about tumor features such as size, regional lymph-node involvement or the presence of distant metastases (). After the clinical diagnosis, the first step is the assessment of histological criteria on the primary tumor obtained by surgery and/or a core biopsy, encompassing morphology-base and immunohistochemical (IHC) analyses for testing the biomarker profile. This is a classical and non-molecular classification of BC, and sets the standard in the usual clinical practice. Classic pathological criteria, such as histological type, tumor size, grade and axillary lymph node status, are relevant for the initial prognostic evaluation (). The expression of hormone receptors [estrogen (ER) and progesterone receptors (PR)] by IHC and the overexpression and/or amplification of HER2 by IHC and/or ISH gives additional predictive value, being elementary for guiding algorithms of treatment (, ), as will be discussed in the following two sections.
Histopathological Subtypes: Morphologic Heterogeneity
The histopathological classification of BC is set by the 2012 World Health Organization (WHO) (). Most of the breast cancers are adenocarcinomas, with around 70–80% defined as invasive ductal carcinomas not otherwise specified (IDC-NOS) (). The rest, around 25–30%, are characterized by “histological special types” such as papilar, metaplastic, cribiform, apocrine, or mucinous carcinomas, among others (). The majority of special types is rare and differ strongly about prognosis and response to the treatments (). The tumor grade is the other important intrinsic characteristic of tumoral heterogeneity (, ).
Immunohistochemistry: ER, PR, and HER2
Via the characterization of ER, PR, and HER2 status, we can divide BC in three phenotypes or entities. Hormone receptor-positive breast cancers are defined as positive by expression of ER and/or PR receptor equal to 1% or higher of invasive cancer cells (). ER and PR receptors are expressed around 80 and 65% of breast cancers, respectively (). Although estrogen receptor-positive tumors co-express PR in the majority of breast cancers, some cases are ER+/PR– and less frequently, ER–/PR+. The response to hormonal therapy seems to be major in breast tumors with positivity for ER and PR, with lower rates in ER+/PR– and ER–/PR+ tumors ().
Approximately 15–20% of BC has HER2 overexpression and/or amplification, and over 50% of these co-expressing hormone receptors (, ). These tumors are called HER2+ BC. The remaining, with negativity for hormonal receptors and HER2, are denominated triple-negative breast cancers. A fourth protein marker, the androgen receptor (AR), is immunoexpressed in 60–80% of breast cancers, with similar proportions to prostate tumors, and specially expressed in HER2+ and triple-negative breast tumors. However, its determination is still not justified in clinical practice as there is no targeted treatment approved for this marker. Other biomarkers with heterogeneous expression include the epidermal growth factor receptor (EGFR), p53, c-myc, and proliferation markers such as Ki-67 (, ). Ki-67 is a nuclear protein, expressed in all phases of the cell cycle except G0, and a cellular marker of proliferation with prognostic and predictive value (, ).
Even so, this current and basic classification of human breast tumors presents a number of important limitations. The main one is the variability in therapeutic response and clinical outcomes, even for tumors with similar clinical and pathological features. Secondly, this classification provides limited knowledge into the biology and the molecular pathways that divide the BC in distinct subtypes and stages, stepping away from the personalized treatment paradigm.
Molecular and Genomic Classification of Breast Cancer
Expression analysis has provided an opportunity to explore comprehensive molecular profiling of BC. Differences in gene expressions patterns display basic alterations in the tumor cell biology and are associated with significant variation in terms of clinical behavior, survival (, –), and treatment outcomes (–). The identification of several molecular subtypes was the first insight into the molecular heterogeneity of the BC (). Five main intrinsic subtypes have been identified based solely on gene expression patterns using DNA microarrays (, ): luminal A, luminal B, HER2 overexpressing or HER2-enriched (HER2-E) and basal like, with another less characterized group named normal breast-like. They are called as “intrinsic subtypes of breast cancer” and they have exposed crucial differences in several aspects. The tumor heterogeneity within hormone receptor-positive breast cancers are encompassed by the luminal A and luminal B subtypes, with better survival outcomes with respect to the non-luminal intrinsic subtypes. The luminal B breast tumor expresses hormonal receptors same as the luminal A subtype, but generally having low PR, high proliferation, high grade and worse response to hormonal therapy. At the molecular level, this subtype seems to be dramatically distinct from luminal A, at levels of gene expression, gene copy, or somatic aberrations. All of these features, confers it worse prognosis than the other luminal intrinsic subtype ().
