Your new experience awaits. Try the new design now and help us make it even better

ORIGINAL RESEARCH article

Front. Oncol., 02 January 2026

Sec. Head and Neck Cancer

Volume 15 - 2025 | https://doi.org/10.3389/fonc.2025.1736505

Reconstituting the head and neck tumor microenvironment with air-liquid interface organoids

Luxi Zheng,&#x;Luxi Zheng1,2†Wei Tang&#x;Wei Tang3†Shuqi Guo,&#x;Shuqi Guo1,2†Lin ChenLin Chen2Shoupeng WangShoupeng Wang2Feng Liu,Feng Liu2,4Jian Meng,,,*Jian Meng1,2,3,4*
  • 1The Xuzhou Clinical College of Xuzhou Medical University, Xuzhou Medical University, Xuzhou, China
  • 2Department of Stomatology, Xuzhou Central Hospital, Xuzhou, Jiangsu, China
  • 3School of Stomatology, Xuzhou Medical University, Xuzhou, China
  • 4School of Stomatology, Shandong Second Medical University, Weifang, China

Introduction: A patient-derived head and neck cancer organoid (HNCO) model that can reconstruct the tumor-immune microenvironment (TME) was established using air-liquid interface (ALI) culture technology. The Tumor-Infiltrating Lymphocytes (TILs) and cancer-associated fibroblasts (CAFs) could be maintained in this model for a certain period of time. This model was confirmed to simulate PD-1/PD-L1 checkpoint blockade, providing a reliable in vitro model for the verification and clinical prediction of the therapeutic effects of relevant immunotherapy drugs for head and neck cancer (HNC).

Methods: Fresh tumor tissue samples were obtained to establish an ALI head and neck cancer organoid (ALI-HNCO) model. The oncological characteristics of the organoids and their homology with parental tumors were verified using histomorphological analysis. T lymphocytes and fibroblasts in the organoids were detected using immunofluorescence staining. After treating with pembrolizumab (a PD-1 inhibitor), the secreted levels of the cytokine interferon-γ (IFN-γ) were measured using an enzyme-linked immunosorbent assay (ELISA), and changes in the ratio of CD8+/CD4+ distributed in the immune microenvironment of the organoid, as well as the expression of CD69+ immune cell subsets, were analyzed using flow cytometry. The FVS staining assay was used to verify the killing of tumor cells by cytotoxic T cells.

Results: The comparison of immunofluorescence in organoids and parental tumor tissues showed that CD3+ lymphocytes and SMA+ cells were also present in the active organoid tissues. Approximately 17.86% (5/28) of the ALI-HNCO model could amplify specific reactive CD8+ T lymphocytes, generating tumor specificity and cytotoxicity.

Discussion: An in vitro HNC immune microenvironment model was successfully constructed using the ALI method. This model maintained the proportions and structures of the components of the original tumor, such as tumor-infiltrating lymphocytes and cancer-associated fibroblasts, for a period of time in vitro, providing an experimental platform for exploring the complex crosstalk between HNC cells and multiple cell colonies. This study preliminarily validated the feasibility of using ALI organoid models to evaluate the efficacy of immunotherapy drugs in treating HNC, providing a reliable and stable preclinical model, and new ideas for drug screening platforms for personalized precision medicine in HNC.

1 Introduction

HNC is a highly prevalent malignancy worldwide. HNC refers to a group of malignant tumors located in the anatomical regions of the head and neck, including the oral cavity, larynx, pharynx and salivary glands. The main pathological type is squamous cell carcinoma (accounting for more than 90%), and also includes adenocarcinoma, mucoepidermoid carcinoma, undifferentiated carcinoma, ductal carcinoma, lymphoma, etc. (13) Currently, the primary treatment for HNC is surgery, supplemented by chemotherapy, radiotherapy, immunotherapy, and other combined treatment methods, which have greatly controlled the progression of the disease and improved the survival rate of patients (35). However, radiotherapy and chemotherapy have toxicity and many side effects, and the sensitivity of patients to treatment varies from person to person. Therefore, exploring new and efficient treatment methods with less toxic and fewer side effects, as well as individualized precision treatments, is of extremely significant importance for clinical therapy and neoadjuvant therapy before radical surgery.

Tumor tissue is a complex structure composed of multiple types of cells, which can continuously evolve and collectively form the tumor microenvironment (TME). The TME is composed of cellular components, such as tumor cells, cancer stem cells (CSCs), TILs, and CAFs, non-cellular components, as well as extracellular matrix (ECM) which are closely related to the occurrence, metastasis, and recurrence of malignant tumors (6, 7). The TME can control the proliferation and metastasis of tumor cells by transmitting signals through the autocrine-paracrine signaling pathway. By inducing immune tolerance and impairing the function of tumor-specific T cells, the TME promotes immune escape (8). A key mechanism for tumor immune escape is the upregulation of immune checkpoint molecules. Clinically, immunotherapy, exemplified by immune checkpoint inhibitors (ICIs) and adoptive cell therapy (ACT), has changed traditional paradigms of cancer treatment. Immune checkpoint blockade can activate anti-tumor immune responses. ICIs have brought significant clinical benefits to some tumor patients and shown extraordinary clinical application value. PD-1/PD-L1 blockade functions by releasing the inhibition of T-cells, thereby enhancing their activation and cytokine production against tumor cells (911). However, the number of patients suitable for this therapy is still very limited. Clinical studies on the first-line immunotherapy agent pembrolizumab have shown that the objective remission rate (ORR) of monotherapy in patients with R/M head and neck squamous cell carcinoma is about 17% (4, 12), and the ORR in advanced salivary gland cancer is about 4.6% (13). The main reason for these low rates is that patients may have congenital resistance to immunotherapy. Therefore, a new preclinical model that truly simulates the human tumor immune microenvironment must be established for the basic and clinical translational research of tumor immunity.

