Abstract
Dipeptidyl peptidase 8 (DPP8) and 9 (DPP9) are widely expressed in mammals including humans, mainly locate in the cytoplasm. The DPP8 and DPP9 (DPP8/9) belong to serine proteolytic enzymes, they can recognize and cleave N-terminal dipeptides of specific substrates if proline is at the penultimate position. Because the localization of DPP8/9 is different from that of DPP4 and the substrates for DPP8/9 are not yet completely clear, their physiological and pathological roles are still being further explored. In this article, we will review the recent research advances focusing on the expression, regulation, and functions of DPP8/9 in physiology and pathology status. Emerging research results have shown that DPP8/9 is involved in various biological processes such as cell behavior, energy metabolism, and immune regulation, which plays an essential role in maintaining normal development and physiological functions of the body. DPP8/9 is also involved in pathological processes such as tumorigenesis, inflammation, and organ fibrosis. In recent years, related research on immune cell pyroptosis has made DPP8/9 a new potential target for the treatment of hematological diseases. In addition, DPP8/9 inhibitors also have great potential in the treatment of tumors and chronic kidney disease.
1 Introduction
Dipeptidyl peptidases (DPPs) belong to the S9b serine protease family with a conserved catalytic triad of serine, aspartate, and histidine (), which can cleave the N-terminal dipeptide of their substrate if proline is at the penultimate position. The key members of the DPP family include DPP4, DPP8, DPP9, and FAP. DPP4 predominantly exists in soluble and membrane-bound forms in the body. Since DPP4 inhibition can protect incretin hormones from degradation, DPP4 inhibitors have been widely used in the treatment of type 2 diabetes (), and studies have also found that DPP4 plays important roles in cell death regulation, immunity, metabolic regulation, tumorigenesis, and other processes (; ). The research on FAP mainly focuses on cancer (). In recent years, DPP8 and DPP9 have attracted increasingly extensive attention since DPP8/9 inhibitors have been found to induce immune cell pyroptosis (). DPP8 and DPP9 have very high similarities in both sequence and structure. They are widely expressed in animals with major localization in the cytoplasm and nucleus, and sometimes in the plasma membrane. However, their functions remain to be determined. DPP8/9 may play a role through its cleavage of substrates. Many of the DPP8/9 substrates currently have been shown to be related to immunity and energy metabolism, such as some cytokines and adenylate kinase 2 (AK2) (; ; ). DPP8/9 can also function by interacting with proteins such as nucleotide-binding domain and leucine-rich repeat pyrin-domain containing protein 1 (NLRP1) (; ) and caspase activation and caspase recruitment domain-containing protein 8 (CARD8) (). Burgeoning evidence have shown that DPP8/9 plays essential roles in various biological processes and diseases, such as tumor development, immune regulation, inflammatory response, energy metabolism, cell proliferation and apoptosis, and cell adhesion and migration. Recent research findings from us have shown that DPP8/9 exerts an important role in renal tubulointerstitial fibrosis in vivo and in vitro, which could be markedly mitigated by DPP8/9 inhibitors ().
In this review, we summarize the molecular characteristics, distribution, functions, and implications of DPP8/9 on relevant diseases. We highlight the new insights of DPP8/9 in pyroptosis, cancer, and organ fibrosis, as well as the research progress of selective DPP8/9 inhibitors. This review aims to gain a deeper understanding of DPP8/9 and possible application of their inhibitors for relevant diseases treatment.
2 The distribution and substrates of DPP8/9
2.1 Molecular expression, distribution, and cellular localization
The DPPs family is mainly constituted of DPP4, DPP8, DPP9, and FAP. DPP8 and DPP9 are ubiquitously expressed in mammals including humans and are expressed in the immune system, epithelium, endothelium, nervous system, reproductive organs, and various other cells (; ; ; ; ; ; ; ; ; ). DPP9 is the only DPPs family enzyme detectable in human carotid endothelial cells (). Some studies have also found that DPP9 is localized to the bronchi (; ) and skin (; ; ). In addition, DPP8/9 was found to be localized in spermatozoa in bovine and rat testis (), and a natural short form of DPP9 was purified from bovine testis ().
