Abstract
Apurinic/apyrimidinic endonuclease 1/redox effector factor 1 (APE1/Ref-1) is a multifunctional enzyme that is essential for maintaining cellular homeostasis. APE1 is the major apurinic/apyrimidinic endonuclease in the base excision repair pathway and acts as a redox-dependent regulator of several transcription factors, including NF-κB, AP-1, HIF-1α, and STAT3. These functions render APE1 vital to regulating cell signaling, senescence, and inflammatory pathways. In addition to regulating cytokine and chemokine expression through activation of redox sensitive transcription factors, APE1 participates in other critical processes in the immune response, including production of reactive oxygen species and class switch recombination. Furthermore, through participation in active chromatin demethylation, the repair function of APE1 also regulates transcription of some genes, including cytokines such as TNFα. The multiple functions of APE1 make it an essential regulator of the pathogenesis of several diseases, including cancer and neurological disorders. Therefore, APE1 inhibitors have therapeutic potential. APE1 is highly expressed in the central nervous system (CNS) and participates in tissue homeostasis, and its roles in neurodegenerative and neuroinflammatory diseases have been elucidated. This review discusses known roles of APE1 in innate and adaptive immunity, especially in the CNS, recent evidence of a role in the extracellular environment, and the therapeutic potential of APE1 inhibitors in infectious/immune diseases.
Introduction
APE1 - From Structure to Function
Apurinic/apyrimidinic endonuclease 1/Redox Factor-1 (APE1/Ref-1) is a multifunctional 35.6 kDa protein that responds to DNA damage (primarily DNA damage caused by oxidative stress) (1, 2). The C-terminal domain of APE1 processes apurinic/apyrimidinic (AP) sites generated by DNA glycosylase in the base excision repair (BER) pathway. The AP endonuclease activity of APE1 hydrolyzes the phosphodiester bond at these sites, generating a 3′-hydroxyl end (3′-OH) and a 5′-deoxyribose phosphate (5′-dRP) terminus. DNA polymerase β (Polβ) then removes the 5′-dRP and inserts the correct nucleotide. DNA ligase IIIα in complex with XRCC1 seals the phosphodiester bond, terminating the BER pathway. Occasionally, several nucleotides are removed by other enzymes through a sub-pathway known as long patch repair (1, 3, 4). Although other endonucleases act in the BER pathway, APE1 is the major AP endonuclease that repairs damage caused by oxidative stress, maintaining genome integrity in mammals (2, 5).
The N-terminal domain of APE1 has redox activity and contains a nuclear localization signal in its first 33 amino acids. APE1 reduces the cysteine residues of target transcription factors (TFs) through exchange of protons with cysteine residues present in its N-terminal region (6). The functional domains of APE1 are shown in Figure 1. The redox function of APE1 activates TFs, such as NF-κB, p53, activator protein 1 (AP-1), hypoxia-inducible factor-1α (HIF-1α), signal transducer and activator of transcription 3 (STAT3), and early growth response 1 (EGR1) (7–12). Therefore, APE1 regulates the expression of genes that directly affect several cellular processes, including inflammatory responses (13, 14). For example, APE1 reduces HIF-1α, increasing its DNA-binding activity. This induces expression of vascular endothelial growth factor (VEGF), which promotes angiogenesis (15–17). Additionally, because APE1 regulates STAT3, NF-κB, EGR1, and AP-1, it directly influences the immune system by regulating the expression of cytokines and chemokines, including tumor necrosis factor alpha (TNFα), interleukin (IL)-6, and IL-8 (18–21). APE1 also interacts with ERK2 rescuing ERK2 from oxidative inactivation through its redox activity (22). The MEK-ERK1/2 pathway is a critical regulator of lipopolysaccharide (LPS)-induced responses (23).
Figure 1
Representative scheme of the functional domains of Apurinic/apyrimidinic endonuclease 1/redox effector factor 1 (APE1/Ref-1). The N-terminal domain (amino acids 1 to 127) contains redox activity and the nuclear localization signal. The C-terminal domain (amino acids 161 to 318) contains apurinic/apyrimidinic endonuclease activity. Both domains may be involved in the transcriptional regulation of some genes, such as VEGF.
The DNA repair activity of APE1 has recently been observed to play a role in transcriptional regulation. 8-oxoguanine (8-oxoG) is the most frequent DNA lesion caused by oxidative stress (24). This lesion is removed by 8-oxoguanine glycosylase (OGG1) and APE1 in the BER pathway. The presence of 8-oxoG can delay RNA polymerase progression, inducing transcriptional arrest and initiating DNA repair. Thus, 8-oxoG functions as a repressor in transcriptional regulation of genes (25). Some studies suggest that 8-oxoG can function as an epigenetic signal that favors the expression of several genes (26–29). Pan et al. observed that TNFα treatment induces an increase in 8-oxoG and OGG1 binding in promoters of proinflammatory genes, stimulating NF-κB binding to these sites, leading to gene activation and cytokine expression (27). Corroborating these data, 8-oxoG generation in G-quadruplex promoter sites favors OGG1 recruitment, generating AP sites that are substrates of APE1. The presence of APE1 in these promoters leads to TF recruitment and gene activation (30). Similarly, demethylation of histone H3, mediated by lysine-specific histone demethylase 1A, produces H2O2, leading to formation of local 8-oxoG lesions. Occurrence of 8-oxoG, and recruitment of OGG1 and APE1 have been observed to enhance the DNA-binding activity of MYC to its target gene promoters, thereby increasing gene expression (31).
