Abstract
Duckweeds include the world's smallest and fastest growing flowering plants that have the capacity to produce huge biomass with a broad range of potential applications like production of feed and food, biofuel and biogas. In order to achieve optimal and sustainable commercial system, it is necessary that suitable species and clones of duckweeds be identified and selected based on appropriate strategies. However, a high degree of reduction in their structural complexity poses serious problems in identification of closely related species of duckweeds, on a morphological basis. Use of molecular taxonomic tools is the present solution. The state of the art of molecular taxonomy of all the five genera of duckweeds (Spirodela, Landoltia, Lemna, Wolffiella, and Wolffia) is based mainly on the techniques of fingerprinting by amplified fragment length polymorphism (AFLP) and barcoding using sequences of plastidic DNA fragments. After more than 15 years of molecular taxonomic investigations, a certain viewpoint is now available demonstrating all five genera to be monophyletic. Also, the phenetic analyses had made huge progress in delineating the currently defined 36 species of duckweeds, although, all species cannot yet be defined with confidence. Wolffiella has turned out to be the most complicated genus as only 6 to 7 species out of the 10 can be reliably delineated. Further progress in the phylogenetic and phenetic analyses requires more advanced methods like next generation and/or whole genome sequencing. First results using the method genotyping-by-sequencing in the genus Lemna (in combination with metabolomic profiling by matrix-assisted laser desorption ionization time-of-flight mass-spectrometry (MALDI-TOF-MS) as well as AFLP and barcoding by plastidic sequences) are more promising: The species Lemna valdiviana and Lemna yungensis were united to one species, Lemna valdiviana. This reduced the total number of Lemnaceae species to 36.
Introduction
Lemnaceae (commonly known as water lens or duckweed) is a family of monocotyledonous water plants (Landolt, ; Landolt and Kandeler, ; Sree et al., ) characterized by the fastest growth rates among flowering plants (Sree et al., ; Ziegler et al., ). As a consequence, the rate of biomass production is high, which provides the basis for different practical applications of duckweeds in the areas of food and feed sustainability (Landolt and Kandeler, ; Appenroth et al., , ; Sonta et al., ) and biotechnology (Zhao et al., ; Chen et al., ; Kaur et al., ; Ren et al., ).
The biotechnological optimization as well as the commercial application of duckweeds require the knowledge of the taxa of these plants. Because of the miniaturization of the morphological units and extreme reduction of anatomical complexity, only a few experts worldwide can delineate duckweed species based on morphological markers. Considering these limitations, some decades back, Crawford and co-workers tried to delineate duckweed species based on chemical composition of flavonoids (Les et al., ) and analyzed isoforms of enzymes (allozymes), an advanced form of chemotaxonomy in that time. These authors wrote: “Allozymes were employed because they reflect discrete genetic differences and thus represent a potentially useful method for assessing whether one or two gene pools exist within what has been treated as two taxa” (Crawford et al., ). This method produced interesting results and had already offered an essential step ahead of the difficult morphological determination technique (Crawford and Landolt, ; Crawford et al., , ). With the advent and development of molecular biology tools and techniques, analysis of taxa at the level of DNA offered deeper comprehension than chemotaxonomy. Therefore, the term molecular taxonomy is now almost exclusively used in connection with several methods of DNA analysis for taxonomic delineation.
At the level of genera, Les et al. () already provided significant results demonstrating that all five genera are monophyletic taxa. Beside the delineation of species, identification of clones (Lemnaceae propagate mainly vegetatively resulting in genetically identical offsprings, called clones or strains) is also a requirement of the present day. Remarkably, the efficiency of physiological processes responsible for the commercial properties of these plants is not dependent on the genus or the species but is a characteristic of the clones of duckweeds. This clonal diversity has been proven e.g., for growth rate (Sree et al., ; Ziegler et al., ), turion formation capacity (Kuehdorf et al., ), nutritional quality (Appenroth et al., ) as well as for starch accumulation capacity (Sree et al., ; Ma et al., ). These exemplary investigations demonstrate that the physiological properties shown by a particular clone of a duckweed species is characteristic to that clone and cannot be extrapolated to the whole species or to the genus or to the family. For the screening and commercialization of clones with desirable characteristics and for maintaining these desirable genetic resources, it is, therefore, necessary to identify the particular clone of duckweed. However, clones of a given species, on a morphological basis, are highly similar and hence identification of clones requires the use of molecular tools. The progress in this approach is further supported by the increasing number of available whole genome sequences of duckweed species belonging to three of the five genera of the plant family, like Spirodela polyrhiza clone 9509 (Hoang et al., , and references therein), Lemna minor 5500 (Van Hoeck et al., ) and Lemna minor 8627, Lemna gibba 7742a, and Wolffia australiana 8730 (www.lemna.org/; for a review see An et al., ). Further, 68 clones of Spirodela polyrhiza were recently sequenced by Xu et al. () and 38 by Ho et al. ().