At present, 3D in vitro model technology is represented by organoid and tumor sphere models, and also includes air-liquid interface patient-derived organoids (ALI-PDO), microfluidic culture models, and 3D bioprinting models based on tissue engineering (1418). Some previous in vitro 3D models lacked matrix components, including immune cells, which limited their application in studying the TME (1921). However, recently, with the evolving progress and optimization of in vitro 3D culture technology and models, an increasing number of models have been established that can reshape the immune microenvironment in vitro and can be applied in fields such as patient efficacy evaluation and personalized treatment, drug screening (22), immunotherapy (23), and ACT studies (24). The ALI culture method is a special organoid culture model. Unlike the insufficiency of the co-culture model in evaluating the TME, the tumor organoids in this system retain the original tumor’s pathological features and genetic alterations while sustaining TILs and CAFs, thereby providing a superior model that closely mimics the in vivo tumor microenvironment (15). This method provides an overall strategy for in vitro immune TME modeling and can be used to explore the complex crosstalk among multiple different cell populations. Air-liquid interface patient-derived tumor organoids (ALI-PDTO) simulate the response process in tumor immunotherapy, which is of great significance for predicting the efficacy of and sensitization response to ICB therapy. The ALI culture of organoids has been reported globally in fields such as non-small cell lung cancer, adenocarcinoma, epithelioid sarcoma, and clear cell renal cell carcinoma (15, 25, 26). However, no studies have specifically focused on head and neck malignant tumors.

To reconstitute the tumor immune microenvironment of head and neck cancer in vitro, we established patient-derived head and neck cancer organoids using the ALI culture method. This model preserves tumor heterogeneity and simultaneously reconstructs key components of the TIME, allowing long-term maintenance of patient-derived immune cells and cancer-associated fibroblasts. Our study further demonstrated that ALI PDTOs can functionally simulate PD-1/PD-L1 checkpoint blockade. Treatment with the anti-PD-1 activated and proliferated tumor-infiltrating lymphocytes (TILs) in the ALI PDTOs, triggering a cytotoxic response. This model provides a valuable platform for deepening the understanding of tumor–immune microenvironment interactions, contributes significantly to tumor immunotherapy research, and holds potential for promoting the clinical translation of personalized immunotherapies.

2 Materials and methods

2.1 Sample source

All patients with HNC were recruited from Xuzhou Central Hospital. The eligibility criteria were as follows: patients with primary head and neck cancer who were scheduled for biopsy or lesion resection. We excluded those who had received any preoperative neoadjuvant therapy, including radiotherapy, chemotherapy, targeted therapy, immunotherapy, or other molecular treatments. The pathological types of all HNC samples were identified by the Pathology Department of Xuzhou Central Hospital, and the samples were then processed and tested. This study was approved by the Ethical Review Committee for Biomedical Research of Xuzhou Central Hospital. (Approval Number: XZXY-LK-20250115-0011) Before collecting specimens, the patients and their families provided signed informed consent.

2.2 Materials

The reagents and materials used in this study are listed in Table 1. All compounds were obtained commercially according to the specifications detailed in the table.

Table 1
www.frontiersin.org

Table 1. Key resources table.

2.3 Establishment of the HNCO model using the ALI method

Fresh HNC tissues were obtained through biopsy or surgical resection, stored in 20% fetal bovine serum (FBS)-DMEM, and transported on ice to our laboratory for ALI organoid culture within 2 h. The tumor tissue was cut into < 0.3 cm diameter fragments, mixed with recombinant collagen solution without enzymatic digestion, and evenly spread over pre-cured collagen gel in the internal Transwell insert with a permeable membrane at the bottom. The insert was placed in the cell culture dish and culture medium was added between the culture dish and the insert to form a dual-disc ALI culture system (Figure 1). In this way, the upper part of the tumor tissue and collagen mixture was directly exposed to air, and the culture medium penetrated the bottom of the collagen through micropores, forming an ALI culture model. ALI-HNCO collagen gel was mixed on ice with Cellmatrix I A solution, 10× Ham’s F-12 concentrated sterile medium, and sterile recombination buffer solution at a ratio of 8:1:1, containing final concentrations of 200 mmol/L HEPES, 0.05 mol/L NaOH, and 2.2 g NaHCO3 per 0.1 L (15).

Figure 1
Diagram showing the process of creating a patient-derived tumor organoid for head and neck cancer. Panel A: Illustration of head and neck tumor types (SCC, ACC, DC, MEC). Panel B: Tumor is cut into fragments smaller than 0.3 cm. Panel C: Fragments placed on an air-liquid interface platform and treated with Anti-PD-1. Panel D: Depiction of tumor immune microenvironment, including tumor cells, T cells, and cancer-associated fibroblasts (CAFs).