Enzymes of the BER pathway, including APE1, are associated with active chromatin demethylation. This process is initiated by oxidation of 5-methylcytosines by ten-eleven translocation (TET). This oxidized base is removed by glycosylases such as thymine-DNA glycosylase (TDG), which generate AP sites. Thus, the endonuclease activity of APE1 is also involved in regulating chromatin and gene expression (24–27) [reviewed in (32)]. Thus, some genes, including VEGF, and cytokines, are regulated by the redox and repair functions of APE1 (33, 34).
In addition to regulating TF activity and maintaining genomic stability through DNA damage repair, APE1 plays an essential role in cell senescence by maintaining telomere stability and size through interaction with the telomere-protective proteins TRF1 and TRF2, and with POT1 (35, 36). APE1 also processes mRNAs that contain oxidized bases, thus preventing abnormal protein synthesis (37, 38). In addition to regulating mRNAs, APE1 can cleave siRNAs in vitro (38). APE1 has also been linked to numerous pathological processes, owing to its multiple functions in cellular homeostasis. APE1 is frequently overexpressed in cancer cells and is associated with increased resistance to chemotherapy (39). APE1 participates in signaling pathways involved in immune and inflammatory responses, which regulate gene expression of several innate and adaptive immune system mediators and is also involved in antibody production. In the following sections, the roles of APE1 and its functions in the immune system are described.
APE1 in Innate Immunity
The mammalian immune system is divided into innate and adaptive systems. The innate immune system recognizes pathogen-associated molecular patterns (PAMPs) and damage-associated molecular patterns (DAMPs) through germline-encoded receptors, such as pattern recognition receptors (PRRs). In the presence of PAMPs and DAMPs, cells of the innate immune system initiate an acute inflammatory response by secreting cytokines, chemokines, reactive oxidative species (ROS), and other inflammatory mediators to attract immune cells to the site of damage (40–42). ROS production plays a central role in inflammatory signaling by eliminating pathogens in phagocytic cells or acting as signaling molecules. ROS are endogenously produced in the mitochondria, peroxisomes, and endoplasmic reticulum, and by NADPH oxidases (NOX) in phagocytes and endothelial cells (42, 43). Chronic ROS exposure or imbalance between ROS and antioxidants plays a critical role in the progression of inflammatory diseases, including inflammatory bowel disease (44, 45), hepatitis (46), atherosclerosis (47), and multiple sclerosis (48).
At least two highly interconnected ROS-related processes occur in the innate immune system. First, ROS can induce an inflammatory response leading to APE1 expression. Several studies have shown that ROS induces APE1 expression and activity in different cell types, including macrophages and human gastric epithelial cell lines infected with Helicobacter pylori (49–51). In these cells, H. pylori infection and TNFα treatment induced activation of NF-κB, and AP-1 and IL-8 expression were inhibited by APE1 silencing (52, 53). APE1 inhibition also prevented H2O2-induced increase in IL-6 and IL-4 expression in mast cells (54). Antioxidant enzymes, such as Peroxiredoxin 1, also appear to regulate cytokine and chemokine expression in an APE1-dependent manner. Nassour et al. reported that APE1 interacts with Peroxiredoxin 1 in HeLa cells under physiological conditions or with H2O2 treatment. This interaction may prevent APE1 from reducing TFs, including NF-κB, and decrease IL-8 expression, attributing an APE1-dependent anti-inflammatory role to Peroxiredoxin 1 (21).
Second, the inflammatory response can induce ROS production. For example, APE1-deficient human cells infected with H. pylori show high Rac1 activation and NOX1 expression. Consistent with these findings, APE1 overexpression decreased ROS levels, Rac1 activation, and NOX1 expression in H. pylori-infected cells. APE1, through its N-terminal lysine residues, interacts with Rac1, decreasing NOX1 expression and ROS generation (55). Therefore, APE1 appears to have an inhibitory effect on ROS production. Granzyme K is a tryptase that is highly expressed in natural killer (NK) cells and is necessary for NK cell-mediated cytolysis. Granzyme K -mediated apoptosis is initiated by ROS accumulation and cytochrome C release (56). Granzyme K cleaves APE1, abrogating its antioxidant activity (57). The resultant decrease in APE1 levels correlates with NK cell-mediated apoptosis of tumor cells or virus-infected cells, indicating that APE1 is essential for maintaining cell viability.