In 2009, Parker et al. (25) introduced a gene expression-based test named PAM50, which identifies the intrinsic molecular subtypes in four well-established transcriptional subtypes, through the expression of 50 genes in formalin-fixed paraffin embedded (FFPE) tumor tissues: luminal A, luminal B, basal-like, and HER2-enriched (25, , ). The intrinsic subtypes overlap with staining of ER, PR and HER2 protein expression by IHC and complemented with ISH for testing HER2 gene amplification. However, several studies have assessed and compared the classification of breast tumors based on the PAM50 gene expression with the classification based on pathological criteria, and a low concordance rate was found in the majority of these studies (, –). For example, in a combined analysis of data from several studies including a total of 5,994 independent tumor samples, the discordance rate was found to be present in 30.72% across all patients (). The majority of these studies performed central assessment of pathology-based biomarkers, which normally shows less discrepancies than local determination (). Therefore, the two methods should never be considered the same to identify intrinsic biology of BC.
Nonetheless, the diverse genomic landscape of BC is not completely captured through histopathological or transcriptomic analysis. Changes in gene expression patterns are influenced by the underlying genomic structure, and we have evidence that some features of the intrinsic subtypes can be defined by copy number profiling (, , ) The development of next-generation sequencing technologies has allowed for the characterization of the mutational landscape of this disease, with the identification of novel cancer genes that found it to be recurrently mutated in BC (, , , ). The relevant of integration of the intrinsic subtype with genomic analysis are highlighted in one of the most complete and important molecular characterization studies that have ever been performed in BC (). In this study, led by The Cancer Genome Atlas Project (TCGA), more than 600 primary tumors were extensively profiling at the DNA (methylation, copy-number alterations, somatic and germline mutations), RNA (i.e., miRNA sequencing and mRNA expression) and protein levels () (Table 1; Figure 1). After the analysis of more than 300 primary tumors, five different data-types were mixed together in a cluster of 10 clusters. The consensus clustering analysis identified four major groups of BC, which were found to be very-well summarize by the four molecular intrinsic subtypes defined by mRNA expression only () (Figure 2).
Table 1
| Subtype/cluster | Luminal A | Luminal B | Basal-like | HER2-E |
|---|---|---|---|---|
| mRNA expression | High ER cluster; low proliferation signature | Lower ER cluster; high proliferation signature | Basal-signature; high proliferation | HER2 amplicon signature; high proliferation |
| Copy number | Most diploid; many with quiet genomes; 1q, 8q, 8q11 gain; 8o, 16q loss, 11q13.3 amp (24%) | Most aneuploidy; many with focal amp; 1q, 8q, 8p11 gain; 8p, 16q loss, 11q13.3 amp (51%); 8p11.23 amp (28%) | Most aneuploidy; high genomic instability; 1q, 10p gain; 8p, 5q loss; MYC focal gain (40%) | Most aneuploidy; high genomic instability; 1q, 8q gain; 80 lossM 17q12 focal ERRB2 amp (71%) |
| DNA mutations | PIK3CA (49%); TP53 (12%), GATA3 (14%), MAP3K1 (14%) | TP53 (32%); PIK3CA (32%); MAP3K1 (5%) | TP53 (84%); PIK3CA (7%) | TP53 (75%); PIK3CA (42%); PIK3R1 (8%) |
| Protein expression | High estrogen signaling; high MYB; RPPA reactive subtypes | Less estrogen signaling; high POXM1 and MYC; RPPA reactive subtypes | High expression of DNA repair proteins, PTEN and INPP4B loss signature (pAKT) | High protein and phosphoprotein expression of EGFR and HER2 |
Main data about mRNA expression, copy number, DNA mutations and protein expression in the breast cancer tissue samples analyzed in the TGCA project ().
Amp, amplification; mut, mutation. Percentages are based on 466 tumor samples (463 patients).