Figure 1. (A) Fresh human head and neck cancer tissues were surgically obtained. (B) Tumor tissues were physically minced using a non-enzymatic method. (C) Head and neck cancer organoids were cultured in an air-liquid interface dual-dish system. (D) The resulting model retained not only tumor cells but also lymphocytes and fibroblasts from the original tumor microenvironment.

The culture medium contained 1× Glutamax additive, 10 mmol/L HEPES, 1 mmol/L N-acetylcysteine, 10 mmol/L nicotinamide, 1× Pen-Strep glutamine, 1× B27, 10 μmol/L SB202190 (a p38MAPK inhibitor), 0.5 μmol/L A8301, 0.05–0.25 μg/mL R-spondin1 recombinant protein, 0.05–0.2 μg/mL recombinant human noggin protein, 50 ng/mL EGF, 10 nmol/L gastrin, 0.05–0.2 μg/mL human Wnt-3A, and 500 IU/mL IL-2 in Advanced DMEM/F12 basic culture medium.

2.4 Histological analysis

The mature ALI-HNCO was collected and fixed with 4% paraformaldehyde at 4°C for 30 min. The HNCO precipitate was blown to even distribution, followed by pre-embedding with liquid agarose, cooling to a gel-like state, and then subjected to gradient dehydration, transparency, paraffin-embedding, sectioning, and hematoxylin and eosin (H&E) staining and immunohistochemical (IHC) staining. After sealing, it was analyzed and compared with the corresponding original tumor tissue sections.

2.5 Immunofluorescence analysis

After the paraffin sections prepared in Section 2.4 were deparaffinized, antigen-retrieved, and subjected to three rounds of antibody staining. Each round included serum blocking, primary antibody incubation at 4°C overnight, HRP-labeled secondary antibody, and TSA-based fluorescent tyramide covalent labeling. The primary antibodies included CK5 (Servicebio, GB111246; 1:10000) for SCC, CK7 (Servicebio, GB12225; 1:2000) for MEC and DC, CD3 (Servicebio, GB12014; 1:2,000), and α-SMA (Servicebio, GB15044; 1:10000). The nuclei were counterstained with DAPI, and the sections were treated to quench autofluorescence, followed by sealing. Finally, the sections were sealed, and images were collected. This TSA-based method enables triple-labeling for protein co-localization analysis.

2.6 Addition of the immune checkpoint inhibitor pembrolizumab to activate T cells

PD-1 is a member of the B7/CD28 costimulatory receptor family and can be expressed on the surface of activated CD8+ T cells and B cells. It primarily regulates CD8+ T cell activity through binding to its ligands, PD-L1 and PD-L2, transmembrane proteins on tumor cells. Pembrolizumab has a high affinity for PD-1 on the surface of T cells and acts by blocking PD-1/PD-L1 cell channels, thereby facilitating cancer cell killing by the immune system. Since pembrolizumab is currently the first-line immunotherapy for HNC, the agent was chosen to explore the feasibility of using ALI-PDO models to evaluate the efficacy of immunotherapeutic drugs. IgG 4 (10 μg/mL) was the control group, and pembrolizumab (10 μg/mL) was the experimental group. We administered two consecutive doses of medication (changed every 3 days) to the cultured ALI organoids and cultured them for 7 days.

2.7 Secreted cytokine analysis by ELISA

The release of IFN-γ during T-lymphocyte activation was measured using the Human IFN-γ ELISA Kit. Cells treated with pembrolizumab and ICI were designated the experimental group, and IgG4 was designated the control group. The concentration of IFN-γ in culture medium was determined after 7 days. The average IFN-γ concentration was calculated by comparing the OD450 value of the sample measured on the microplate reader to the standard curve.

2.8 The activation of T cells and the killing of tumors detected by flow cytometry

The inner matrix gel was collected in a 15 mL centrifuge tube using precision tweezers, digested with 300 U/mL collagenase IV at 37°C for 30 min, followed by washing. The cell clusters were resuspended in 2 mL of Liberase TL (25 U/mL) and digested at 37°C for 15 min to prepare single cells. The single cells were washed once with MRS (5 mM EDTA/PBS) and FACS solution (PBS containing 2% FBS), respectively. Then, the cells were filtered, and the cell pellet obtained by centrifugation was resuspended in an appropriate amount of FACS solution. The sample was prepared by adding the following antibodies: Fixable Viability Stain 780, anti-CD45-percp-cy5.5, CD3-PE-Cy7, anti-CD4-PE, anti-CD8-APC, and anti-CD69-APC-R700. After staining, it was incubated on ice in the dark for 30 to 45 min. The sample was washed with 1 mL of FACS solution and resuspended in an appropriate amount of FACS solution or organoid growth medium (usually 100–500 μL). A total of 100,000 cells were collected using the LSRF Fortessa and analyzed using FlowJo software (version 10.8.1, Treestar).

2.9 Data analysis

Statistical analyses were carried out with GraphPad Prism, employing an independent samples t-test for two-group comparisons and one-way ANOVA for multi-group comparisons. Results are presented as follows: ns (not significant) for P > 0.05, *P < 0.05, **P < 0.01, ***P < 0.001, and ****P < 0.0001.