Cytokine- and chemokine-mediated signaling is involved in both innate and adaptive immunity. These signaling molecules are often transcriptionally regulated by TFs, including NF-κB, AP-1, EGR1, and STAT3, which are activated by the redox function of APE1, which in turn increases their DNA-binding capacity (11, 12, 58). APE1 exerts a proinflammatory role in stimulating cytokine and chemokine expression. APE1 knockdown in keratinocytes treated with synthetic lipopeptide or zymosan resulted in decreased NF-κB activation and TNFα and IL-8 expression (18). Treatment of macrophages with APE1 redox inhibitor E3330 decreases NF-κB and AP-1 activation, and consequently, TNFα, IL-6, IL-12, PGE2, and COX-2 expression (19). E3330 also inhibits IL-8 expression in TNFα-induced JHH6 cells (59). E3330 (also called APX3330) is a quinone derivative and a specific inhibitor of APE1 redox functions (60–62). E3330 acts by binding to APE1 and increasing the formation of disulfide bonds between cysteine residues (Cys65 or Cys93) which are critical for redox function (61, 63), without affecting AP endonuclease activity (60–62, 64). In addition, in a gastric inflammation model of H. pylori, APE1 redox inhibition reduced cytokine expression, decreased immune cell infiltration, and exerted neuroprotective effects on the enteric nervous system (65). These studies demonstrate the role of APE1 redox activity as a positive regulator of cytokine and chemokine expression in innate immune system cells.
Many studies have demonstrated dual roles of APE1 in inflammation. Ectopic APE1 overexpression appears to play an anti-inflammatory role in some cells. In the macrophage-like THP-1 cell line, APE1 transfection decreased the expression of IL-6, TNFα, and IL-1 induced by oxidized LDL (66) and TNFα and COX-2 expression induced by HMGB1 (67). In addition, using the APE1 gene cloned in an expression vector and administered via retrograde renal vein injection, Maruyama et al. demonstrated that APE1 expression inhibits the development of tubulointerstitial fibrosis and modulates the immune system through different pathways, including IL-6, TNFα, and IL-1β (68). The dual role of APE1 in cytokine and chemokine expression can be attributed to specific functions of APE1 in different cell types. Yuk et al. observed a contradictory effect in the same cell line (THP-1) by analyzing the effects of APE1 overexpression and siRNA knockdown on HMGB1-induced inflammatory responses. The authors observed that siRNA-mediated inhibition decreased APE1 nuclear and cytoplasmic expression and impaired HMGB1-mediated cytokine expression and MAPK pathway activation. Furthermore, APE1 overexpression by adenoviral vectors has been reported to increase cytoplasmic APE1 expression, leading to a decrease in ROS levels, cytokine secretion, and cyclooxygenase-2 expression. A reduction in p38 and c-Jun N-terminal kinase activation and extracellular release of HMGB1 has also been observed (67). The authors suggested that APE1 compartmentalization may explain the contrasting functions described above (67). The role of cytoplasmic APE1 in the inflammatory process remains to be clarified.
APE1 deficiency in mice is associated with increased expression of inflammatory mediators in senescent cells. APE1 deficiency is also associated with decreases in the size of several organs including the brain (14). These events may be associated with senescence-associated secretory phenotype stimulation, which includes changes in the cell protein secretion profile, such as proinflammatory cytokines (IL-1α and IL-6), chemokines (IL-8), and growth factors (VEGF), many of which are regulated by the redox function of APE1 (69).
NF-κB and AP-1 are the main TFs observed in studies of APE1 expression or inhibition in inflammatory models. However, several TFs interact with the APE1 redox region. Occasionally, these factors also play a role in the inflammatory response or immunity. For example, HIF-1α, a classical target of APE1 redox activity (15, 16),is essential in glycolysis and angiogenesis. HIF-1α also participates in the immune response, and its inactivation decreases macrophage invasion, aggregation, and motility (70). APE1 redox function also regulates STAT3 transcriptional activity (7), affecting dendritic cell maturation and anti-inflammatory signaling in phagocytes and inflammatory responses related to cancer (71, 72). Table 1 lists the principal TFs regulated by APE1, their functions, and studies reporting their involvement in the immune response.
Table 1
| TFs | Immune system function | Function inhibited | Refs |
|---|---|---|---|
| NF-κB | Inflammation, immunity, differentiation, cell growth, tumorigenesis, and apoptosis | Redox and repair | (10, 27) |
| AP-1 | Proliferation, differentiation, and apoptosis | Redox | (11) |
| STAT3 | Dendritic cells maturation, activation, and anti-inflammatory signalization in phagocytes | Redox | (7, 72) |
| HIF-1 | Invasion, aggregation and motility of macrophages, and energy homeostasis | Redox and repair | (16, 33, 73) |
| EGR1 | Differentiation of myeloid cells | Redox | (74, 75) |
| P53 | Apoptosis, antiviral defense, induction of type I IFN, enhanced pathogen recognition, and immune checkpoint regulation | Redox and redox-independent functions | (76–78) |
| PAX5 | B lymphopoiesis | Redox | (79, 80) |
| PTEN | DC maturation and T cell polarization | – | (76, 81) |
Transcription factors regulated by apurinic/apyrimidinic endonuclease 1/redox effector factor 1 (APE1/Ref-1) and their functions in the immune response.
In general, the studies cited above describe the associations of APE1 redox function or reduced APE1 expression with inflammatory regulation. However, our group recently showed that inhibition of AP site repair by methoxyamine inhibits the expression of IL-8, IL-6, TNFα, IL-10, and MCP1 in LPS-induced U937 cells (34). This treatment also decreased expression of genes involved in prostaglandin biosynthesis and MyD88-independent toll-like receptor signaling pathway genes. Reduced ELK1 expression after chemical inhibition of APE1 by E3330 or methoxyamine was also observed. ELK1 expression is regulated by ERK pathway, EGR1, and TET enzymes (82–84). In this context, our findings suggest that both redox and DNA repair activities of APE1 regulate ELK1 expression through independent but overlapping mechanisms (34). Together, these data suggest a role of DNA repair in regulating gene expression, influencing the expression of inflammatory mediators.