The genes of DPP8 and DPP9 are located on human chromosomes 15q22 and 19p13, respectively. Through cloning, sequencing, and silico identification analysis of these two proteases, it was found that they have considerable sequence and structural homology with DPP4. DPP8/9 also exists in the form of dimers, containing β-propeller and α/β hydrolase domains, showing similar activity to that of DPP4, with the ability to cleave prolyl bonds (; ; ). However, the findings from the further crystal and molecular structure studies indicated that DPP8/9 and DPP4 have significant differences in the structure of the ligand-binding site (). At the same time, both DPP8 and DPP9 have very high sequence similarities to each other (77% amino acid similarity, 57% amino acid identity, and higher similarity within the active site) (). Notably, some studies have found that the cleavage sites, localization, and physiological and pathological processes of the two involved are not identical. For example, the dipeptide Val-Ala is a common cleavage site for DPP9, but DPP8 cannot recognize it ().
Unlike DPP4, DPP8 and DPP9 lack transmembrane regions and secretory signals and are mainly localized in the cytoplasm (; ) (Figure 1). However, some studies have revealed that DPP8 and DPP9 can exist on the surface of immune cells in the absence of DPP4 expression (; ). Soluble DPP8 and DPP9 have also been found in mouse serum (), suggesting that they could somehow be secreted outside the cell and function by their enzyme activity and/or by interactions with extracellular molecules. In addition, DPP9 in macrophage cells may be involved in antigen presentation and temporarily located on the plasma membrane surface (). In tumor cells and fibroblasts, DPP9 may participate in cell adhesion and migration and locates adjacent to the edge of the plasma membrane (; ). It has been found that there are two homologous translation products for DPP9, in which the long-form DPP9 has a long N-terminal sequence with nuclear localization signal and is preferentially located in the nucleus (), as such, the two homologous types of DPP9 could play different roles. In addition, some studies have also displayed that the distribution of different transcripts and expression products of DPP9 is also different in vivo. Among them, the 4.4 kb DPP9 gene transcript mRNA is dominant and ubiquitously expressed, while the 5 kb transcript mRNA is mainly present in skeletal muscle ().
FIGURE 1
2.2 Regulation of DPP8/9 activity
The activity of DPP8/9 is affected by small ubiquitin-like modifier (SUMO) modification and its redox (
2.3 Roles of DPP8/9 substrates
DPP8/9 exerts their biological functions by interacting with their specific substrates (Table 1), so identifying their substrates are very important to explore the potential roles of DPP8/9 in health and disease status. In the early stage, it was found that in vitro recombinant DPP8 and DPP9 can cleave some DPP4 substrates, such as glucagon-like peptide-1 (GLP1), glucagon-like peptide-2 (GLP2), neuropeptide Y (NPY), and peptide YY (PYY), with lower efficiency than DPP4. Since DPP8/9 is located intracellularly and these substrates are mainly located extracellularly, they may not be substrates for DPP8/9 to function in vivo (
TABLE 1
| Enzyme | Substrate | Role | References |
|---|---|---|---|
| DPP8 | IP10 (CXCL10) | Immunity | |
| ITAC (CXCL11) | Immunity | ||
| SDF-1 (CXCL12) | Immunity | ||
| DPP9 | RU134-42 peptide (VPYGSFKHV) | Immunity | |
| CO7A1 | Immunity | ||
| CXCL10 | Immunity | ||
| IL-1RA | |||
| MYO1A | Protein secretory process | ||
| NUCB1 | Immunity | ||
| S100-A10 | Immunity | ||
| SET | Immunity | ||
| AMRP1 | |||
| CSN8 | |||
| Syk | Immunity | ||
| BRCA2 | DNA repair | ||
| DPP8/9 | GLP-1 | Metabolism | |
| GLP-2 | Metabolism | ||
| NPY | Metabolism | ||
| PYY | Metabolism | ||
| Acetyl-CoA acetyltransferase, mitochondrial | Metabolism | ||
| Adenylate kinase 2 | Metabolism | ||
| Bifunctional purine biosynthesis protein PURH | Metabolism | ||
| Calreticulin | Immunity | ||
| Cathepsin Z/X | Proteolysis | ||
| Collagen-binding protein 2 (Serpin H-1) | Protein processing | ||
| C-1-tetrahydrofolate synthase, cytoplasmic | Metabolism | ||
| Dihydropyrimidine dehydrogenase [NADP+] | Metabolism | ||
| Endoplasmin | Immunity | ||
| Enoyl-CoA hydratase, mitochondrial | Metabolism | ||
| Heat shock 70 kDa protein 1L | Immunity | ||
| Mitochondrial import receptor subunit TOM34 | Protein transport | ||
| Obg-like ATPase 1 | Metabolism | ||
| serine/threonine-protein phosphatase 6 | Cell cycle |
Roles of DPP8/9 substrates.