In the wake of the available resources, molecular taxonomic methods have attracted attention of the duckweed researchers. The aim of the present review is to address the questions: With what reliability can the presently available molecular methods be used to delineate, characterize and identify different taxa of Lemnaceae? The phylogenetic approach is of general interest as Lemnaceae occupy a unique basal position within monocot plants and we try to make it clear that the requirements for answering phenetic or phylogenetic questions are different.
Plant Family and Categorization Into Genera
Duckweeds constitute the family Lemnaceae Dumort. Although, it has been shown convincingly that Lemnaceae are very closely related to Araceae (Cusimano et al., ; Nauheimer et al., ; Choi et al., ), it has been further discussed that it is not necessary to integrate Lemnaceae into the family of Araceae (as subfamily Lemnoideae) and that this group can be treated in accordance with taxonomic rules as plant family, i.e., Lemnaceae Dumort (Appenroth et al., , ; Bog et al., , ) (Figure 1). Based on the morphological markers, Landolt (, ) had categorized the family into two subfamilies, Wolffioideae (members devoid of roots) and Lemnoideae (members with varying numbers of roots). Normally, they would not be defined as taxa because the latter is paraphyletic. However, this categorization is very useful within a morphological key of determination (Landolt, , ) of Lemnaceae species and therefore is used for practical reasons.
Figure 1
After Les and Crawford (
Delineation of Species
Although there were some preliminary attempts of use of molecular tools in the field of taxonomy of Lemnaceae (Jordan et al.,
The plant family Lemnaceae presently consists of 36 recognized species (Sree et al.,
Genera Spirodela and Landoltia
Historically, three species, Spirodela polyrhiza, Spirodela intermedia, and Spirodela punctata (synonym: Spirodela oligorrhiza) constituted the genus Spirodela (Landolt,
With the advent of molecular taxonomic tools to the family of Lemnaceae, these three species were separated into two genera, Spirodela and Landoltia (changing the nomenclature of the species, Spirodela punctata to Landoltia punctata), based mainly on the investigation of the plastidic sequence rbcL (Les and Crawford,
Table 1
| Species | Fingerprinting | Barcoding |
|---|---|---|
| GenusSpirodelaSchleid. | ||
| S. intermedia W.Koch | + | + |
| S. polyrhiza (L.) Schleid. | + | + |
| GenusLandoltiaLes & Crawford | ||
| L. punctata (G.Mey.) Les & D.J.Crawford | + | + |
| GenusLemnaL. | ||
| L. aequinoctialis Welw. | + | + |
| L. disperma Hegelm. | + | + |
| L. gibba L. | 4 groups | + |
| L. japonica Landolt | + | + |
| L. minor L. | + | + |
| L. minuta Kunth | +? | +? |
| L. obscura (Austin) Daubs | + | + |
| L. perpusilla Torr. | + | + |
| L. tenera Kurz | + | + |
| L. trisulca L. | + | + |
| L. turionifera Landolt | + | + |
| L. valdiviana Phil. | + | + |
| GenusWolffiellaHegelm. | ||
| W. caudata Landolt | + | + |
| W. denticulata (Hegelm.) Hegelm. | – | +? |
| W. gladiata (Hegelm.) Hegelm. | + | + |
| W. hyalina (Delile) Monod | – | + |
| W. lingulata (Hegelm.) Hegelm. | – | – |
| W. neotropica Landolt | + | + |
| W. oblonga (Phil.) Hegelm. | – | – |
| W. repanda (Hegelm.) Monod | – | – |
| W. rotunda Landolt | + | + |
| W. welwitschii (Hegelm.) Monod | + | + |
| GenusWolffiaHorkel ex Schleid. | ||
| W. angusta Landolt | +? | + |
| W. arrhiza (L.) Horkel ex Wimm. | + | + |
| W. australiana (Benth.) Hartog & Plas | + | + |
| W. borealis (Engelm. ex Hegelm.) Landolt | – | – |
| W. brasiliensis Wedd. | +? | + |
| W. columbiana H.Karst. | + | + |
| W. cylindracea Hegelm. | + | + |
| W. elongata Landolt | + | + |
| W. globosa (Roxb.) Hartog & Plas | – | – |
| W. microscopica (Griff.) Kurz | + | + |
| W. neglecta Landolt | – | +? |
Summary of the results of species identification by fingerprinting (AFLP) and barcoding by several plastidic fragments of 36 species of the family Lemnaceae Dumort.