Figure 2 summarizes the main roles of APE1 in the inflammatory response. The potential of this response to be cell type-specific must be considered. Therefore, more studies are required to better understand the role of APE1 repair activity in the transcriptional regulation of proinflammatory genes.
Figure 2
Involvement of APE1 in expression of cytokines and chemokines and reactive oxygen species (ROS) regulation. (A) The stimulation of Toll-like receptors promotes NF-κB activation and its translocation to the nucleus. APE1 redox function reduces transcription factors, such as NF-κB and AP-1, and increases expression of cytokines. APE1 also inhibits Rac1 and ROS production by NADPH oxidase. Inhibition of APE1 redox function decreases the expression of NOX1, P65, and ELK1 (represented in red color). (B) The DNA repair activity of APE1 also regulates expression of cytokines. 8-Oxoguanine DNA glycosylase and APE1 recruitment to damaged sites is essential for downstream recruitment of transcription factors. Additionally, inhibition of APE1 DNA repair activity decreases the expression of various genes/proteins (represented in red color).
APE1 in Neuroinflammation
Increased APE1 expression in the nervous system is well-documented (85–87). APE1 expression varies in different tissues under normal physiological conditions. High APE1 levels are observed in the dentate gyrus granule cells, cerebellar Purkinje cells, and piriform cortex neurons (85). However, APE1 expression is significantly increased in the brain and spinal cord of individuals affected by diseases including amyotrophic lateral sclerosis (ALS), compared to healthy controls (88). Excessive ROS production in neurons in response to certain stimuli is associated with APE1 expression (89). ROS originate from many sources but have mainly been attributed to high mitochondrial respiration activity or malfunctioning organelles. Thus, many studies have focused on neuronal mitochondrial dysfunction during ischemia to assess the role of APE1 (90, 91).
APE1 upregulation generally protects neuronal structure and function during transient global cerebral ischemia (90, 91). This protection has been mainly attributed to its role in BER, which corrects damage induced by ROS. Although BER is the predominant mechanism for repairing oxidized DNA damage in neurons, APE1 also participates in non-homologous end-joining repair mechanisms in cortical neurons (92). In addition, APE1 helps regulate the nucleotide excision repair pathway to repair DNA adducts induced by cisplatin in sensory neurons (93).
Oxidative stress in neurons plays a critical role in aging and in the pathogenesis of several neurological diseases, including ALS, Parkinson’s disease, Alzheimer’s disease, and brain infections, such as bacterial meningitis (94–98). The inflammatory response in the nervous system is one of the primary endogenous sources of ROS in some neurological conditions, and APE1 plays an essential role in these conditions. For example, during neuroinflammation caused by pneumococcal meningitis, higher APE1 expression was observed in the cortex and hippocampus of rats than that in mock-infected animals. Rats supplemented with vitamin B6 showed reduced APE1, glutamate and ROS levels, and decreased cell death and oxidative stress during neuroinflammation (99). Furthermore, in aluminum chloride-induced neuroinflammation in rats, administration of resveratrol as an anti-inflammatory agent was associated with increased APE1 levels and reduced inflammatory responses (100).
The functions of APE1 in inflammatory responses during neuroinflammation are not entirely understood. Some studies have attributed a coactivator role to APE1 redox activity associated with NF-κB and AP-1, promoting proinflammatory cytokines, such as TNFα and IL-8 (10, 18, 52, 101). APE1 translocation from the nucleus to the cytoplasm, followed by p50 reduction, appears to be an essential mechanism for the binding of NF-κB to DNA, thereby triggering inflammation (102, 103). In rats with inflammatory pain, changes in subcellular APE1 distribution can be effected via intrathecal injection of E3330, leading to reduced IL-6 levels and alleviation of pain (104). Beyond reducing inflammation, changes in APE1 expression and subcellular distribution also seem to be mediated by APE1 redox function (104).
To observe the role of extranuclear APE1 in regulating neuroinflammatory processes, APE1 with a deleted N-terminal nuclear localization signal (ΔNLS-APE1) was overexpressed in hippocampal astrocytes stimulated with LPS (105). Cytoplasmic APE1 overexpression suppressed NF-κB transcriptional activity and reduced TNFα and iNOS levels, but did not reduce AP-1, showing an anti-inflammatory effect of APE1. These studies also suggested that the inhibitory effect of APE1 on LPS-induced NF-κB activation was not mediated by IκB kinase activity. Additionally, overexpression of APE1 inhibited p300-mediated acetylation of p65 by suppressing intracellular ROS levels following LPS treatment (105). Acetylation of p65 plays a vital role in regulating the inflammatory response (106). The above study demonstrated the involvement of APE1 in this mechanism.
In summary, APE1 plays a multifunctional role in regulating neuroinflammation, acting as an activator or repressor of TFs depending on cellular redox status, APE1 expression level, subcellular compartmentalization, and post-translational modifications, exerting a proinflammatory or anti-inflammatory effect depending on cellular context.