Figure 1
Figure 2

Distribution of PAM50 intrinsic subtypes within each IHC subtype of the breast cancers analyzed in the TGCA project (
Thus, all breast cancers show significant genetic diversity. Inherited variants, represented by the single-nucleotide polymorphisms (SNPs) and copy number variants (CNVs), can have an impact in a germline genetic landscape of the individual and inducing the cancer development. The single-nucleotide variants (mutations) and copy number aberrations (CNAs) are genomic changes at somatic level, thus variations acquired that contribute to the initiation and the dissemination of sporadic breast tumors (
Table 2
| IntClust | Frequency (n) | Expression (n, %) | Molecular features | PAM50 subtype (n, %) | Prognosis (HR 5, 10 year DSS) |
|---|---|---|---|---|---|
| 1 | 139 | ER+: 123 (88.5%) PR+: 60 (43%) HER2+: 20 (14.4%) | 17q23 amplification High genomic instability | Basal: 9 (6.5%) HER2-E: 21 (15 %) LumA: 11 (7.9%) LumB: 90 (64.8%) Normal: 8 (5.8%) | Intermediate 0.80, 0.69 |
| 2 | 72 | ER+: 69 (95.8%) PR+: 51 (70.8%) HER2+: 3 (4.2%) | 11q13/14 amplificacion High genomic instability | Basal: 2 (2.8%) HER2-E: 6 (8.3 %) LumA: 25 (34.7%) LumB: 36 (50%) Normal: 3 (4.2%) | Poor 0.78,0.51 |
| 3 | 290 | ER+: 278 (95.9%) PR+: 211 (72.8%) HER2+: 1 (0.3%) | Paucity of copy number changes Low genomic instability | Basal: 4 (1.4%) HER2-E: 9 (3.1 %) LumA: 195 (67.9%) LumB: 43 (15%) Normal: 36 (12.5%) | Good 0.93, 0.88 |
| 4 | 343 | ER+: 238 (69.4%) PR+: 155 (45.2%) HER2+: 20 (5.8%) | CNA devoid Low genomic instability | Basal: 64 (18.7%) HER2-E: 34 (10 %) LumA: 106 (31%) LumB: 29 (8.5%) Normal: 109 (31.9%) | Good 0.89, 0.76 |
| 5 | 190 | ER+: 79 (41.6%) PR+: 40 (21.1%) HER2+: 181 (14.4%) | ERBB2 amplification Intermediate genomic instability | Basal: 21 (11%) HER2-E: 108 (56.8 %) LumA: 18 (9.5%) LumB: 33 (17.4%) Normal: 10 (5.3%) | Poor 0.62, 0.45 |
| 6 | 85 | ER+: 123 (88.5%) PR+: 60 (43%) HER2+: 20 (14.4%) | 8p12 amplificacion High genomic instability | Basal: 3 (3.5%) HER2-E: 10 (11.8%) LumA: 23 (27.1%) LumB: 43 (50.6%) Normal: 6 (7.1%) | Intermediate 0.83, 0.59 |
| 7 | 190 | ER+: 187 (98.4%) PR+: 150 (79%) HER2+: 2 (1.1%) | 16p gain, 16q loss, 8q amplificacion Intermediate genomic instability | Basal: 3 (1.6%) HER2-E: 9 (4.8 %) LumA: 123 (65.1%) LumB: 41 (21.7%) Normal: 13 (6.9%) | Good 0.94, 0.81 |
| 8 | 299 | ER+: 297 (99%) PR+: 236 (78.9%) HER2+: 1 (0.3%) | 1q gain, 16q loss Intermediate genomic instability | Basal: 1 (0.3%) HER2-E: 9 (3%) LumA: 192 (64.2%) LumB: 89 (29.8%) Normal: 8 (2.7%) | Good 0.88, 0.78 |
| 9 | 146 | ER+: 125 (85.6%) PR+: 79 (54.1%) HER2+: 10 (6.9%) | 8q gain, 20q amplificacion High genomic instability | Basal: 20 (13.8%) HER2-E: 26 (18%) LumA: 24 (16.6%) LumB: 70 (48.3%) Normal: 5 (3.5%) | Intermediate 0.78, 0.62 |
| 10 | 226 | ER+: 25 (11.1%) PR+: 19 (8.4%) HER2+: 6 (2.7%) | 5q loss, 8q gain, 10p gain, 12 p gain Intermediate genomic instability | Basal: 202 (89.4%) HER2-E: 8 (3.5%) LumA: 1 (0.4%) LumB: 14 (6.2%) Normal: 1 (0.4%) | Poor 0.71, 0.68 |
Main features of the integrative clusters (
IntClust, integrative cluster; DSS, disease-specific survival; ER+, estrogen receptor; PR+, progesterone receptor.