+, identification possible;-, identification not possible;?, identification uncertain.
Some of the initial molecular taxonomic investigations on these genera were carried out by Les et al. (
Additionally, Bog et al. (
Genus Lemna
With the most recent results (Bog et al.,
The delineation of the species of the genus Lemna based on several plastidic sequences was published by Wang et al. (
Using DNA-barcoding most of the species of Lemna could be easily defined in several projects. Wang et al. (
We now move ahead from the root bearing members representing the subfamily of Lemnoideae to the rootless members, Wolffioideae, categorized into two genera, Wolffiella and Wolffia.
Genus Wolffiella
The genus Wolffiella represents the least investigated genus and comprises 10 species. Through the course of investigations, it turned out that this is the most difficult challenge for molecular taxonomy in the whole plant family (Bog et al.,
In general, application of AFLP or plastidic barcoding were only of limited success in this genus. Bog et al. (
Genus Wolffia
The genus Wolffia includes 11 species of the simplest morphological structure. This genus not only contains the smallest flowering plants (Bog et al.,
Bog et al. (
Conclusions and Future Perspective
The present state of molecular taxonomy has reached a level that cannot be further improved by employing the same techniques. The limits of fingerprinting by AFLP and barcoding using plastidic sequences have been tested by using high number of clones covering as much as possible the species to be tested. In summary, the above mentioned in relation to the genus Wolffia is applicable to the whole family Lemnaceae: “The results are not sufficient to identify all taxa.” This is even more evident in the genus Wolffiella. The solution can only be the use of a molecular method that provides more markers per clone for both plastidic and nuclear genomes than the above mentioned methods of fingerprinting and barcoding. This can be reached by an approach close to whole genome sequencing and next generation sequencing. Alternatively, whole genome sequencing-based selection of highly polymorphic regions like the NB-ARC-related sequences could be used when the extension to a larger number of species will be possible in future. Further, the application of the method “genotyping-by-sequencing” to molecular taxonomy, as evidenced in the genus Lemna (Bog et al.,
Statements
Author contributions
All authors contributed to the writing and correcting of the article.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
- AFLP
amplified fragment length polymorphism.Note: The genera have not been abbreviated to the starting letter during repeated use of the species nomenclature in the text in order to avoid confusion (Genera Landoltia and Lemna start with “L” and genera Wolffiella and Wolffia start with “W”).
Abbreviations
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Summary
Keywords
AFLP, DNA-barcoding, fingerprinting, Landoltia, Lemna, Spirodela, Wolffia, Wolffiella
Citation
Bog M, Appenroth K-J and Sree KS (2019) Duckweed (Lemnaceae): Its Molecular Taxonomy. Front. Sustain. Food Syst. 3:117. doi: 10.3389/fsufs.2019.00117
Received
27 July 2019
Accepted
02 December 2019
Published
17 December 2019
Volume
3 - 2019
Edited by
Marvin Edelman, Weizmann Institute of Science, Israel
Reviewed by
Agnieszka Barbara Najda, University of Life Sciences of Lublin, Poland; Tahira Fatima, Purdue University, United States; Autar Krishen Mattoo, Beltsville Agricultural Research Center (USDA), United States
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© 2019 Bog, Appenroth and Sree.
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*Correspondence: K. Sowjanya Sree ksowsree@gmail.com; ksowsree9@cukerala.ac.in
This article was submitted to Crop Biology and Sustainability, a section of the journal Frontiers in Sustainable Food Systems
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