APE1 in Adaptive Immunity
The adaptive immune system is triggered by responses generated by the innate immune system upon antigen contact at the infection site. T and B-lymphocytes are involved in the adaptive response and responsible for secreting cytokines and antibodies, respectively. These cells can proliferate and differentiate into memory cells with the help of specialized cells in peripheral lymphoid organs, allowing faster and more efficient responses when encountering the same antigen a second time (107, 108).
The role of APE1 in adaptive immunity has been described in several studies (Figure 3). According to Akhter et al. (109), the redox activity of APE1 is essential for T helper cell 1 (Th1) response through antigen-presenting cells. The authors observed that in splenocytes from OT-II mice stimulated with ovalbumin, treatment with E3330 increased IFN-γ-producing T cells by altering functions of antigen-presenting cell, suggesting suppression of Th1 immune responses. Inhibition of APE1 redox function induced p38 MAPK activation, upregulation of IL-12 gene expression, and IL-12 cell surface retention. APE1 redox activity also regulated Pax5a, a TF essential for B cell development. Repression of APE1 protein synthesis blocked CD40-mediated B cell activation by impairing Pax5a activity (110).
Figure 3
Effect of APE1 redox and repair activities in adaptive immunity. Repair activity of APE1/Ref-1 participates in class switch recombination, while redox activity downregulates Th1 responses and regulates B cell activation.
Another essential process in the adaptive immune response is class switch recombination (CSR), which is responsible for antibody diversity and is initiated by activation-induced cytidine deaminase (AID) in B cells located in the germinal center (GC) (111). APE1 endonuclease activity is involved in CSR through recognition of AP sites created by uracil-DNA glycosylase (UNG). AID recruits UNG, which converts cytosine into uracil, initiating the BER pathway. This process is crucial for IgA class switching. Although, APE1 redox function regulates CSR, this process is still observed in cells deficient in APE1 endonuclease activity (112). APE1 also mediates CSR through IL-6 signaling, and is involved in proper IgA expression (112, 113). However, once in the GC, B cells undergo somatic hypermutation (SHM), also initiated by AID, and proliferate rapidly, inhibiting the activities of UNG and APE1. APE1 expression is lower in GC B cells than in non-GC B cells and contributes to an increase in SHM (111). According to Xu et al. (114), APE1 endonuclease activity is dispensable for SHM, but may be involved in processing of DNA ends, enabling the ends to participate in CSR.
Due to the multifunctional nature of APE1, researchers have focused on roles of APE1 in tumor cells, and have demonstrated that APE1 expression is associated with poor prognosis in some cancer types including lung, liver, and gastric cancers (115–118). In patients with non-small cell lung cancer, APE1 expression is correlated with tumor-infiltrating lymphocytes, and low APE1 expression together with CD4+ T cell infiltration is correlated with good prognosis, suggesting that APE1 levels regulate the function of CD4+ T cells (119). APE1 was also found to be active in leukemia T cells; however, when inhibited by E3330, it promoted apoptosis and downregulation of survival genes (120). Furthermore, CD8+ T cells and NK cells can release granzymes, such as granzyme A, which cleaves APE1, blocking cellular repair and leading to apoptosis (121). Thus, APE1 could serve as a molecular target for targeted therapies.
Interestingly, APE2 (a less efficient homolog of APE1) was highly expressed in splenic B cells in vitro. APE2 deficiency causes severe defects in lymphopoiesis, and prevents B cell progenitors from proliferating in the bone marrow, indicating that APE2 also plays a role in adaptive immunity. APE2 expression is also increased in GC B cells, and protects proliferating B cells from oxidative damage (111, 122–127). Guikema et al. demonstrated that APE1 and APE2 are essential for CSR, as a decrease in this process was observed in splenic B cells of ape1+/−, ape2Y/−, and double-deficient mice compared to wild type mice (122). However, the role of APE2 in CSR remains unclear, as APE2 gene deletion in CH12F3 cells does not affect CSR even in APE1 deficient cells (125). APE2 deficient mice show decreased SHM frequency, indicating that APE2 is involved in this process. APE2 interacts with proliferating cell nuclear antigen, facilitating the recruitment of translesion polymerases to AID-induced lesions, which favors an increase in mutagenesis (111, 127). Stavnezer et al. demonstrated that downregulation of APE1 and high expression of APE2 in GC B cells are associated with error-prone repair of AID-induced lesions, and contribute to an increase in mutations in A:T base pairs (111).
APE1 as a Serologic Biomarker
In recent years, several studies have shown the presence of extracellular APE1 and have suggested its potential use as a biomarker in certain clinical conditions. Although most studies have focused on cancer models which show high APE1 expression (128–131), increasing interest is focused on characterizing APE1 expression in plasma and serum in different diseases, including aging-associated disorders. Serum APE1 levels in patients with coronary artery disease and rheumatoid arthritis have been shown to be elevated compared to levels in healthy controls (132, 133). Furthermore, an experimental murine myocarditis model showed that serum APE1 levels increased until later infection, suggesting the potential use of APE1 as a valuable tool to assess myocardial injury without endomyocardial biopsy (134). Serum APE1 autoantibodies have also been detected in humans. In patients with non-small cell lung cancer, serum APE1 autoantibodies were significantly higher than those in healthy controls, and were closely related to APE1 antigen levels in tumor tissues and peripheral blood (135). Although significant evidence shows that APE1 is delivered through exosomes in response to genotoxic stresses (136), a recent study showed the endogenous hormone 17β-estradiol (E2) significantly increased APE1 secretion in plasma of ovariectomized mice (137). These data suggest that APE1 secretion may also be a natural response in cellular physiology that does not necessarily depend on stress. Therefore, the extracellular functions of APE1 require further investigation.