HER2-positive Breast Cancer and HER2-enriched Subtype
A clear example of complex heterogeneity, inter- and intratumoral, is the HER2+ BC. ERBB2/HER2 is an oncogene coding for a tyrosine kinase receptor that activates oncogenic pathways related with increase proliferation, angiogenesis and invasiveness, resulting in an highly aggressive neoplasm with poor outcomes that others BC (
So far, the HER2+ BC has been considered as a simple entity. Although the HER2 receptor itself has a dominant role, and the efficacy of the anti-HER2 agents support it, it is increasing the evidence that HER2 is a phenotype with one of the most extensive and specific heterogeneity (
Immunohistochemistry Criteria: Past, Present, and Future
The HER2 status assessment was establishment by The American Society of Clinical Oncology and the College of American Pathologists (ASCO/CAP), with the publication of guidelines with recommendations for testing the level of HER2 protein overexpression by IHC and the HER2 gene amplification determined by ISH, both on FFPE breast tumor tissues. The first ASCO/CAP guideline was published in 2007 (71), and updated in 2013 (72, 73) and 2018 (
Table 3
| 2013 ASCO/CAP recommendations | 2018 ASCO/CAP recommendations | |
|---|---|---|
| HER2 IHC CRITERIA | ||
| Specimens to be tested | All newly diagnosed patients with breast cancer must have a HER2 test performed. Patients who then develop metastatic disease must have a HER2 test performed in a metastatic site, if tissue sample is available. | No change |
| HER2 score 0 (negative) | No staining is observed or membrane staining that is incomplete and is faint/barely perceptible and within ≤ 10% of tumor cells. | No change |
| HER2 score 1+ (negative) | Incomplete membrane staining that is faint/barely perceptible and within >10% of tumor cells. | No change |
| HER2 score 2+ (equivocal) | • Circumferencial membrane staining that is incomplete and/or weak/moderate and within >10% of tumor cells, or • Complete and circumferential membrane staining that is intense and within ≤ 10% of the invasive tumor cells. | • Weak to moderate complete membrane staining observed in >10% of tumor cells. • Basolateral staining for HER2 in a rare subtype of breast cancer with micropapillary histology and circumferential staining that is intense but <10% or the tumor cells. |
| HER2 score 3+ (positive) | Circumferential membrane staining that is complete, intense, and with >10% of tumor cells that must show homogeneous, darl circumferential (chicken wire). | No change |
| HER2 ISH CRITERIA | ||
| Amplificacion | Dual-probe Her2/CEP17 ratio ≥2.0; with an average Her2 gene copy number ≥4.0 signals/cell (Group 1) Dual-probe Her2/CEP17 ratio <2.0 with an average Her2 gene copy number ≥6.0 signals/cell (Group 3) Dual-probe Her2/CEP17 ratio ≥2.0 with an average Her2 gene copy number <4.0 signals/cell (Group 2) | Dual-probe Her2/CEP17 ratio ≥2.0; with an average Her2 gene copy number ≥4.0 signals/cell (Group 1) Dual-probe Her2/CEP17 ratio <2.0 with an average Her2 gene copy number ≥6.0 signals/cell (Group 3)† Dual-probe Her2/CEP17 ratio ≥2.0 with an average Her2 gene copy number <4.0 signals/cell (Group 2)† If a case has is Group 3 and 2, a definitive diagnosis will be rendered based on additional work-up. If not already assessed by the institution or laboratory performing the ISH test, IHC testing for HER2 should be performed using sections from the same tissue sample used for ISH, and the slides from both ISH and IHC should be reviewed together to guide the selection of areas to score by ISH. |
| Equivocal | Single-probe average Her2 gene copy ≥4.0 and ≤ 6.0 signals/cell Dual-probe Her2/CEP17 signal ratio of <2.0 with an average Her2 gene copy number ≥4.0 and ≤ 6.0 signals/cell (Group 4). | Dual-probe Her2/CEP17 signal ratio of <2.0 with an average Her2 gene copy number ≥4.0 and ≤ 6.0 signals/cell (Group 4) If a case has an Her2 gene copy ≥4.0 and <6.0 signals/cell ((Group 4)†, formerly diagnosed as ISH positive for HER2, a definitive diagnosis will be rendered based on additional work-up. If not already assessed by the institution or laboratory performing the ISH test, IHC testing for HER2 should be performed using sections from the same tissue sample used for ISH, and the slides from both ISH and IHC should be reviewed together to guide the selection of areas to score by ISH. |
| Non-amplification | Single-probe average Her2 gene copy <4.0 signals/cell Dual-probe Her2/CEP17 signal ratio of <2.0 with an average Her2 gene copy number of <4 signals/cell (Group 5) | No change |
| Aceptable (IHC and ISH) tests | Should preferentially use an FDA-approved IHC, brightfield ISH, or FISH assay | No change |
2018 ASCO/CAP summary recommendations [original recommendations and focused update recommendations (
CAP, College of American Pathologists; CEP17, chromosome enumeration probe 17; ER, estrogen receptor; FDA, US Food and Drug Administration; FISH, fluorescent in situ hybridization; HER2, human epidermal growth factor receptor 2; IHC, immunohistochemistry; ISH, in situ hybridization.
