Abstract
Breast cancer is a common malignant tumor in women, with a highest incidence and mortality among all of the female malignant tumors. Notably, targeted therapy has achieved impressive success in the treatment of breast cancer. As one class of the anti-tumor targeted therapeutics, Cyclin-Dependent Kinases 4/6CDK4/6inhibitors have shown good clinical activity in treating breast cancer. Nevertheless, despite the promising clinical outcomes, intrinsic or acquired resistance to CDK4/6 inhibitors has limited the benefits of this novel target therapy. In the present review, we provide an overview of the currently known molecular mechanisms of resistance to CDK4/6 inhibitors, and discuss the potential strategies to overcoming drug resistance improving the outcomes for breast cancer patients treated with CDK4/6 inhibitors.
Introduction
Cyclin-dependent kinases (CDKs) are serine/threonine kinases that play key roles in regulating cell cycle (). CDK 4 and 6, two critical kinases among CDKs mediate the cellular transition from G0/G1 phase to S phase during cell cycle: dysregulation of CDK 4/6, result in uncontrolled cell division. The main effect of CDK4/6 inhibitor is to bind with cyclin D specifically, block cell cycle transformation, and stop cell cycle in G1 phase, thereby inhibiting tumor cell proliferation (). Importantly, CDK4/6 inhibitors have showed great efficacy in treatment of breast cancer. Based on the PALOMA-1trail, FDA approved palbociclib, the first CDK 4/6 inhibitor, in combination with letrozole as first-line treatment for patients with ER-positive, HER2-negative advanced breast cancer (ABC) or metastatic breast cancer (MBC) (). At present, three selective CDK4/6 inhibitors (palbociclib, ribociclib, and abemaciclib) have been approved by FDA (, ). These three CDK4/6 inhibitors are used in combination with endocrine therapies or fulvestrant for patients with ER+ Her− metastatic breast cancer. Clinical trials PALOMA-2, MONALEESA-2, and MONARCH-3 have showed that when combined with aromatase inhibitors, CDK4/6 inhibitors could significantly prolong the progression-free survival in postmenopausal women with HR-positive metastatic breast cancer (–). Nevertheless, despite promising clinical outcomes, acquired or intrinsic resistance to CDK4/6 inhibitors often occurs, and this constitutes a major hindrance to successful treatment and limits the therapeutic benefits of those targeted therapeutics for patients with this disease. Therefore, understanding the molecular mechanisms and pathways involved in resistance to CDK4/6 inhibitors may help develop effective strategies to circumventing drug resistance and selecting patient populations who can benefit from this targeted therapy. Here, we review and discuss the known molecular mechanisms and pathways that modulate the cellular sensitivity or resistance to CDK4/6 inhibitors, and provide our outlook on this subject (–).
Potential Resistance Mechanisms
Breast cancer cells can be intrinsically resistant to CDK4/6 or develop acquired resistance to those agents. CDK4/6 can phosphorylate retinoblastoma protein (Rb1), and the phosphorylation leads to Rb1 functional inactivation, then Rb1 uncoupling from E2Fs transcription factors and release E2Fs. CDK4/6 inhibitors exert their effects through breaking the CDK4/6-Rb-E2F pathway (, ). The tumor cells with loss of Rb1 and lack of the major targets, intrinsic resistance to CDK4/6 inhibitors may occur (, ). The major obstacle to successful treatment with CDK4/6 inhibitors is the acquired resistance that frequently occurs in the patients who have received this therapy. Tumor cells can acquire the ability to escape CDK4/6 action (). Understanding potential mechanisms of acquired resistance to CDK4/6 inhibitors may help find effective ways to preventing or overcoming drug resistance to this class of therapeutics (Figure 1).