Some studies have suggested an essential role of APE1 in triggering cell-to-cell communication in the inflammatory response of the local tissue microenvironment. In monocytes secreting APE1 upon inflammatory challenges, extracellular APE1 treatment increased the binding of phospho-p65 to the IL-6 promoter, resulting in activation of gene expression. High IL-6 expression suggests a possible distinct signaling cascade initiated via cell surface binding of extracellular APE1 (20). Recently, APE1 was shown to be upregulated in aortic endothelial cells and macrophages of atherosclerotic mice, and its plasma levels were positively correlated with neutrophil/lymphocyte ratios, which indicate systemic inflammation (138). Anti-inflammatory effects have also been associated with extracellular APE1. Using a secretory APE1 adenoviral vector system, Joo et al. evaluated the role of secreted APE1 in cell culture and LPS-induced systemic inflammation in mice. Extracellular APE1 inhibited TNFα-induced VCAM-1 expression in human umbilical vein endothelial cells and LPS-induced Cox-2 expression in Raw264.7 cells. Secreted APE1 in the blood showed an anti-inflammatory effect in mice, as LPS-induced systemic inflammation was reduced together with a decrease in myeloperoxidase release and VCAM-1 expression. This anti-inflammatory effect was associated with APE1 redox function, as mutation in its cysteine residues (C65A/C93A) affected its anti-inflammatory activity. In addition, extracellular APE1 resulted in lower levels of TNFα, IL-1β, and IL-6, and chemotactic cytokines, including MCP-1, in LPS-challenged mice (139). In TNFα-stimulated endothelial cells treated with trichostatin A, an inhibitor of deacetylases, increased protein acetylation, induction of APE1 secretion, and inhibition of TNFα receptor 1, leading to a considerable reduction in VCAM-1 expression were observed. This anti-inflammatory activity may be associated with conformational changes in TNFα receptor 1 via thiol-disulfide exchange through the redox activity of extracellular APE1 (140, 141).
To date, the functions of extracellular APE1 and the secretory mechanisms involved are poorly understood. A classical secretory signal peptide is not found in APE1 (141). However, two main nonclassical mechanisms have been proposed: secretion via exosomes (136, 142) and ATP-binding cassette (ABC) transporter A1 (143). Furthermore, these signaling mechanisms for APE1 translocation from the nucleus to the cytoplasm and subsequent secretion into the extracellular environment seem to depend on acetylation of lysine residues (K6R/K7R) (141). Acetylation is required to direct APE1 to the plasma membrane for translocation via the ABCA1 transporter (143). The importance of APE1 acetylation for modulating DNA repair activity is well known (144), but the reason for acetylation of extracellular APE1 is poorly understood. Cell-to-cell communication in the extracellular environment appears to be insensitive to unmodified extracellular APE1, requiring post-translational modification to trigger responses including cell death. In triple-negative breast cancer cells, acetylated APE1 initiates apoptosis by binding to the receptor for advanced glycation end products, resulting in significant decrease in cell viability (142). Some studies have demonstrated that secreted APE1 retains redox function (140) and DNA repair activity (136). Mangiapane et al. demonstrated that APE1 is secreted through exosomes from several cancer cell lines. The authors identified APE1 p37 and APE1 p33, forms generated by proteasomal degradation, in exosomes. The two forms are enzymatically active, and under genotoxic stress, secretion of APE1 p33 is stimulated, suggesting that APE1 may be a new damage-associated molecular pathway factor, with p33 and p37 forms playing different roles. There is still much to discover about the function of extracellular APE1 and its pathways to establish APE1 as a promising biomarker with high sensitivity and specificity. However, post-translational modifications and complex interactions between APE1 and several targets limit its use as a serological biomarker for specific diseases.
APE1 Single-Nucleotide Polymorphisms and Immune/Infectious Diseases
Several APE1 variants have been identified in humans (145, 146). Most of these genetic variants are single nucleotide polymorphisms (SNPs) and some have been linked to genomic instability and carcinogenesis (147, 148). Owing to its high frequency in the human population, the most studied and cited APE1 SNP is rs1130409 (c.444T>A). The nucleotide change (T>A) results in substitution of aspartic acid (D) for glutamic acid (E) at position 148 (D148E), located between the redox and AP endonuclease domains of APE1. Despite its high frequency in the global population (~45%, in dbSNP, NCBI) (149), the clinical significance of this SNP has not been reported in ClinVar, and its functional significance has been predicted to be benign, unknown, or nonexistent (146, 149–151). However, several associations with conditions, including sporadic colorectal, gastric and lung cancers (152–154) and infectious diseases, such as meningitis, have been reported (155). In a study on bacterial meningitis, patients carrying the D148E polymorphism had reduced levels of IL-6, IL-1Ra, IL-8/CXCL8, and MCP-1/CCL2 compared with patients not harboring the polymorphism. In addition, variant allele carriers show more DNA damage accumulation, and children with the D148E allele have a higher IgG/IgA ratio (155). These findings show that this SNP affects the role of APE1 in immunoglobulin production, DNA repair, and expression of cytokines and chemokines. Recently, it was demonstrated that the presence of the D148E polymorphism results in protein structural instability that can affect the ability of APE1 to associate with other BER enzymes (156).