In the 2013 Guideline Update, the work-up of cases in the less common dual-probe ISH categories (groups 2 to 4) include only ISH as additional work-up on diagnosis.
Table 4
| Group | Biology | HER2/CEP17 ratio | HER2 copy number | 2018 ASCO/CAP recommendation |
|---|---|---|---|---|
| 1 | Classic HER2 amplified cancer¶ | ≥2.0 | ≥4.0 | Positive |
| 2 | Monosomy 17† | ≥2.0 | <4.0 | Negative, unless concurrent IHC 3+ |
| 3 | Co-amplification, previously polysomy 17† | <2.0 | ≥6.0 | Negative, unless concurrent IHC 2+ or 3+ |
| 4 | Borderline/equivocal† | <2.0 | ≥4.0 and <6.0 | Negative, unless concurrent IHC 3+ |
| 5 | Classic HER2 non- amplified cancer¶ | <2.0 | <4.0 | Negative |
Summary of test result scenarios and recommended final HER2 status (
Around 95% of breast tumors tested for HER2 by dual-probe ISH correspond to group 1 (HER2 positive) and group 5 (HER2 negative).
The overall prevalence of subgroups 2, 3, and 4 among all breast cancers undergoing HER2 testing is estimated to be about 5%, but within and individual laboratory, the frequency ISH results can be increased.
The concordance between HER2 gene status and HER2 protein expression is generally high, even though discordance between IHC and ISH assay is not uncommon. Both methods detect biological different targets, HER2 protein and HER2 gene expression, respectively, and each assay has its own advantages and disadvantages. The main discordant results are caused by tumor heterogeneity (
HER2 IHC and HER2 ISH tests are employed to select patients for HER2-targeted therapy, and each assay have their advantages and weakness. With the object of improving the assessment of the individual HER2 ITH in tumor samples, Nitta and colleagues, elaborated and validated a protocol in FFPE xenograft tumor tissue sections and in FFPE BC tissue-microarray (TMA) slides, that allows simultaneous brightfield-microscopy detection of HER2 protein and HER2 gene expression, called first tricolor HER2 gene-protein assay (GPA) (82). This test exposed the heterogeneity of HER2 protein expression in different BC cells populations (82). A recent study with this assay reported relevant and clinical implications of this intra-heterogeneity (83). Through the combined assessment of HER2 gene amplification and HER2 protein status, five patterns were established. Three of them (type 3 to 5) were defined as a heterogeneous HER2 status and if the tumor case presented any of these types, it related to have ITH. Type 1 (homogeneous HER2 gene amplification and HER2 protein overexpression in all tumor cells) and type 2 (homogeneously amplified HER2 gene tumor cells, but without HER2 protein overexpression) were defined as homogenous HER2 status. The type 1 and type 2 were previously reported as “micro-heterogeneity” (
Molecular Portraits
HER2+ BC has been historically divided in two distinct diseases based on the expression of hormonal receptors, while the gene expression analyses have proved that HER2+ BC is constituted of all the main intrinsic subtypes. In the HR+/HER2+ BC, two intrinsic subtypes are predominantly isolated: Luminal B and HER2-E (
The concept of intrinsic subtypes has provided large insights into the heterogeneity of HER2+ disease. Prat et al. performed an analysis with data of TCGA (
In the study about the ten integrative clusters previously described (
The TCGA dataset study also offers the opportunity to examine additional characteristics of the intrinsic subtype based on HER2 status (
Thanks to WGS data the authors obtained information about the amplification process itself and about how and maybe when it is arising. The process was consistent with a breakage-fusion-bridge (BFB) folding mechanism, supported by the sequence of copy numbers and the orientation of clipped reads (88, 92). However, the present of long distance and inter-chromosomal rearrangements supported that the amplification is a complex phenomenon, probably comprising multiple amplicons on the same or different chromosomes and several interlaced mechanisms (88). All of this suggests that HER2 amplification, although probably strongly selected, is an embedded event that is superimposed on the standard time course of the breast carcinogenesis (88).