3 Results

3.1 Establishment and morphological validation of the immune microenvironment model for HNC

We established 28 HNCO models (28/35, with a success rate of 80%) using patient-derived HNC resection specimens. Table 2 summarizes the detailed clinical and pathological data of the patients corresponding to HNCO. We successfully established an immune microenvironment model for HNC (Figure 1). Among the 35 cultured cases, 28 grew successfully, for an overall success rate of 80%. Within about 2 weeks of culture, the growth of organoids was recorded by bright-field photography using an inverted microscope (Figure 2A).

Table 2
www.frontiersin.org

Table 2. Patient clinicopathological data of the 35 HNCO models.

Figure 2
A multi-panel scientific figure depicting organoid development and histological analysis at different time points and conditions. Panel A shows brightfield images of HNCO25 organoids at days zero, three, seven, and fourteen. Panel B compares brightfield and hematoxylin and eosin (H&E) stained images of ALI-PDTOs and corresponding tissue for ductal carcinoma (DC), squamous cell carcinoma (SCC), and mucoepidermoid carcinoma (MEC). Panel C illustrates immunohistochemical staining for different markers, such as CK19, EMA, P63, and Ki67 in ALI-PDTOs and tissue samples for various carcinoma types.

Figure 2. (A) Bright-field images of organoids taken under an inverted microscope on day 0, 3, 7, and 14. (B) Comparison of HNCO16 SCC/HNCO9 DC/HNCO23 MEC organoids on day 14, including inverted microscope images (200 μm), H&E staining images (100 μm, 50μm), and H&E staining images of their corresponding tumor tissues (50μm). (C) Immunohistochemical analysis images (100 μm) of HNCO16 SCC/HNCO9 DC/HNCO23 MEC organoids and their corresponding tumor tissues.

H&E staining and IHC assays were employed to analyze and compare the morphological and histological characteristics of HNCO and the corresponding tumor specimens. The nuclear atypia exhibited by HNCO was highly similar to that of homologous parent tumor tissues. CK5, EGFR, P63, and Ki67 staining of the SCC organoids was positive, which was consistent with those of the parents. CK9, EMA, P63, and Ki67 staining of the DC organoids were all positive, which was consistent with those of the parents. Among them, the staining results of CK7, E-cad, and P63 in one MEC organoid HNCO23 were consistent with those of its parental tissue/cells and showed positive signals, while Ki67 was consistent with the parents and showed negative results. That is, the results of typical IHC organoid markers were consistent with those of the parents, which can prove their homology at the histopathological level. The results also demonstrated the successful construction of HNCOs (Figures 2B, C).

3.2 The immune microenvironment model for HNC preserves the components and structure of the TME

Immune cells, fibroblasts, and other non-tumor cells in the TME have a significant impact on tumor occurrence and development. Unlike the previous stromal cell scaffold method, the ALI-HNCO culture can maintain other components of the TME for a period of time. For this purpose, we performed immunofluorescence staining of parental tumor tissues and ALI-HNCOs cultured for 14 days to analyze the T-cell immune marker CD3 and the fibroblast immune marker SMA. The results showed that CD3+ cells and α-SMA+ cells could be preserved in ALI-HNCOs, confirming that the ALI-HNCO model can preserve T cells and fibroblasts in the TME (Figures 3A–C).

Figure 3
Fluorescently labeled tissue images of HNC09, HNC016, and HNC020 analyzed in panels A, B, and C. Each panel shows two sample types: Tissue and ALI-PDTO, visualized with markers CK7 or CK5 (red), CD3 (green), SMA (yellow), and merged images showing overlapping staining patterns. Each row highlights different cellular structures within the samples, with variations in marker expression and distribution.

Figure 3. ALI-PDTOs were cultured until day 14 and subjected to immunofluorescence staining to verify their ability to retain the tumor microenvironment of the original tumor. (A) HNCO9 DC tumor tissue and its corresponding organoids: CK7 (red), CD3 (green), SMA (yellow), and nuclear DAPI staining (blue); (B) HNCO16 SCC tumor tissue and its corresponding organoids: CK5 (red), CD3 (green), SMA (yellow), and nuclear DAPI staining (blue); (C) HNCO23 MEC tumor tissue and its corresponding organoids: CK7 (red), CD3 (green), SMA (yellow), and nuclear DAPI staining (blue).

3.3 The HNC immune microenvironment model replicates immune checkpoint responses in the microenvironment

CTLs release effector cytokines, such as IFN-γ, which participate in the initiation and differentiation of CTLs and directly kill tumor cells (27). During tumor progression, T cells enter a state of exhaustion. The characteristics of exhausted T cells include the continuous high expression of multiple inhibitory receptors (e.g., PD-1) and the inability to secrete IFN-γ (28). Pembrolizumab effectively blocks the “brakes,” such as immune checkpoints (PD-1/PD-L1), enabling T cells to regain the ability to secrete IFN-γ. After 14 days of culture, the experimental group was treated with pembrolizumab, and the control group was treated with IgG4. Pembrolizumab mainly activated cytotoxic T cells (CD8+ T cells), while IFN-γ was mainly secreted by activated CD8+ CTLs. Therefore, we validated T-cell activation by measuring IFN-γ concentrations in the culture medium using ELISA. The ELISA results showed that IFN-γ concentrations in the six ALI-PDTO experimental groups increased significantly, revealing a remarkable difference compared with the control groups (Figure 4).