Inflammatory and immune responses are also associated with DNA damage and carcinogenesis. It has been noted that DNA damage and inflammation can promote a positive feedback loop which can drive mutations and consequently, cancer development (157). Immune cells and inflammatory mediators are directly involved in tumor processes, such as angiogenesis, cell proliferation, and invasiveness (158). Meira et al. observed that alkyladenine DNA glycosylase deficiency in a mouse colitis model increased tissue damage and neoplasia development compared to control mice (159). Ulcerative colitis is a chronic inflammatory disease associated with an increased risk of cancer, and Bardia et al. observed that the genotype frequency of APE1-D148E was higher in patients with ulcerative colitis than in healthy controls. In addition, they also observed an increase in necrotic and late apoptotic cells and ROS levels in patients harboring this SNP (160). APE1-D148E is also associated with the development of colorectal cancer (161). Inhibition of APE1 redox function exerts neuroprotective effects on the enteric nervous system, as observed in a spontaneous chronic colitis mouse model (65).
R237C is another variant associated with endometrial cancer (150) and is characterized by the formation of weaker complexes with DNA and impaired association with downstream enzymes in the BER pathway, including XRCC1 and Pol β. The R237C variant showed an approximately 60% decrease in exonuclease function compared to the wild-type enzyme, and an ~3-fold reduction in 3′ to 5′ exonuclease activity (151) and AP incision capacity in nucleosomes (162), but the AP incision activity on naked DNA was not affected (162).
In a study of patients with immunoglobulin A deficiency and common variable immunodeficiency syndrome, two novel APE1 SNPs were identified: Q51H (rs1048945) and one in the 5′ UTR (rs2307490), only the latter showed an association with common variable immunodeficiency syndrome (163). Another ten polymorphisms were investigated in a study that analyzed the structural effects of amino acid changes in the APE1-DNA complex using predictive methodologies. Two of these were predicted to be deleterious variants, I64T (rs61730854) and P311S (rs1803120), and have been suggested as suitable biomarkers to evaluate the risk of certain diseases (164).
L104R and D283G are uniquely associated with ALS, also known as Lou Gehrig’s disease (165), but this association needs to be confirmed. ALS is a neurodegenerative disease caused by loss of motor neurons and glial reactions. Neuroinflammation is an early event in the development of this disease. Immune system genes C9orf72, TBK1, and OPTN are causative genes for ALS (166). Increased APE1 expression has been observed in patients with ALS (88). Furthermore, increased interaction between APE1 and NPM1, observed in patients with C9orf72 mutations, suggests high APE1 repair activity (167). However, the roles of APE1 and SNPs in ALS development and their relationships with the immune system require further investigation.
Finally, the influence of APE1 SNPs on redox and repair activities should be further investigated. Furthermore, owing to their varied roles in the immune response, it is necessary to study the effects of APE1 variants on susceptibility to diseases associated with immune, infectious, or inflammatory components.
APE1 Inhibitors and Potential Therapeutic Drugs
Several compounds have been reported as APE1 inhibitors. Some of these compounds inhibit APE1 directly, while others have indirect actions. Despite the recent discovery of the involvement of AP sites in regulation of inflammatory response, inhibition of DNA repair is not the best alternative for treating inflammatory and immune disorders. Accordingly, inhibitors of endonuclease activity have been investigated for cancer treatment. The overexpression of APE1 is associated with resistance to chemotherapy. Therefore, inhibition of APE1 associated with temozolomide treatment has been used as an alternative to increase chemotherapeutic efficacy in cancer treatment (168).
Methoxyamine (MX) is an alkoxyamine derivative and indirect APE1 endonuclease activity inhibitor. MX can bind to abasic sites, thereby blocking endonuclease activity (169, 170). MX has been studied in clinical trials for the treatment of solid tumors and lymphoma (NCT01851369). Although MX decreased the expression of LPS-induced cytokines and negatively regulated genes involved in prostaglandin production in monocytes (34), the role of MX in inflammatory disorders requires further exploration. Similarly, lucanthone inhibits DNA repair activity of APE1 without affecting the redox function (39) and is in phase II clinical trials for treatment of brain metastases secondary to non-small cell lung cancer (NCT02014545).
APE1 redox function has been studied more in relation with inflammatory and immune disorders due to its role in regulating TFs. The APE1 redox inhibitor E3330 has been suggested as a potential treatment for neoplasms, as it can inhibit the growth and migration of pancreatic tumor cells (63) and also exerts inhibitory effects in other cancer types (13). A recent phase I clinical trial in patients with cancers showed that E3330 treatment was safe (171, 172). However, the therapeutic potential of E3330 in inflammatory diseases requires further exploration. The protective effects of E3330 have been observed in in vivo studies of liver diseases, such as alcoholic liver injury (173) and hepatitis in mice, in which E3330 treatment mitigated TNFα, AST, and ALT levels in the plasma (174). In Sprague Dawley rats, E3330 decreases IL-6 expression and inflammatory pain sensitization caused by complete Freund’s adjuvant (104). Recent studies have shown that E3330 could be a promising therapeutic strategy for inflammatory bowel disease. Winnie mice with spontaneous chronic colitis treated with an APE1 inhibitor showed decreased rectal prolapse, edema, and reduced bleeding after 14 days of treatment. In addition, mice also showed decreased loss of mesenteric neurons, reduced oxidative stress, and associated DNA damage (65).