Another relevant article recently published, with genomic and transcriptome analysis too, concluded in a similar theory: HER2 could be defined as a pan-cancer phenomenon (93). The authors explored genomics data (RNA sequencing, expression and copy number changes) across three cohorts of patients [TGCA (
Clinical Implications
Trastuzumab was approved in 2001 for metastatic BC patients after the results reported by Slamon et al. (
After the first clinical trial of a HER2-targeted therapy for BC (
The relationship between the grade of HER2 amplification or protein overexpression and the measure of benefit from the different anti-HER2 therapies, has been largely assessed in both early and metastatic disease studies. Available evidence supports a higher probability of success to these therapies in tumors with an increased HER2 protein expression or greater HER2 mRNA levels, although lower HER2 expression or mRNA levels have been associated with clinical benefit too (95–101). Several studies in the neoadjuvant context, have showed an association between rates of pathological complete response (pCR) and a higher HER2 amplification, increased HER2 mRNA levels or HER2 protein overexpression (99–101). In adjuvant studies, such association not impacted either DFS or OS. What's more, centralized laboratory analysis of HER2 testing in the NSABP-B31 (102) and NCCTG N9831 (103) adjuvant trastuzumab trials found a treatment benefit in women with HER2-negative tumors.
Respect to the expression of HR, in the neoadjuvant setting different trials has exhibited heterogeneous response rates after neoadjuvant with chemotherapy and anti-HER2 therapy between hormone receptor-positive and receptor-negative tumors, that is not limited to trastuzumab (
Another example that confirm the clinical impact of the HER2 heterogeneity is a phase II study led by the Danna-Farber Cancer Institute and recently presented at ASCO 2019 (104). In this clinical trial, the patients received neoadjuvant treatment with 6 cycles of T-DM1 plus pertuzumab. The authors assessment the heterogeneity in basal time (by baseline ultrasound-guide core biopsies from two distinct areas of each tumor), and this entity was defined as at least one of the six areas with either (1) HER2 positivity by ISH in more than 5% and <50% of tumor cells, or (2) a tumoral area with negative result for HER2. Among the 164 patients included, the heterogeneity in HER2 was identify in 10% of evaluable cases without any pCR among cases classified as heterogeneous, being the Residual Cancer Burden (RCB) III the pathological response more frequent in these patients. Secondary analysis also demonstrated a significant relation between pCR (or RCB-0) and HER2 3+ vs. HER2 2+ by IHC. The association between heterogeneity and pCR remained significant when adjusted by hormone receptor status and HER2 IHC measurement (104). These findings, as well as those previously described by Nitta et al. (83), confirm that the ITH is a distinct entity, more diverse than we could expect with the classic pathological evaluation. The heterogeneity in HER2+ BC exist and the treatment of these patients only with anti-HER2 therapies can be insufficient. This entity may need treated with chemotherapy plus anti-HER2 drugs and with novel treatment approaches.
Sensitivity to Anti-HER2 Based Chemotherapy
The impact of the intrinsic subtyping has been researched retrospectively, either trials evaluating anti-HER2 based chemotherapy in the neoadjuvant [i.e., NeoALTTO (105), CALGB-40601 (84), NOAH (
Sensitivity to Dual HER2 Blockade-Only
Nowadays, an area with great interest for the oncologist community is to identify what patients might be treated with a regimen based on dual HER2 blockade without chemotherapy. It has been presented results of several neoadjuvant studies, which submit that a subgroup of patients with HER2+ BC are especially sensitive to the dual HER2 blockade, achieves pCR rates around 70%, so that could potentially be treated without chemotherapy (109).
The HER2-E breast tumors are driven by HER2/EGFR signaling, such as it showed, through a silico and omyc analyses, in the TCGA breast cancer project (
Immune Infiltration
The tumor-infiltrating lymphocytes (TILs) are white bloodstream cells that migrate toward the tumor. In this heterogeneous group of cells, we have found several types of white cells, including T cells, B cells, and even Natural-Killer (NK) cells, although the T cells are the most representative. Overall, TILs comprising the majority of mononuclear immune infiltrates from the innate and adaptive immune response, with rates that depending of tumor type and stage. An important feature of these cells is that their functions changes dynamically, throughout tumor progression and in response to oncology treatments, being able to acquire dramatically opposite functions. The TILs represent pre-existing anti-tumor immunity, with prognostic relevance and predictive value in BC, especially for HER2+ and triple negative breast cancers (110, 111), although the BC has not classically been considered as an immunogenic neoplasm. In contrast to mucosal tissues, normal breast tissue contain limited aggregates of immune cells (112).