Figure 1
Direct Cell Cycle Mechanisms
Loss of Drug Target Genes
RB1
The tumor suppressor Rb1 is a key checkpoint in the cell cycle and a major target of CDK4/6 inhibitors. In both of preclinical and clinical settings, Rb1 mutations were found (
Figure 2

Resistance to CDK4/6 inhibitors: Direct Cell Cycle Mechanism: 1. Loss of drug target genes: APC/CFZR1 promote the phosphorylation of Rb1 and regulate cell transition from G1 to S. knockdown of Rb1 and FZR1 synergistically bypassed cell division arrest induced by the CDK4/6 inhibitor (
Table 1
| Resistance classify | Resistance mechanism | Detection | Overcome |
|---|---|---|---|
| Loss of drug target genes ( | Loss of Rb1 | 1. Cell biology experiments | 1. Restore Rb1 expression |
| 2. Proteomics | |||
| 3. Clinical trial | 2. Bypass way | ||
| Loss of APC/CFZR1 | 1. Cell biology experiments | 1. Restore FZR1 expression | |
| Increased activity of the target genes ( | CDK4 amplification | 1. Cell biology experiments | 1. Knockdown of CDK4 |
| 2. Proteomics | |||
| 3. Immunohistochemistry | 2. Bypass way | ||
| 4. Clinical trial | |||
| CDK6 amplification | 1. Cell biology experiments | 1. Knockdown of CDK6 | |
| 2. Proteomics | |||
| 3. Immunohistochemistry | 2. Bypass way | ||
| 4. Clinical trial | |||
| Abnormal regulations of upstream and downstream kinases ( | Increased expression of CCNE1/CDK2 | 1. Cell biology experiments | 1.CDK2 inhibitor |
| 2. Proteomics | |||
| 3. Immunohistochemistry | 2. Bypass way | ||
| 4. Chip-seq analysis | |||
| CDK7 overexpression | 1. Cell biology experiments | CDK7 inhibitor | |
| 2. Proteomics | |||
| 3. Immunohistochemistry | |||
| E2F overexpression | 1. Cell biology experiments | 1. E2F inhibitor | |
| 2. Proteomics | 2. Inhibition regulate gene or protein downstream of E2F | ||
| 3. Biopsies mRNA gene expression | |||
| p16INK4A (p16) overexpression | 1. Cell biology experiments | 1. Restore p16 expression | |
| 2. Proteomics | 2. p16 methylation | ||
| Loss of PTEN | 1. Cell biology experiments | 1. Restore PTEN expression | |
| 2. Proteomics | |||
| 3. Biopsy | |||
| Smad-TGF-β pathway dysregulation | 1. Cell biology experiments | 1. Activate smad3 | |
| 2. TGF-β inhibitor | |||
| 2. Proteomics | 3. Inhibition of EMT | ||
| Activation of alternate genes (61–67) | WEE1 overexpression | 1. Cell biology experiments | WEE1 inhibitor |
| 2. Proteomics | |||
| MDM2 overexpression | 1. Cell biology experiments | MDM2 inhibitors | |
| 2. Proteomics |
Mechanisms of acquired resistance to CDK4/6 inhibitors: Direct cell cycle mechanisms.
CDK, Cyclin-dependent kinases; Rb1, Retinoblastoma protein1; APC/C, anaphase promoting complex/cyclosome; PTEN, Phosphatase and tensin homolog; TGF-β, transforming growth factor β; WEE1, serine/threonine kinases gene; MDM2, Mouse double minute 2 homolog.