Abbreviation: IP10, inflammatory protein-10; ITAC, interfering T-cell chemokines; SDF-1, chemokines stromal cell-derived factor; RU1, Renal Ubiquitous Protein 1; CO7A1, Collagen alpha-1 (VII) chain; CXCL10, C-X-C motif chemokine 10; IL-1RA, Interleukin-1 receptor antagonist protein; MYO1A, Unconventional myosin-Ia; NUCB1, Nucleobindin-1; S100-A10, Protein S100-A10; SET, phosphatase 2A inhibitor I2PP2A; AMRP1, Alpha-2macroglobulin receptorassociated protein; CSN8, COP9 signalosome complex subunit 8; BRCA2, breast cancer associated protein 2; GLP1, glucagon-like peptide-1; GLP2, glucagon-like peptide-2; NPY, neuropeptide Y; PYY, peptide YY.
Other natural substrates have also been proved to be the substrates of DPP8, such as inflammatory protein-10 (IP10, CXCL10), interfering T-cell chemokines (ITAC, CXCL11), and chemokines stromal cell-derived factor (SDF-1, CXCL12) (
Although the effect of DPP8/9 cleavage on the function of these substrates remains to be further investigated, their identification highlights the potential role of DPP8/9 in immune regulation and energy metabolism.
3 Biological activity and physiological functions of DPP8/9
3.1 DPP8/9 and the maintenance of normal development and physiological functions
Gall, M.G, Kim, M, et al. scholars constructed a mouse model of DPP9 enzyme inactivation. The gene knock-in (gki) mice resulted in the loss of enzymatic activity due to a serine to alanine point mutation (S729A) in the active site of the DPP9 enzyme. Increased apoptosis in occipital somite-derived migratory muscle progenitors in homozygous Dpp9ki/ki mice resulted in abnormal formation of intrinsic muscles at the distal tongue. Microglossia causes sucking defects in neonates that die within 24 h of birth. The neonates can survive manual feeding (
DPP8/9 is involved in cell adhesion and migration. Previous studies showed that DPP9 contains an Arg-Gly-Asp sequence that could bind to integrins (
DPP8/9 is also involved in cellular energy metabolism. As aforementioned, the expression of metabolism-related genes and the levels of metabolic-related products were altered in the liver and gut of mouse neonates with inactive DPP9 enzymatic activity, resulting in dysregulation of lipid metabolism and glucose metabolism. The Dpp9 knockdown in liver cancer cells mediated the energy catabolism pathways by increasing the activation of AMPK, a regulator of anabolism (
Additionally, DPP8/9 is also involved in cell proliferation and apoptosis. Studies have shown that the use of DPP8/9 inhibitors and DPP9 silencing can inhibit the proliferation of some cells, such as activated T cells (
3.2 DPP8/9 and immune regulation
Numerous studies have shown that DPP8/9 is involved in the regulation of the immune system. In humans and animals, DPP8 and DPP9 have been detected to be widely expressed in the immune system, such as lymphocytes (
In earlier studies on DPP4, nonselective inhibitors of DPP4 were found to inhibit DNA synthesis in natural killer (NK) cells and B lymphocytes (
In addition, DPP9 may also be involved in antigen presentation. The enzymatic activity of DPP9 was proved to be rate-limiting in the degradation of proline-containing antigenic peptides (
4 DPP8/9 and diseases
4.1 DPP8/9 and tumors
DPP8/9 has been confirmed to be expressed in a variety of different types of tumors, such as brain tumors, gynecological malignancies, liver cancer, and hematological malignant tumors. By searching the human protein atlas, DPP9 was tagged as a prognostic marker for multiple tumors (
It has been implicated that DPP8/9 is expressed in various brain tumors, such as gliomas and meningiomas (
Studies have shown that DPP8/9 plays a role in hematological tumors. Abnormal upregulation of DPP8/9 expression can be detected in B-cell chronic lymphocytic leukemia (CLL) (
In studies of Gynecologic malignancies, DPP8/9 was indicated to be ubiquitous in breast cancer, ovarian cancer, and HeLa cell lines (
Overexpressed DPP8/9 in patients with hepatocellular carcinoma (HCC) has been observed (