In HER2+ BC patients, the TILS are linked to favorable long-term prognosis and survival outcomes, both on early (110, 113–115) and metastatic disease (116). Within HER2+ BC, non-luminal subtypes have the highest levels of TILs, especially the HER2-E intrinsic subtype (
However, in multivariable models adjusted for PAM50 subtypes, TILs seems lost their significant association with better outcomes, due that the intrinsic subtype profiling appears encompasses the information provided by TILs (
Therapeutic Resistance
Different resistance mechanisms to anti-HER2 therapy have been described, which mostly favoring the reactivation of the HER2 pathway or its downstream signaling (109, 120). Most of the therapeutic failures in the treatment of HER2+ BC come from acquired resistance by sub-clones of cells that are highly selected by the therapeutic pressure. The real prevalence and clinical impact of these mechanisms remain largely unclear, majority of them involve genetic or epigenetic aberrations, and have been mainly described in relation to single HER2 blockade (120). Therefore, these mechanisms should clearly be reviewed, because antiHER2 combinations could select different alterations respect to single HER2 blockade.
Among the main mechanisms described we have (1) an incomplete blockade of the HER2 receptor with the activation of compensatory mechanisms by the HER2 receptors family; (2) the activation of alternative receptor tyrosine kinases (RTKs) or other membrane receptors outside of the HER2 family [such as insulin-like grow factor 1 receptor (IGF-1R), AXL Receptor Tyrosine Kinase (AXL) or MET (121)] and (3) the alterations in downstream signaling pathways, especially in the PI3K/AKT/mTOR axis. The hyperactivation of PI3K/AKT/mTOR pathway is the best characterized and seems to be the alteration most important to initiate and perpetuate the resistance to anti-HER2 therapies in HER2+ tumors with any degree of the hormone receptor expression (120). Activating mutations in PIK3CA (122) or reduced levels of tumor suppressor genes (mutations or loss of PTEN, and loss of INPP4-B, among others) are the main molecular alterations than maintain this hyperactivation. The role of targeting these pathways has been evaluated in numerous randomized clinical trials. Among these trials, we have the BOLERO-1 and BOLERO-3, both evaluating the role of everolimus, an mTOR inhibitor, in combination with trastuzumab plus paclitaxel as first-line treatment (BOLERO-1) (
Another relevant mechanism recently proposed is related to the activity of the cyclinD1-cyclin-dependent kinase 4/6 (CDK 4/6) axis. Their enhanced activation can be driven by cyclin D1/CDK4 overexpression or CD4 mutations, causing resistance to hormonal treatment in hormone receptor-positive breast cancers (127). We already have preclinical evidence (128, 129) and from controlled trials (130) about the role of Cyclin D1-CDK 4/6 axis in the anti-HER2 resistance. Using transgenic mouse models, Goel et al. (128) showed that the suppression of CDK4 activity reduces TSC2 (tuberin) phosphorylation, with a partial suppression of mTORC1 and, hence p70-S6K activity, which relieve feedback inhibition of EGFR family kinases rendering cells more sensitive to the effects of EGFR/HER2 inhibitors and overcome acquired resistance to anti-HER2 treatment. The chemotherapy-free trastuzumab-pertuzumab-palbociclib-fulvestrant combination tested in neoadjuvant setting, has recently exhibited promising activity in terms of reduction of ki67 and rate of pCR for breast tumors with positivity of HER2+ and hormonal receptors (130). So, the combination of CKD4/6 and HER2 inhibitors could be a valid option to chemotherapy-containing regimens, at least in a subgroup of patients.
So, hypothetically, the vast majority of resistance mechanisms described could be targeted by drugs that are already available, such as inhibitors of ER, cyclins, mTOR or FGFR1 (109, 120). However, the potential therapeutic advantage of combining these drugs with standard anti-HER2 therapy should be weighed against the potential risk of serious toxicities. Moreover, as a result of intra- and inter-tumoral heterogeneity, different mechanisms can co-exist in a same patient, keeping the potential possibility to contemporaneously target all resistant tumor clones. The HER2-E is the second intrinsic subtype, after the luminal A, with greater percentage of aberrations in PI3K/AKT/mTOR axis (by PI3KCA mutations/loss of PTEN) and alterations in RB1 pathway (by Cyclin D1 amplification and/or CDK4 gain). So, if both axis are implicated in the resistance of anti-HER2 treatment, this intrinsic subtype could be the most appropriated to design future clinical trials that testing the role of targeting all pathways simultaneously and to prevent of development of acquired resistances, independently of pathological evaluation of HER2, which does not seem to adequately measure the ITH, an entity already established as other potential resistance mechanism.