APC/CFZR1
Similar to Rb1, the ubiquitin ligase anaphase promoting complex/cyclosome (APC/C) play an important role in cell cycle regulation. APC/C and pRb interact via the co-activator of APC/CFZR1, providing an alternative pathway to regulate transition from G1 to S by pRb through a post-translational mechanism (
Increased Activity of the Target Genes
CDK4
CDK4 is an important component of the cyclind-CDK4/6-Rb1 pathway, and was observed in 25% luminal B and 14% Luminal A breast cancers (
CDK6
The functions of CDK6 are both kinase-dependent and non-kinase-dependent (
A decrease in ER/PR expression was observed in the tumor specimens from patients receiving treatment of CDK4/6 inhibitor and showing insensitivity to CDK4/6 inhibitors (33). The non-kinase dependent function of CD6 lies in its transcriptional regulation function. In the STAT3 and Cyclin D pathways, CDK6 could up-regulate the transcription of P16 and the expression of VEGF-A that can promote angiogenesis, contributing to the progression and drug resistance of breast cancer (
Abnormal Regulations of Upstream and Downstream Kinases
CCNE1/CDK2
The cyclin E (encoded by CCNE1 gene)-CDK2 complexes play a key role in the cell cycle from G1 to S phase. Cyclin E-CDK2 can phosphorylate Rb1, release E2F, and promote entry into the S phase (35, 36). In an analysis of global gene expressions, increased expression of CDK2 was found in the palbociclib-resistant breast cancer cell lines. Also it was suggested that loss of p21 and p27, which has an inhibitory effect function on CDK2, may represent a mechanism leading to bypass of palbociclib (
CDK7
CDK7, one of the major cell cycle regulators, acts as a CDK-activating kinase (CAK) by maintaining CDK1 and CDK2 activity. CDK7 promotes the cell transition from G2 phase to M phase (38). It has been demonstrated that CDK7 overexpression occurred in the estrogen receptor-positive, palbociclib-resistant breast cancer cells (
E2F
The CDK-Rb-E2F pathway plays a critical role in the control of cell cycle in breast cancer. At the early stage of G1, E2F binds to Rb1 protein and forms a functional complex. Phosphorylation of Rb1 protein by CDK activates E2F. Activation of E2F can promote the transition of cells from G1 phase to S phase. It has been reported that in the CDK4/6 inhibitor-resistant cell lines, the CDK-Rb-E2F pathway reactivate (41). Researchers found that in tumor biopsies resistant to palbociclib, CCND3, CCNE1, and CDKN2D are persistently elevated before palbociclib used, all three genes are known E2F1 transcription targets, suggesting persistent E2F activity in resistant tumors (42). It was also revealed that E2F1 was up-regulated in patients with tumor lymph node metastasis and advanced stage (43) and patients with increased E2F expression was associated with lower overall survival (OS), relapse-free survival (RFS), distant metastasis-free survival (DMFS) (44). Therefore, E2F might be exploited as a therapeutic target both for suppressing drug resistance to CDK4/6 inhibitors and biomarkers and therapeutic targets for breast cancer in breast cancer.
INK
CDK4/6 activity is regulated by the INK4 family proteins (p16INK4A, p15INK4B, p18INK4C, and p19INK4D), can inhibit the expression of CDK4 and lead to cell cycle arrest in the G1/S phase, thus considered as a natural tumor inhibitor (45). The P16 (p16INK4A) protein, encoded by the CDKN2Aink4a gene, play an important role of the INK4 family. It has been reported that CDK4/6 inhibitors can inhibit cancer cell cycle progression because of P16 gene deletion (46). Cancer cells with P16 methylation are more sensitive to palbociclib than those control (47, 48). It has been found that overexpression of p16 and loss of Rb1 often occur simultaneously. When p16 overexpression is accompanied by Rb1 deficiency, CDK4/6 inhibitors are inactive due to the Rb1 deficiency. With the presence of Rb1, overexpression of p16 (be consistent) leads to a decrease of CDK4 and resistance to CDK4/6 inhibitors (
PTEN
PTEN a tumor suppressor gene, is one of the frequently mutated genes in human cancers (49). The increased expression of PTEN leads to the inactivation of CDK, which enables the Rb1 keep dephosphorylating, while binding to transcription factor E2F, which ultimately inhibits cell proliferation. these ways may influence the effect of CDK4/6 inhibitors (49). Researchers analyzed serial biopsies from breast cancer patients treated with the combination of ribociclib and letrozole and found that ablation of PTEN was sufficient to promote resistance to CDK4/6 inhibition (50). The increased AKT expression could reduce PTEN expression and render breast cancer cells resistant to CDK4/6 inhibitors (51). In breast cancer cells, loss of PTEN also conferred resistance to alpelisib. Moreover, loss of PTEN expression can cause dual resistance to CDK4/6 inhibitors and PI3K inhibitors (52) (Figure 2, Table 1).