Besides, in non-small cell lung cancer (NSCLC), DPP9 was involved in epithelial-mesenchymal transition, and inhibition of DPP9 expression inhibited cell proliferation, migration, and invasion, and promotes apoptosis (
In summary, DPP8/9 is involved in the occurrence and development of various tumors and play different roles in different tumor types and tumor stages. Recent studies have further clarified this point of view. It has shown that the abnormal expression and enzymatic activity of DPP8/9 could participate in the occurrence and development of tumors by affecting cell proliferation and apoptosis, adhesion and migration, damaged DNA repair, and immune regulation. However, the underlying mechanisms and whether these tumors are possibly treated through regulating the enzyme activity and expression of DPP8/9 remain unclear, that need to be further explored.
4.2 DPP8/9 and inflammation
4.2.1 Inflammation
Previous studies have shown that DPP4 is involved in the induction of inflammatory responses (
The relationship between DPP4 and rheumatoid arthritis was investigated in rat models of arthritis induced by type II collagen or alkyldiamine, and the induction of arthritis could be inhibited by using DPP4 inhibitors (
In a rat asthma model induced by sensitization and challenge with ovalbumin, the gene level and enzymatic activity of DPP8/9 in lung tissue of wild-type and DPP4-knockout rats and the enzymatic activity of DPP8/9 in bronchial lavage fluid were upregulated. Therefore, DPP8 and DPP9 may be involved in the occurrence and development of chronic inflammatory responses in asthma (
The expression of DPPs was examined in atherosclerotic plaques and the presence of DPP8/9 was detected in the macrophage region. DPP9 expression was also elevated during monocyte-to-macrophage differentiation. The activation of M1-like macrophages was inhibited using the DPP8/9 inhibitor 1G244, and silencing DPP9 expression reduced the secretion of inflammatory factors such as TNFα and IL-6, indicating that DPP9 plays an important role in chronic inflammation (
4.2.2 DPP8/9 and pyroptosis
The inflammasome can exert pro-inflammatory effects to stimulate the immune system by activating caspase-1 to trigger a lytic form of programmed cell death known as pyroptosis. In recent years, DPP8/9 inhibitors have been discovered to induce this process.
Inflammasomes can be formed from the nucleotide-binding domain leucine-rich repeat (NLR) family of proteins. NLRP1 and the human-specific inflammatory regulator CARD8 are the only human proteins that contain an autoproteolytic domain named function-to-find (FIIND) domain. The FIIND domain consists of ZU5 and UPA subdomains. CARD8 is similar to the C-terminal region of NLRP1 and contains the FIIND domain and caspase activation and recruitment (CARD) domain. Nlrp1b is a homolog of NLRP1 and CARD8 (
FIGURE 2

The mechanism of DPP9 is involved in pyroptosis. (A) Schematic representation of the domains of human NLRP1, human CARD8, and mouse NLRP1b. In the FIIND domain, the ZU5 and UPA subdomains can directly undergo autoproteolysis to generate the active fragment of UPA-CARD (
The DPP family nonselective inhibitor Val-boroPro and the DPP8/9 selective inhibitor 1G244 were indicated to induce pyroptosis in mouse monocytes and macrophages (
Inhibition of DPP8/9 can also induce pyroptosis in human cells. DPP8/9 inhibitor induces pyroptosis through CARD8 activation of pro-caspase-1 demonstrated in human acute myeloid leukemia (AML) cell lines and primary AML samples (
In conclusion, recent studies have shown that DPP8/9 plays an essential role in maintaining the stability of NLRP1 and CARD8 and inhibiting pyroptosis. DPP8/9 inhibitors have the potential to treat hematological diseases, but their potential side effects, such as induction of resting lymphocytes pyroptosis, are still unclear. Their mechanism of function and possible clinical application needs to be further investigated.