Figure 4
Bar chart comparing IFN-gamma concentrations in twenty-eight samples labeled HNC01 to HNC28. Pembrolizumab (pink) consistently shows higher concentrations than IgG4 (blue), with significant differences marked by asterisks.

Figure 4. ALI-PDTOs recapitulated the response to immune checkpoint blockade therapy. After a 7-day treatment with Pembrolizumab in the experimental group and IgG4 in the control group, the concentration of IFN-γ in the culture medium was measured by ELISA. The results showed that the IFN-γ concentration in the experimental groups of HNCO2, HNCO5, HNCO9, HNCO17, HNCO21, and HNCO23 was significantly higher than that in the control groups, ****P<0.0001.

Pembrolizumab can rescue exhausted T cells. Due to the release of inhibition, antigen-specific CD8+ T cells undergo clonal proliferation, resulting in a significant increase in cell numbers. In contrast, the total number of CD4+ T cells remained relatively stable. Thus, the ratio of CD8+ to CD4+ naturally increased. An increase in the proportion of CD8+/CD4+ T cells was observed in five ALI-PDTO groups treated with pembrolizumab compared with the control group treated with IgG4, indicating that ICB rescued exhausted CD8+ T cells and reversed the immune depletion state of the TME. The IFN-γ concentrations in these five ALI-PDTO experimental groups increased significantly. However, in the remaining 23 groups, no significant change in the CD8+/CD4+ T-cell ratio was seen between the pembrolizumab-treated group and the IgG4-treated group, indicating the failure of CD8+ T-cell expansion after anti-PD-1 treatment (Figure 5A).

Figure 5
Panel A shows flow cytometry dot plots and bar graphs of CD3+ T cells and CD4+ T cells treated with aPD-1 or IgG4 in various samples (HNCO9, HNCO17, HNCO16, HNCO22). Panel B presents contour plots illustrating the CD8+, CD69+ subset activation in the same samples with aPD-1 or IgG4 treatments. Panel C displays overlaid histograms comparing cell viability (FVS) between treatments in each sample.

Figure 5. ALI-PDTOs recapitulated the response to immune checkpoint blockade therapy. After a 7-day treatment with Pembrolizumab in the experimental group and IgG4 in the control group, flow cytometry was performed to measure: (A) The ratio of tumor-infiltrating CD8+ T cell subsets to CD4+ T cell subsets in the experimental versus control groups; (B) The percentage of CD8+, CD69+ cell subsets within T cells in the experimental versus control groups; (C) A comparative histogram of tumor cells stained with FVS in the experimental versus control groups.

CD69 is an early marker of T-cell activation. Therefore, the expression of CD69 is a key signal for the successful activation of T cells and their transition from a quiescent state to a functional state (29, 30). Analysis revealed that in the five ALI-PDTO groups with elevated CD8+ T cells, the proportion of cytotoxic CD8+ and CD69+ cell populations among all T cells was significantly increased in the pembrolizumab-treated group compared with the IgG4-treated control group. In other organoid groups, no significant difference was seen in the proportion of CD69+ cells between the experimental and control groups (Figure 5B).

FVS staining of the cells after organoid digestion indicated that the organoid group, with a significantly increased proportion of cytotoxic CD69+ T cells, showed increased numbers of dead tumor cells, demonstrating anti-PD-1-dependent tumor killing activity (Figure 5C). This indicated that T cells were activated to exert a killing effect on tumor cells.

In conclusion, our results demonstrated the heterogeneity of responses to ICB. Among the 28 groups of organoids, five responded to pembrolizumab, while the remaining 23 were resistant to it. The OOR to the immunotherapy drugs was 17.86% (5/28), which was consistent with existing studies on OORs in HNCs, including squamous cell carcinoma and salivary gland cancer.

4 Discussion

We successfully established 28 ALI-HNCO models, which preserved the pathological features and genetic alterations of the original tumor. The ALI method has a higher utilization rate of tumor tissues than the traditional matrix gel-embedded culture method and does not require collagenase or trypsin to digest the tissue into individual cells, like traditional methods (31). The non-enzymatic digestion method of mechanical shearing was employed to treat tissue blocks. This approach is highly suitable for high-fibrosis tumors and tumors with tight intercellular connections, such as HNC. Since intense enzymatic digestion and dissociation processes were avoided, the ALI method better preserves the original tumor tissue structure and the diverse cell types, reducing the risk of clonal selection in the early stage of culture, and enabling the cultivated model to truly reflect the genetic and phenotypic heterogeneity of the primary tumor. In the ALI dual-disc system, the immune cells and the fibroblast matrix of tumor tissues could be maintained for a certain period of time, forming a complex ecological environment closer to the in vivo environment. This method provides a holistic strategy for in vitro immune TME modeling that can explore complex crosstalk among multiple cell populations, such as the impact of tumor-associated fibroblasts on tumor cell development.