Smad-TGF-β Pathway
Smad–transforming growth factor β (TGF-β) pathway contributes to G1 arrest in breast cancer cells (53). TGF-β signaling is transduced through Smad2 and Smad3 and forms a complex with Smad4 to regulate target gene expression relevant to cell growth and differentiation (54, 55). Smad3, which has antiproliferative effects, has a key role in TGF-β signaling cascade. Smad3 can regulate cell cycle arrest, and has been shown to be correlated with resistance to CDK4/6 inhibitors (53). Mechanistically, cyclin E-CDK2 and cyclin D1-CDK4/6 complexes can suppress Smad3 through its phosphorylation, and the suppression of Smad3 releases the Rb1-E2F blockade and restore cell cycle arrest in breast cancer cells (53, 56). TGF-β can phosphorylate and activate Smad2 and Smad3 and form a complex with Smad4, and this contributes to the induction and progression of EMT. EMT can promote invasion and metastasis of cancer cells and increase drug resistance (57). Consistently, inhibition of the CDK2-mediated phosphorylation of Smad3 reduces TNBC cell migration and invasion through changes in EMT-related signaling factors (58). According to these findings, resistance of tumor cells to CDK4/6 inhibitors may result from suppression of Smad3 that is associated with the activated cyclin E-CDK2 axis and EMT (
Activation of Alternate Genes Are Involved in the Progression of Cell Cycle
WEE1
WEE1 is a protein tyrosine kinase that phosphorylates CDK1 and CDK2 and causes their inhibition (61). WEE1 inhibits CDK1 to maintain the cell in an inactive state and prevent mitosis. WEE1 also inhibits CDK2 to delay the replication process and allow time for DNA repair. Both of these events occur in breast cancer cells (61, 62). Inhibiting the expression of WEE1 can sensitize the drug resistant cancer cells to CDK4/6 inhibitors, probably because that inhibiting WEE1 can increase the expression of CD4 (63). In the ribociclib-resistant cancer cells, a down-regulation of the G2/M checkpoint was observed (64). Drug resistant cancer cells exhibited collateral sensitivity to the Wee-1 inhibitor, adavosertib (AZD1775). Combined treatment with ribociclib and adavosertib can elicit significantly stronger antiproliferative effect on drug resistant tumor cells cells than ribociclib alone (64) (Figure 2, Table 1).
MDM2
Mouse double minute 2 homolog (MDM2) is a negative regulatory protein of tumor suppressor p53 and can inhibit cellular senescence. MDM2 binds to p53 protein and inhibits the function of this tumor suppressor (65). Overexpression of MDM2 drives breast oncogenesis and blocks apoptosis of breast cancer cells, resulting in resistance of tumor cells to CDK4/6 inhibitors. Therefore, the use of MDM2 inhibitors may reverse cellular resistance to CDK4/6 inhibitors, and this has been in human liposarcoma (66). Indeed, the MDM2 inhibitor, CGM097, in combination with a CDK4/6 inhibitor palbociclib and fulvestrant has shown promising therapeutic benefits in reversing the tumor resistance to CDK4/6 inhibitors and to endocrine therapy (67) (Figure 2, Table 1).
