In the original article, there was a mistake in the description of the new combinations in the newly proposed genus (Table 5). Culture collection number for Alkalihalobacterium bogoriense was given as MG 22234 in the original manuscript. It is changed to LMG 22234. The strain number for the type strain Alkalihalobacillus okhensis was incorrect. The corrected Table 5 appears below.
Table 5
| New Name combination and etymology | Basonym | Description | Type strain |
|---|---|---|---|
| Description of the new combinations in the genusAlkalihalobacterium | |||
| Alkalihalobacterium alkalinitrilicum comb. nov. (Type species of this genus) (al.ka.li.ni.tri'li.cum. N.L. n. alkali (from Arabic al the; qaliy soda ash) alkali; N.L. masc. adj. nitrilicus pertaining to nitriles; N.L. neut. adj. alkalinitrilicum alkaliphile utilizing nitriles) | Bacillus alkalinitrilicus (Sorokin et al., 2008) Patel and Gupta, 2020 | The description of this taxon is as given by Sorokin et al. (2008) | ANL-iso4T (=DSM 22532= NCCB 100120 = UNIQEM U240) |
| Alkalihalobacterium bogoriense comb. nov. (bo.gor.i.en′se. N.L. neut. adj. bogoriense pertaining to Lake Bogoria, a soda lake in Kenya) | Alkalihalobacillus bogoriensis (Vargas et al., 2005) Patel and Gupta, 2020 | The description of this taxon is as given by Vargas et al. (2005) | LBB3T (=ATCC BAA-922 = LMG 22234) |
| Description of the new combinations in the genusHalalkalibacterium | |||
| Halalkalibacterium halodurans comb. nov. (Type species of this genus) (ha.lo.du'rans. Gr. n. hals halos salt; L. pres. part. durans enduring; N.L. part. adj. halodurans salt-enduring) | Alkalihalobacillus halodurans (ex Boyer et al., 1973) (Nielsen et al., 1995) Patel and Gupta, 2020 | The description of this taxon is as given by Nielsen et al. (1995) | PN-80T (=ATCC 27557 = CIP 105296 = DSM 497 = LMG 7121 = NRRL B-3881) |
| Halalkalibacterium ligniniphilum comb. nov. (lig.ni.ni'phi.lum. N.L. neut. n. ligninum lignin; N.L. masc. adj. philus (from Gr. masc. adj. philos) friend, loving; N.L. neut. adj. ligniniphilum lignin-loving, isolated as a lignin degrader with lignin as a single carbon source) | Alkalihalobacillus ligniniphilus (Zhu et al., 2014) Patel and Gupta, 2020 | The description of this taxon is as given by Zhu et al. (2014) | L1T (= DSM 26145 = JCM 18543) |
| Description of the new combinations in the genusHalalkalibacter | |||
| Halalkalibacter krulwichiae comb. nov. (Type species of this genus) (krul.wich'i.ae. N.L. fem. gen. n. krulwichiae of Krulwich; named after American microbiologist Terry A. Krulwich who made fundamental contributions to the study of alkaliphilic bacteria) | Alkalihalobacillus krulwichiae (Yumoto et al., 2003) Patel and Gupta, 2020 | The description of this taxon is as given by Yumoto et al. (2003) | AM31DT (=DSM 18225 = IAM 15000 = JCM 11691 = NBRC 102362 = NCIMB 13904) |
| Halalkalibacter oceani comb. nov. (o.ce.a'ni. L. gen. masc. n. oceani, of an ocean, referring to its optimal growth under marine conditions) | Alkalihalobacillus oceani (Song et al., 2016) Gupta et al., 2020 | The description of this taxon is as given by Song et al. (2016) | SW109T (=CGMCC 1.12347 = DSM 100579) |
| Halalkalibacter hemicellulosilyticus comb. nov. (he.mi.cel.lu.lo.si.ly'ti.cus N.L. neut. n. haemicellulosum, hemicellulose; Gr. masc. adj. lytikos, able to loosen, able to dissolve; N.L. masc. adj. hemicellulosilyticus, hemicellulose-dissolving) | Alkalihalobacillus hemicellulosilyticus corrig. (Nogi et al., 2005) Patel and Gupta, 2020 | The description of this taxon is as given by Nogi et al. (2005) | C-11T (=DSM 16731 = JCM 9152) |
| Halalkalibacter nanhaiisediminis comb. nov. (nan.hai.i.se.di'mi.nis. N.L. neut. n. nanhaium Nan Hai, the Chinese name for the South China Sea; L. neut. n. sedimen -inis a sediment; N.L. gen. n. nanhaiisediminis of a sediment from the South China Sea) | Alkalihalobacillus nanhaiisediminis (Zhang et al., 2011) Patel and Gupta, 2020 | The description of this taxon is as given by Zhang et al. (2011) | NH3T (=CGMCC 1.10116 = DSM 27953 = JCM 16507) |