4.3 DPP8/9 and organ fibrosis
In an animal model of early hepatic fibrosis induced by carbon tetrachloride (CCl4), intrahepatic DPP8/9 expression was increased. Conversely, the expression is downregulated in end-stage human chronic liver injury [such as advanced primary biliary cirrhosis (PBC) and end-stage alcoholic liver disease (ALD)] and the animal model of primary sclerosing cholangitis, the Mdr2 gko mouse (
Our previous study results revealed that DPP8/9 expression was increased in proximal tubular epithelial cells in patients with chronic kidney disease (CKD). It has been demonstrated that DPP8/9 can affect the transforming growth factor β1 (TGF-β1)/Smad signaling pathway using the CKD animal models induced by unilateral ureter obstruction and cell culture studies respectively. Administration of DPP8/9 inhibitor or DPP8/9 silencing could improve the occurrence and development of kidney inflammation and fibrosis, indicating that DPP8/9 may be a potential therapeutic target for tubulointerstitial fibrosis (
These research findings suggest that DPP8/9 may be a very important target for the treatment of organ fibrosis. However, there are few relevant experimental data and a lack of animal safety reports on the long-term DPP8/9 selective inhibitors application. Therefore, the more experimental evidence about the regulation of DPP8/9 expression and enzymatic activity for the treatment of organ fibrosis is needed.
4.4 DPP8/9 and COVID-19
Studies implicated the DPP9 gene was involved in Coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) (
5 Research progress of DPP8/9 inhibitors
DPP8/9 exerts biological functions by cleaving their substrates, so the development of selective inhibitors is of great significance to explore the mechanisms of action of DPP8/9 and their potential future use in the treatment of diseases. 1G244 and Allo-Ile-isoindoline are the most common highly selective inhibitors of DPP8/9, both of them are derivatives of isoindoline (
TABLE 2
| DPP8/9 inhibitors | IC50(nM) | Ki(nM) | References | ||
|---|---|---|---|---|---|
| DPP8 | DPP9 | DPP8 | DPP9 | ||
| Allo-Ile-isoindoline | 38 | 55 | |||
| 120 ± 10 | 290 ± 20 | ||||
| 145 | 242 | 13.7 | 33.7 | ||
| 1G244 | 14 | 53 | 0.9 | 4.2 | |
| 12 ± 1 | 84 ± 2 | ||||
| Methylpiperazine analogues of 1G244 (compound 12m) | 32 ± 2 | 260 ± 20 | |||
| Methylpiperazine analogues of 1G244 (compound 12n) | 50 ± 5 | 540 ± 40 | |||
| compound 2e (Irreversible inhibitor) | 520 ± 110 | ||||
| Analogue of allo-Ile-isoindoline (compound 8j) | 160 ± 16 | 70 ± 40 | |||
| Isoindoline-derived molecule (compound 5s) | 3,100 ± 100 | 490 ± 40 | |||
| Isoindoline-derived molecule (compound 5u) | 3,300 ± 500 | 500 ± 200 | |||
| SUMO1-EIL peptide (SLRFLYEG) | 147 ± 11.13 | 170 ± 11.28 | |||
Potency of selective DPP8/9 inhibitors.