Indirect Cell Cycle Mechanisms
Bypass Pathways of the Cell Cycle
mTOR Pathway
Abnormal activation of mammalian target of rapamycin (mTOR) pathway is an important target for development of anti-cancer drug, the most common mechanism of mTOR activation in breast cancer is via phosphoinositide 3-kinase (PI3K)/protein kinase B (AKT) signaling, PI3K/AKT/mTOR pathway is closely associated with cellular resistance to CDK4/6 inhibitors (
Figure 3

Resistance to CDK4/6 inhibitors: Indirect Cell Cycle Mechanism Bypass pathways of the cell cycle: mTOR activation is via phosphoinositide PI3K/AKT signaling. The PI3K/AKT/mTOR pathway regulate cell signal transduction, have extensive links with other bypasses, for example EMT and TGF-β pathway (
Table 2
| Resistance classify | Resistance mechanism | Detection | Overcome |
|---|---|---|---|
| Bypass pathways of the cell cycle ( | mTOR pathway | 1. Clinical trial | 1. mTOR inhibitor |
| 2. Cell biology experiments | 2. AKT inhibitor | ||
| 3. Immunohistochemistry | 3. PI3K inhibitor | ||
| 4. Animal model | |||
| High expression of AP-1 | 1. Clinical trial | 1. AP-1 inhibitor | |
| 2. Cell biology experiments | |||
| 3. Immunohistochemistry | |||
| FGFR amplification | 1. Clinical trial | 1. Anti-FGFR drug | |
| 2. Cell biology experiments | |||
| 3. Immunohistochemistry | |||
| Loss of ER or PR expression. | 1. Preliminary clinical study | 1. ER regulator/blocker | |
| 2. Chip-seq analysis | 2. Bypass way | ||
| 3. Cell biology experiments | |||
| Other mechanisms ( | EMT | 1. Gene set enrichment analysis (GSEA) | 1. Inhibition of EMT |
| 2. Proteomics | |||
| 3. Immunohistochemistry | 2. Bypass way | ||
| 4. Cell biology experiments | |||
| Immune mechanisms | 1. Proteomics | 1. Immune checkpoint inhibitors | |
| 2. Experimental animal models | |||
| 3. Cell biology experiments | 2. Immunotherapy | ||
| Autophagy | 1. Proteomics | 1. Autophagy inhibitor | |
| 2. Immunohistochemistry | 2. Autophagy proteins |
Mechanisms of acquired resistance to CDK4/6 inhibitors: Indirect cell cycle mechanisms.
PI3K, phosphatidylinositide 3-kinases; AKT, protein kinase B;mTOR, mammalian target of rapamycin; AP-1, Activator protein 1; ER, estrogen receptor;
PR, progesterone receptor; FGFR, fibroblast growth factor; EMT, Epithelial-mesenchymal transformation; receptor.
AP-1
High expression of AP-1 can lead to resistance to CDK4/6 inhibitors. AP-1 family consists of C-FOS, C-Jun, ATF, and MAF, and is involved in the regulation of a variety of genes, including cyclinD (75). The high expression of C-Jun is common in breast cancer and affects the expression of ER (76). It was found in breast cancer cells that are resistant to palbociclib which the transcriptions of AP-1 and C-FOS were increased, and AP-1 blockade in combination with palbociclib could effectively inhibit cell proliferation and reduce pRb and CDK2 levels as compared to single agent treatment (77). These observations suggest that co-treatment with Ap-1 specific inhibitors and CDK4/6 inhibitors may elicit anti-tumor synergistic effects. AP-1 and c-FOS inhibitors have entered Phase II clinical trial (T-5224) (78) (Figure 3, Table 2).
FGFR
The fibroblast growth factor receptor (FGFR) is growth factor receptor tyrosine kinases (79). Development of normal mammary gland requires active transcription of FGFR mediated proto-protein kinase and FGFR is closely associated with the development and progression of breast cancer (80, 81). Based on the combination of letrozole with ribociclib, the clinical trial MONALESA-2 observed that FGFR1 amplification was related to a lower PFS (79). It was also demonstrated that FGFR1 expression was increased in breast cancer MCF-7 cells treated with fulvestrant and palbociclib (82), and lucitanib, an anti-FGFR drug, can decrease drug resistance. As FGFR1 can stimulate the proliferation capacity of cancer cells, inhibiting both FGFR/FGF and the CDK4/6 pathways might be an effective approach to preventing or circumventing resistance to a single agent (Figure 3, Table 2).