Conclusion
To date, amplification and/or overexpression of HER2 remains the only biomarker regarding treatment decisions with anti-HER2 drugs, but it is insufficient itself to clarify the heterogeneous therapeutic outcomes. The complex heterogeneity of the HER2+ BC is a critical aspect, as it has been described at multiple levels: intra-tumoral, at gene expression, transcriptomic and genomic levels. The HER2+ BC do not represent a subtype itself, but are instead dispersed along the whole breast cancer spectrum, from hormone receptor-positive luminal to hormone receptor-negative basal phenotype, with genome variations accordingly to these phenotypes and incidentally defined by a specific gene amplification. Perhaps, combining phenotypic (i.e., gene expression groups) and mechanistic (i.e., co-amplifications) characteristics, may improve the actual classification of HER2+ BC, with the identification of more homogeneous subgroups and improving the knowledge of the genetic mechanisms implicated in the heterogeneity of this disease. This could lead to rational therapeutic strategies, exploring additional pathways and genes co-amplified with ERBB2, especially relevant for patients who show an initial weak response or that exhibit treatment resistance, patients with a particularly poor prognosis.
Although HER2 amplification is traditionally associated with HER2-E transcriptional subtype, these are substantially distinct. HER2 amplification seems an oncogenic driver present in all subtypes in place of a biomarker itself of an intrinsic subtype, and its strong enrichment in the HER2-E subtype has masked the nature of this entity. Taking into consideration only the intrinsic subtype, any prognostic value attributable to clinical and pathological variables such as the degree, ER/PR or HER2 status by IHC and/or ISH, disappears, as happens with the amplification of HER2 isolated taken as a predictive factor itself.
We already have data of efficacy for anti-HER2 therapy in patients with HER2-negative tumors, with a considerable proportion of patients with HER2+ breast cancers not achieving such clinical benefit. Overall, the evidence so far suggests that all BC with HER2-E intrinsic subtype benefit from anti-HER2 treatment. Although much remains to be done, with the data available and presented in this review, it seems that the HER2-E intrinsic subtype would be a more appropriate biomarker to assess the real benefit of anti-HER2 treatment in all phenotypes of BC.
Respecting the actual HER2+ BC therapeutic setting, the most recent studies try to improve the results of patients adding new anti-HER2 drugs, still without a selection by molecular features, thus, achieving a discrete therapeutic benefit in the most of these trials, and increasing toxicity and costs. The intrinsic molecular subtyping of BC fairly has extended our knowledge about the behavior of this tumor and should have an established place in the clinical practice. After this revision, we would like to conclude that the HER2-E subtype should be established itself as the best predictor of prognosis and clinical outcomes of the BC with this intrinsic subtype, what would allow for the extension of the use of anti-HER2 drugs for HER2-negative tumors and to improve the selection of patients with HER2+ BC for combination of anti-HER2 therapies.
Statements
Author contributions
AG-O: authorship and complete writing of the manuscript. AS-M and AR: general review of the manuscript and contribution of bibliography. MC: help with the interpretation of molecular data. MP: contribution and bibliographical guidance and has helped too with the interpretation of molecular data. NE: contribution and bibliographical guidance. EC: general review, partial correction of the manuscript, and contribution of bibliography. All authors read and approved the final manuscript.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
breast cancer, HER2-positive, intrinsic subtype, heterogeneity, HER2-enriched, molecular
Citation
Godoy-Ortiz A, Sanchez-Muñoz A, Chica Parrado MR, Álvarez M, Ribelles N, Rueda Dominguez A and Alba E (2019) Deciphering HER2 Breast Cancer Disease: Biological and Clinical Implications. Front. Oncol. 9:1124. doi: 10.3389/fonc.2019.01124
Received
16 June 2019
Accepted
09 October 2019
Published
29 October 2019
Volume
9 - 2019
Edited by
Mothaffar Rimawi, Baylor College of Medicine, United States
Reviewed by
Howard Donninger, University of Louisville, United States; Parvin Mehdipour, Tehran University of Medical Sciences, Iran
Updates

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Copyright
© 2019 Godoy-Ortiz, Sanchez-Muñoz, Chica Parrado, Álvarez, Ribelles, Rueda Dominguez and Alba.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Ana Godoy-Ortiz anagodort@gmail.com
This article was submitted to Cancer Genetics, a section of the journal Frontiers in Oncology
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