6 Discussion
DPP8 and DPP9 belong to the serine protease family and are ubiquitously expressed in animals and humans. Although they are very similar in structure and sequence, their functions are not completely identical. Since the substrates and interaction partners of DPP8/9 are still unclear, and unlike the well-known localization of DPP4, they are mainly localized in cells, their biological functions require further studies to investigate. Previous studies have shown that DPP8 and DPP9 are multifunctional proteins that can function through enzymatic and non-enzymatic activities and participate in various physiological and pathological processes. In this review, we summarize the known functions of DPP8/9, which are involved in biological processes such as cell adhesion and migration, cell energy metabolism, cell proliferation and apoptosis, and immune regulation. And they play a role in pathological processes such as tumorigenesis, inflammation, and fibrosis. DPP8/9 is expected to be a potential therapeutic target for these relevant diseases.
Studies in recent years have further proved that DPP8/9 is involved in the occurrence and development of various tumors, and their potential mechanisms have been explored. For example, inhibition of DPP8 expression in cervical cancer cells can inhibit cell proliferation, migration, and invasion by affecting the expression of Bax and BCL2, inhibiting the expression of MMP2 and MMP9 (
The studies of DPP8/9 in the role of pyroptosis have made significant progress. The interaction of DPP9 with NLRP1 and CARD8 can inhibit their activation, thereby preventing the occurrence of pyroptosis (
A variety of mechanisms are involved in the pathogenesis of kidney diseases, such as immune abnormalities, energy metabolism abnormalities, podocyte cytoskeleton structure damage. DPP8/9 has been implied involved in these mechanisms. The evidence of altered expression of DPP8/9 in the kidneys of CKD patients has suggested that DPP8/9 may play an essential role in the development and progression of kidney diseases (
In conclusion, in this review we summarize the characteristics and functions of DPP8/9. The new research evidence of DPP8/9 have further supported that DPP8/9 are possible therapeutic targets for diseases such as tumors and inflammatory diseases. The advances have also revealed that DPP8/9 play a critical role in pyroptosis, organ fibrosis, COVID-19 infection, and so on. The regulation of DPP8/9 expression and enzymatic activity is expected to improve these pathogenic processes and diseases. The future studies based on the molecular structures of DPP8/9 and their roles in the physiological and pathophysiological processes will contribute to the further understanding of their properties, thereby facilitating the design of more specific small molecules or enzymatic inhibitors that compete with abnormal DPP8/9 expression or their enzymatic activity. Of note, the biological and pharmacological safety profiles of DPP8/9 inhibitors need further verification.
Statements
Author contributions
RF and CC designed this paper. LW, YW, and KW searched the literature. CC wrote this manuscript. RF, XT, and CC reviewed and revised this manuscript. All authors approved this version of the manuscript.
Funding
This work was supported by the National Natural Science Foundation of China (No. 82170697), the Natural Science Foundation of Shaanxi Province (No. 2022JM-472), and PRO·Run Foundation of Nephrology group of medical evidence-based Professional Committee of Chinese Medical Association (No. KYJ-202206-0003-3).
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Publisher’s note
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Summary
Keywords
DPP8, DPP9, cell behavior, inflammation, pyroptosis, cancer, organ fibrosis, immune regulation
Citation
Cui C, Tian X, Wei L, Wang Y, Wang K and Fu R (2022) New insights into the role of dipeptidyl peptidase 8 and dipeptidyl peptidase 9 and their inhibitors. Front. Pharmacol. 13:1002871. doi: 10.3389/fphar.2022.1002871
Received
25 July 2022
Accepted
29 August 2022
Published
12 September 2022
Volume
13 - 2022
Edited by
Andreas Von Knethen, Goethe University Frankfurt, Germany
Reviewed by
Bruno Reversade, Institute of Medical Biology (A∗STAR), Singapore
Mark Gorrell, The University of Sydney, Australia
Jelka Gabrilovac, Rudjer Boskovic Institute, Croatia
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Copyright
© 2022 Cui, Tian, Wei, Wang, Wang and Fu.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Rongguo Fu, pipifu@126.com
This article was submitted to Inflammation Pharmacology, a section of the journal Frontiers in Pharmacology
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