Immunotherapy has been widely recognized as a new and effective approach for treating various cancers. Currently, ICIs (such as PD-1/PD-L1 inhibitors) are the main treatment for HNC, among which the anti-PD-1 ICI pembrolizumab is the first-line treatment. However, overall OOR of pembrolizumab as a single treatment is relatively low. Organoid models that can be used for preclinical research have been rapidly developed. They can be applied in screening chemotherapy and the usage of targeted drugs. However, most models cannot maintain the TME, so they cannot be used to screen immunotherapeutic drugs. HNC tumors are known to have significant individual differences, and T-cell-mediated tumor killing is influenced by multiple factors. Hence, the treatment of advanced HNC patients requires more personalized precision medicine. In this study, the ALI method was employed to study and establish organoids capable of maintaining the immune microenvironment and successfully preserving T lymphocytes, which is the most prominent advantage of the ALI culture method. We used pembrolizumab to treat organoids, and the organoids demonstrated different responses to immunotherapy. Twenty-eight organoid models responded to immunotherapy drugs (17.86%), which was similar to that reported in previous studies on OOR for HNCs, including squamous cell carcinoma and salivary gland carcinoma. The model has the potential to become an in vitro model for personalized precision medicine in tumor immunotherapy and combination therapy.

However, the ALI culture steps are more complicated than traditional methods. The ALI method requires the manual handling of tissue fragments and precise spreading on membranes; that is, the operators need higher technical skills. Thus, the technique is not easy to standardize. Traditional organoids can be cultured in 96- or 384-well plates, which are highly suitable for large-scale drug screening. ALI cultures usually employ insertable petri dishes, and each well needs to be treated separately, which limits throughput and increases cost. To address this challenge, future efforts should pursue innovation in the miniaturization of ALI-based tumor organoid platforms. This includes developing specialized microfluidic chips or miniaturized culture plates (e.g., hanging drop arrays) to enhance both throughput and compatibility. In addition, the typical expansion mode of ALI organoids is mainly the outward growth and proliferation of the original tissue blocks, rather than forming individual, passageable and expandable organoid spheres. Therefore, the amplification speed is relatively slow, making it difficult to obtain a large number of cells in a short period of time, which is challenging for experiments that require many cells, such as genomic sequencing. The tissue block grows on a porous membrane, and its 3D structure is less regular than organoid spheres in the matrix gel scaffold method, which poses certain difficulties for real-time imaging, size measurement, and automated analysis.

In this study, the application of ALI-HNCOs in cancer immunotherapy in vitro demonstrated that patient-derived HNC ALI-PDOs could simulate PD-1/PD-L1 checkpoint blockade. Moreover, treatment with the anti-PD-1 antibody pembrolizumab activated and proliferated TILs in the ALI-PDO model and triggered cytotoxic reactions, indicating its great potential and prospects for immunotherapeutic methods in the field of precision medicine. Our subsequent research will focus on and be devoted to the clinical validation and clinical translation of ALI culture models, and we also confirmed its utility as a screening platform for both chemotherapy and radiotherapy, comparable to traditional organoids, which facilitates the selection of optimized combination therapies. Since the cell preparation does not meet the level required by Good Clinical Practice (GCP) for clinical drug trials, experimental validation is needed in future research.

Data availability statement

The original contributions presented in the study are included in the article/supplementary material. Further inquiries can be directed to the corresponding author/s.

Ethics statement

The studies involving humans were approved by Approval Letter from the Biomedical Research Ethics Review Committee of Xuzhou Central Hospital. The studies were conducted in accordance with the local legislation and institutional requirements. The participants provided their written informed consent to participate in this study.

Author contributions

LZ: Methodology, Writing – original draft, Writing – review & editing, Supervision, Investigation, Formal Analysis. WT: Validation, Visualization, Formal Analysis, Writing – review & editing. SG: Writing – original draft, Formal Analysis, Methodology, Investigation. LC: Conceptualization, Writing – original draft, Investigation. SW: Supervision, Writing – review & editing. FL: Formal Analysis, Methodology, Writing – review & editing. JM: Supervision, Writing – review & editing, Conceptualization, Funding acquisition.

Funding

The author(s) declared that financial support was received for this work and/or its publication. The author(s) declared that financial support was received for this work and/or its publication. This study was supported by grants from the Geriatric Health Research Project of Jiangsu Provincial Health Commission (Grant No. LKM2024031), Xuzhou City “Health Peak” Team Training Project: Oral and Maxillofacial- Head and Neck Oncology Comprehensive Sequential Treatment Oral Surgery Team (Grant No. 2025DF08), Xuzhou Municipal Science and Technology Bureau: Application Research on Personalized Precision Therapy for Locally Advanced Oral Squamous Cell Carcinoma Based on Organoids (Grant No. KC25054).

Conflict of interest

The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.

Generative AI statement

The author(s) declared that generative AI was not used in the creation of this manuscript.

Any alternative text (alt text) provided alongside figures in this article has been generated by Frontiers with the support of artificial intelligence and reasonable efforts have been made to ensure accuracy, including review by the authors wherever possible. If you identify any issues, please contact us.

Publisher’s note

All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.