Resveratrol is a natural phenol with antioxidative, anti-inflammatory, anticancer, and anti-neurodegenerative properties (175). In vitro studies have shown that resveratrol can inhibit the redox activity of APE1 and decrease AP-1 DNA binding (176). However, it remains unclear whether resveratrol is a direct and specific inhibitor of APE1. In LPS-induced U937 monocytes, the addition of resveratrol did not directly affect APE1 expression, but reduced cytoplasmic localization and acetylation of APE1, contributing to downregulation of the inflammatory response (177). Another natural compound, curcumin, has also been described as an APE1 redox inhibitor. Similar to resveratrol, curcumin exhibits anti-inflammatory, antioxidative, and antineoplastic effects. An in vitro study showed that curcumin reduces the APE1 dependent DNA-binding of AP-1 (178). Other studies have shown that curcumin regulates APE1 expression (179, 180). Additionally, isoflavones found in soybeans, including genistein, daidzein, and glycitein, have been studied as APE1 inhibitors and potential therapeutic options for cancer. Isoflavones have been shown to suppress radiation-induced APE1 expression and decrease HIF-1α and NF-κB DNA binding in A549 cells (181). Similar results have been observed in PCa and PC3 cells (182, 183). Liu et al. observed that genistein treatment decreased APE1 expression and TGF-β1, IL-1β, TNFα, and IL-6 levels in the serum of mice with radiation-induced pneumonitis (184). Despite these findings, evidence that these natural compounds act directly to inhibit APE1 remains limited. Therefore, E3330 and its analogs are currently the APE1 inhibitors with the most potential for use in inhibiting the inflammatory response and immune system.
Conclusions
APE1 plays multiple roles in immune responses, including ROS regulation and cytokine expression in cells mediating innate immunity, including monocytes (34), macrophages (19), keratinocytes (18), dendritic cells (7), neurons (94, 95, 97, 99), and astrocytes (105), and regulation of B cell activation and CSR in adaptive immunity (112). Despite its role in cytokine expression, it is still necessary to determine whether this regulatory control extends to all cell types or is cell type-specific. Additionally, it is necessary to observe how different stimuli influence this regulation. For example, whether the effect of APE1 is the same in a bacterial-triggered response (e.g., LPS), or virus-triggered response, or by transcriptional regulation of inflammatory mediators, also needs more attention.
The recently reported secretion of APE1 in the extracellular environment also plays a role in LPS-induced inflammation (139). However, validation of the use of serum APE1 as a disease biomarker or prognostic marker requires further investigation. Identifying APE1 polymorphisms associated with immune diseases can clarify the full role of APE1 and the consequences of its malfunction in the immune system. Finally, APE1 inhibitors have been extensively studied for cancer treatment, and some studies have also identified their potential effectiveness in inflammatory diseases (174, 178). Thus, APE1 redox inhibitors, such as E3330 may prove to be good alternatives in inflammatory diseases or in controlling inflammation in neoplastic processes.
Funding
This work was supported by the Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq-Brazil) and Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES-Brazil).
Publisher’s Note
All claims expressed in this article are solely those of the authors and do not necessarily represent those of their affiliated organizations, or those of the publisher, the editors and the reviewers. Any product that may be evaluated in this article, or claim that may be made by its manufacturer, is not guaranteed or endorsed by the publisher.
Statements
Author contributions
All authors listed have made a substantial, direct, and intellectual contribution to the work, and approved it for publication.
Acknowledgments
We are grateful to CNPq (Brazil) and CAPES (Brazil) for their financial support and fellowships to the authors.
Conflict of interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
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Summary
Keywords
cytokines, NF-κB, biomarker, innate immunity, DNA repair, inflammation, reactive oxygen species, oxidized DNA damage
Citation
Oliveira TT, Coutinho LG, de Oliveira LOA, Timoteo ARdS, Farias GC and Agnez-Lima LF (2022) APE1/Ref-1 Role in Inflammation and Immune Response. Front. Immunol. 13:793096. doi: 10.3389/fimmu.2022.793096
Received
11 October 2021
Accepted
07 February 2022
Published
28 February 2022
Volume
13 - 2022
Edited by
Clarissa Ribeiro Reily Rocha, Federal University of São Paulo, Brazil
Reviewed by
Gustavo Kajitani, Universidade Federal de Ouro Preto, Brazil; Dindial Ramotar, Hamad bin Khalifa University, Qatar
Updates
Copyright
© 2022 Oliveira, Coutinho, de Oliveira, Timoteo, Farias and Agnez-Lima.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Lucymara Fassarella Agnez-Lima, Lucymara.agnez@ufrn.br
This article was submitted to Molecular Innate Immunity, a section of the journal Frontiers in Immunology
Disclaimer
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