ER and PR
ER and PR are the major factors that mediate cyclinD-CDK4/6 activity in estrogen receptor-positive (ER+) and progesterone receptor-positive (PR+) breast cancer cells (
Other Mechanisms
EMT
Epithelial-mesenchymal transformation (EMT) is a biological process in which epithelial cells lose their polarity obtain the ability to invade and migrate. EMT has important roles in tumor cell metastasis, tumor stem cell formation, drug resistance, and other malignant phenotypes. A number of EMT-related signaling pathways are involved in drug resistance in cancer cells (83–85). The gene set enrichment analysis (GSEA) revealed enrichment of pathways that regulate EMT and cancer stem cells (IL-6/Stat3, IL-2/STAT-5, Notch, Wnt) in the cells resistant to palbociclib (
Immune Mechanisms
CDK4/6 inhibitors not only induce tumor cell cycle arrest, but also promote anti-tumor immunity (88–90). In murine models of breast carcinoma, it was found that CDK4/6 inhibitors can activate tumor expression of endogenous retroviral elements that enhance tumor antigen presentation. CDK4/6 inhibitors also suppress the proliferation of suppressive regulatory T cells (Tregs) and enhance the cytotoxic T cell-mediated killing of tumor cells. It was also found that CDK4/6 inhibitors could promote anti-tumor immunity by phosphorylating NFAT4, a transcription factor of T cells, thereby increasing IL-2 levels (91). CDK4/6 inhibitors reduced the proliferation of T cells, but increased tumor infiltration and activation of effector T cells. In addition, CDK4/6 inhibition can augment the response to PD-1 blockade in multiple in vivo murine syngeneic tumor models (91). These studies provide a rationale for combining CDK4/6 inhibitors with immunotherapy to more effectively killing tumor cells and preventing drug resistance (Figure 3, Table 2).
Autophagy
Autophagy is a cellular process that eliminates the damaged or aged cells and is the key machinery for bulk degradation of superfluous or aberrant cytoplasmic components. Autophagy is a double-edged sword in drug sensitivity/drug resistance (92–94). Autophagy could elevate the maintenance of cancer stem cells which may enhance drug resistance, while autophagy may help tumor cells to clear the drug-induced damage which decreasing the impact of chemotherapy and enhances therapeutic response (95, 96). It was demonstrated that CDK4/6 inhibition induces ROS mediated senescence and autophagy, blockade of autophagy significantly improves the efficacy of CDK4/6 inhibition (
Summary and Perspectives
CDK4/6 inhibitors are an effective therapeutic option for patients. A number of clinical trials have demonstrated the effectiveness and benefits of CDK4/6 inhibitors in improving the progression-free survival (PFS) of patients with ER-positive, HER2-negative advanced breast cancer (ABC) or metastatic breast cancer (MBC) when combined with endocrine therapy. The approval of palbociclib was based on the results from the PALOMA-1/TRIO-18, PALOMA-2, and PALOMA-3 trials. In the PALOMA-1 trail, combined therapy of letrozole with palbociclib significantly improved PFS as compared with single-agent letrozole. The PALOMA-2 trial confirmed the clinical activity of combination of palbociclib with letrozole. In PALOMA-3 trial, combined treatment of palbociclib with fulvestrant has shown benefits in patients with HR-positive, HER2-negative ABC or MBC. Thus, FDA approved the combined use of palbociclib with fulvestran based on this trial (
Statements
Author contributions
HJ contributed to the conception of the study. RL finished the first manuscript preparation. BW revised the manuscript. SW, XL, JR, JL, KB, YW helped perform the analysis with constructive discussions. All authors contributed to the article and approved the submitted version.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
breast cancer, CDK4/6 inhibitors, drug resistance, molecular mechanisms, combination administration
Citation
Wang B, Li R, Wu S, Liu X, Ren J, Li J, Bi K, Wang Y and Jia H (2021) Breast Cancer Resistance to Cyclin-Dependent Kinases 4/6 Inhibitors: Intricacy of the Molecular Mechanisms. Front. Oncol. 11:651541. doi: 10.3389/fonc.2021.651541
Received
10 January 2021
Accepted
01 February 2021
Published
26 May 2021
Volume
11 - 2021
Edited by
Jin-Ming Yang, University of Kentucky, United States
Reviewed by
Jinghui Liu, University of Kentucky, United States; Zhuangzhuang Zhang, University of Kentucky, United States
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Copyright
© 2021 Wang, Li, Wu, Liu, Ren, Li, Bi, Wang and Jia.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Hongyan Jia, swallow_jhy@163.com; Yanhong Wang, wangyanhongmail@126.com
†These authors have contributed equally to this work
This article was submitted to Pharmacology of Anti-Cancer Drugs, a section of the journal Frontiers in Oncology
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