References

1. Johnson DE, Burtness B, Leemans CR, Lui VWY, Bauman JE, and Grandis JR. Head and neck squamous cell carcinoma. Nat Rev Dis Primers. (2020) 6:92. doi: 10.1038/s41572-020-00224-3

PubMed Abstract | Crossref Full Text | Google Scholar

2. Bray F, Laversanne M, Sung H, Ferlay J, Siegel RL, Soerjomataram I, et al. Global cancer statistics 2022: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries. CA Cancer J Clin. (2024) 74:229–63. doi: 10.3322/caac.21834

PubMed Abstract | Crossref Full Text | Google Scholar

3. Pfister DG, Spencer S, Adelstein D, Adkins D, Anzai Y, Brizel DM, et al. Head and neck cancers, version 2.2020, NCCN clinical practice guidelines in oncology. J Natl Compr Canc Netw. (2020) 18:873–98. doi: 10.6004/jnccn.2020.0031

PubMed Abstract | Crossref Full Text | Google Scholar

4. Burtness B, Harrington KJ, Greil R, Soulières D, Tahara M, De Castro G, et al. Pembrolizumab alone or with chemotherapy versus cetuximab with chemotherapy for recurrent or metastatic squamous cell carcinoma of the head and neck (KEYNOTE-048): a randomised, open-label, phase 3 study. Lancet. (2019) 394:1915–28. doi: 10.1016/S0140-6736(19)32591-7

PubMed Abstract | Crossref Full Text | Google Scholar

5. Korczaguin GG, Teixeira GV, and Shaha A. Postoperative adjuvant chemoradiotherapy versus postoperative adjuvant radiotherapy for head and neck squamous cell carcinoma with adverse pathology: a systematic review and meta-analysis. Braz J Otorhinolaryngol. (2024) 91:101516. doi: 10.1016/j.bjorl.2024.101516

PubMed Abstract | Crossref Full Text | Google Scholar

6. Palucka AK and Coussens LM. The basis of oncoImmunology. Cell. (2016) 164:1233–47. doi: 10.1016/j.cell.2016.01.049

PubMed Abstract | Crossref Full Text | Google Scholar

7. Anderson NM and Simon MC. Tumor microenvironment. Curr Biol. (2020) 30:R921–5. doi: 10.1016/j.cub.2020.06.081

PubMed Abstract | Crossref Full Text | Google Scholar

8. Hanahan D and Weinberg RA. Hallmarks of cancer: the next generation. Cell. (2011) 144:646–74. doi: 10.1016/j.cell.2011.02.013

PubMed Abstract | Crossref Full Text | Google Scholar

9. Pardoll DM. The blockade of immune checkpoints in cancer immunotherapy. Nat Rev Cancer. (2012) 12:252–64. doi: 10.1038/nrc3239

PubMed Abstract | Crossref Full Text | Google Scholar

10. Rosenberg SA and Restifo NP. Adoptive cell transfer as personalized immunotherapy for human cancer. Science. (2015) 348:62–8. doi: 10.1126/science.aaa4967

PubMed Abstract | Crossref Full Text | Google Scholar

11. Xing A, Lv D, Wu C, Zhou K, Zhao T, Zhao L, et al. Tertiary lymphoid structures gene signature predicts prognosis and immune infiltration analysis in head and neck squamous cell carcinoma. Curr Genomics. (2024) 25:88–104. doi: 10.2174/0113892029278082240118053857

PubMed Abstract | Crossref Full Text | Google Scholar

12. Topalian SL, Forde PM, Emens LA, Yarchoan M, Smith KN, and Pardoll DM. Neoadjuvant immune checkpoint blockade: A window of opportunity to advance cancer immunotherapy. Cancer Cell. (2023) 41:1551–66. doi: 10.1016/j.ccell.2023.07.011

PubMed Abstract | Crossref Full Text | Google Scholar

13. Even C, Delord J-P, Price KA, Nakagawa K, Oh D-Y, Burge M, et al. Evaluation of pembrolizumab monotherapy in patients with previously treated advanced salivary gland carcinoma in the phase 2 KEYNOTE-158 study. Eur J Cancer. (2022) 171:259–68. doi: 10.1016/j.ejca.2022.05.007

PubMed Abstract | Crossref Full Text | Google Scholar

14. Drost J and Clevers H. Organoids in cancer research. Nat Rev Cancer. (2018) 18:407–18. doi: 10.1038/s41568-018-0007-6

PubMed Abstract | Crossref Full Text | Google Scholar

15. Neal JT, Li X, Zhu J, Giangarra V, Grzeskowiak CL, Ju J, et al. Organoid modeling of the tumor immune microenvironment. Cell. (2018) 175:1972–1988.e16. doi: 10.1016/j.cell.2018.11.021

PubMed Abstract | Crossref Full Text | Google Scholar

16. Esch EW, Bahinski A, and Huh D. Organs-on-chips at the frontiers of drug discovery. Nat Rev Drug Discov. (2015) 14:248–60. doi: 10.1038/nrd4539

PubMed Abstract | Crossref Full Text | Google Scholar

17. Clevers H. Modeling development and disease with organoids. Cell. (2016) 165:1586–97. doi: 10.1016/j.cell.2016.05.082

PubMed Abstract | Crossref Full Text | Google Scholar

18. Chen D, Xu L, Xuan M, Chu Q, and Xue C. Unveiling the functional roles of patient-derived tumour organoids in assessing the tumour microenvironment and immunotherapy. Clin Transl Med. (2024) 14:e1802. doi: 10.1002/ctm2.1802

PubMed Abstract | Crossref Full Text | Google Scholar

19. Vinci M, Gowan S, Boxall F, Patterson L, Zimmermann M, Court W, et al. Advances in establishment and analysis of three-dimensional tumor spheroid-based functional assays for target validation and drug evaluation. BMC Biol. (2012) 10:29. doi: 10.1186/1741-7007-10-29

PubMed Abstract | Crossref Full Text | Google Scholar

20. Ravi M, Paramesh V, Kaviya SR, Anuradha E, and Solomon FDP. 3D cell culture systems: advantages and applications. J Cell Physiol. (2015) 230:16–26. doi: 10.1002/jcp.24683

PubMed Abstract | Crossref Full Text | Google Scholar

21. Verjans E-T, Doijen J, Luyten W, Landuyt B, and Schoofs L. Three-dimensional cell culture models for anticancer drug screening: Worth the effort? J Cell Physiol. (2018) 233:2993–3003. doi: 10.1002/jcp.26052

PubMed Abstract | Crossref Full Text | Google Scholar

22. Tiriac H, Belleau P, Engle DD, Plenker D, Deschênes A, Somerville TDD, et al. Organoid profiling identifies common responders to chemotherapy in pancreatic cancer. Cancer Discov. (2018) 8:1112–29. doi: 10.1158/2159-8290.CD-18-0349

PubMed Abstract | Crossref Full Text | Google Scholar

23. Della Corte CM, Barra G, Ciaramella V, Di Liello R, Vicidomini G, Zappavigna S, et al. Antitumor activity of dual blockade of PD-L1 and MEK in NSCLC patients derived three-dimensional spheroid cultures. J Exp Clin Cancer Res. (2019) 38:253. doi: 10.1186/s13046-019-1257-1

PubMed Abstract | Crossref Full Text | Google Scholar

24. Jacob F, Salinas RD, Zhang DY, Nguyen PTT, Schnoll JG, Wong SZH, et al. A patient-derived glioblastoma organoid model and biobank recapitulates inter- and intra-tumoral heterogeneity. Cell. (2020) 180:188–204.e22. doi: 10.1016/j.cell.2019.11.036

PubMed Abstract | Crossref Full Text | Google Scholar

25. Finnberg NK, Gokare P, Lev A, Grivennikov SI, MacFarlane AW, Campbell KS, et al. Application of 3D tumoroid systems to define immune and cytotoxic therapeutic responses based on tumoroid and tissue slice culture molecular signatures. Oncotarget. (2017) 8:66747–57. doi: 10.18632/oncotarget.19965

PubMed Abstract | Crossref Full Text | Google Scholar

26. Huang Y, Lan Y, Zhang Z, Xiao X, and Huang T. An update on the immunotherapy for oropharyngeal squamous cell carcinoma. Front Oncol. (2022) 12:800315. doi: 10.3389/fonc.2022.800315

PubMed Abstract | Crossref Full Text | Google Scholar

27. Pachulec E, Neitzke-Montinelli V, and Viola JPB. NFAT2 regulates generation of innate-like CD8+ T lymphocytes and CD8+ T lymphocytes responses. Front Immunol. (2016) 7:411. doi: 10.3389/fimmu.2016.00411

PubMed Abstract | Crossref Full Text | Google Scholar

28. Li Y, Wu D, Yang X, and Zhou S. Immunotherapeutic potential of T memory stem cells. Front Oncol. (2021) 11:723888. doi: 10.3389/fonc.2021.723888

PubMed Abstract | Crossref Full Text | Google Scholar

29. Smith-Garvin JE, Koretzky GA, and Jordan MS. T cell activation. Annu Rev Immunol. (2009) 27:591–619. doi: 10.1146/annurev.immunol.021908.132706

PubMed Abstract | Crossref Full Text | Google Scholar

30. Wöbke TK, von Knethen A, Steinhilber D, and Sorg BL. CD69 is a TGF-β/1α,25-dihydroxyvitamin D3 target gene in monocytes. PloS One. (2013) 8:e64635. doi: 10.1371/journal.pone.0064635

PubMed Abstract | Crossref Full Text | Google Scholar

31. Qu S, Xu R, Yi G, Li Z, Zhang H, Qi S, et al. Patient-derived organoids in human cancer: a platform for fundamental research and precision medicine. Mol BioMed. (2024) 5:6. doi: 10.1186/s43556-023-00165-9

PubMed Abstract | Crossref Full Text | Google Scholar

Keywords: air-liquid interface culture method, head and neck cancer, immune checkpoint inhibitors, immune microenvironment, organoids

Citation: Zheng L, Tang W, Guo S, Chen L, Wang S, Liu F and Meng J (2026) Reconstituting the head and neck tumor microenvironment with air-liquid interface organoids. Front. Oncol. 15:1736505. doi: 10.3389/fonc.2025.1736505

Received: 04 November 2025; Accepted: 08 December 2025; Revised: 01 December 2025;
Published: 02 January 2026.

Edited by:

Takumi Kumai, Asahikawa Medical University, Japan

Reviewed by:

Mauricio Gonçalves Da Costa Sousa, Oregon Health and Science University, United States
Chen Xue, The First Affiliated Hospital of Zhengzhou University, China

Copyright © 2026 Zheng, Tang, Guo, Chen, Wang, Liu and Meng. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

*Correspondence: Jian Meng, bXJvY2tldEAxMjYuY29t

These authors have contributed equally to this work and share first authorship

Disclaimer: All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article or claim that may be made by its manufacturer is not guaranteed or endorsed by the publisher.