| Halalkalibacter wakoensis comb. nov. (wa.ko.en'sis. N.L. masc. adj. wakoensis of Wako, a city in Japan) | Alkalihalobacillus wakoensis (Nogi et al., 2005) Patel and Gupta, 2020 | The description of this taxon is as given by Nogi et al. (2005) | N-1T (=DSM 2521 = JCM 9140) |
| Halalkalibacter okhensis comb. nov. (ok.hen'sis. N.L. masc. adj. okhensis pertaining to Port Okha, a port of the Dwarka region in India, where the type strain was isolated) | Alkalihalobacillus okhensis (Nowlan et al., 2006) Patel and Gupta, 2020 | The description of this taxon is as given by Nowlan et al. (2006) | Kh10-101T (=ATCC BAA-1137 = DSM 23308 = JCM 13040) |
| Halalkalibacter akibai comb. nov. (a.ki.ba'i. N.L. gen. n. akibai of Akiba, named after the Japanese microbiologist Teruhiko Akiba, who made fundamental contributions to the study of alkaliphilic bacteria) | Alkalihalobacillus akibai (Nogi et al., 2005) Patel and Gupta, 2020 | The description of this taxon is as given by Nogi et al. (2005) | 1139T (=ATCC 43226 = DSM 21942 = JCM 9157) |
| Halalkalibacter kiskunsagensis comb. nov. (kis.kun.sag.en'sis N.L. masc. adj. kiskunsagensis, referring to the name of Kiskunság National Park in Hungary, the location of the sampling site) | Alkalihalobacillus kiskunsagensis (Borsodi et al., 2017) Gupta et al., 2020 | The description of this taxon is as given by Borsodi et al. (2017) | B16-24T (=DSM 29791 = NCAIM B.02610) |
| Halalkalibacter urbisdiaboli comb. nov. (ur.bis.di.a'bo.li. L. fem. n. urbs, city; L. masc. n. diabolus, devil; N.L. gen. n. urbisdiaboli, of Devil City) | Alkalihalobacillus urbisdiaboli (Liu et al., 2019) Gupta et al., 2020 | The description of this taxon is as given by Liu et al. (2019) | FJAT-45385T (=CCTCC AB 2016263 = DSM 104651) |
| Halalkalibacter alkalisediminis comb. nov. (al.ka.li.se.di′mi.nis. N.L. n. alkali (from Arabic al the; qaliy soda ash) alkali; L. gen. n. sediminis of sediment; N.L. gen. n. alkalisediminis of alkaline sediment) | Alkalihalobacillus alkalisediminis (Borsodi et al., 2011) Patel and Gupta, 2020 | The description of this taxon is as given by Borsodi et al. (2011) | K1-25T (=DSM 21670 = NCAIM B.02301) |
| Description of the new combinations in the genusShouchella | |||
| Shouchella clausii comb. nov. (Type species of this genus) (clau′si.i. N.L. gen. n. clausii of Claus, named after Dieter Claus, the German bacteriologist who made fundamental contributions to the taxonomy of Bacillus) | Alkalihalobacillus clausii (Nielsen et al., 1995) Patel and Gupta, 2020 | The description of this taxon is as given by Nielsen et al. (1995) | PN-23T (=ATCC 700160 = CCUG 47262 = CIP 104718 = DSM 8716 = LMG 17945 = NCIB 10309 = NCIMB 10309) |
| Shouchella xiaoxiensis comb. nov. (xi.a.o.xi.en′sis. N.L. fem. adj. xiaoxiensis pertaining to Xiaoxi National Natural Reserve, China, the source of the sample from which the type strain was isolated) | Alkalihalobacillus xiaoxiensis (Chen et al., 2011b) Patel and Gupta, 2020 | The description of this taxon is as given by Chen et al. (2011b) | DSM 21943T (=JSM 081004 = CCTCC AA 208057) |
| Shouchella alkalilacus comb. nov. (al.ka.li.la'cus. N.L. n. alkali (from Arabic al the; qaliy soda ash) alkali; L. gen. masc. n. lacus, a lake; N.L. gen. masc. n. alkalilacus, of an alkaline lake) | Alkalihalobacillus alkalilacus (Singh et al., 2018) Gupta et al., 2020 | The description of this taxon is as given by Singh et al. (2018) | AK73T (=JCM 32184 = KCTC 33880 = MTCC 12637) |
| Shouchella rhizosphaerae comb. nov. (rhi.zo.sphae'rae. N.L. gen. n. rhizosphaerae of the rhizosphere) | Alkalihalobacillus rhizosphaerae (Madhaiyan et al., 2011) Patel and Gupta, 2020 | The description of this taxon is as given by Madhaiyan et al. (2011) | SC-N012T (=DSM 21911 = NCCB 100267) |
| Shouchella patagoniensis comb. nov. (pa.ta.go.ni.en'sis. N.L. fem. adj. patagoniensis pertaining to Patagonia, in Argentina, where the type strain was isolated) | Alkalihalobacillus patagoniensis (Olivera et al., 2005) Patel and Gupta, 2020 | The description of this taxon is as given by Olivera et al. (2005) | PAT 5T (=ATCC BAA-965 = DSM 16117) |
| Shouchella miscanthi comb. nov. (misc.an'thi. N.L. gen. masc. n. miscanthi, of Miscanthus sacchariflorus, where the type strain was isolated) | Alkalihalobacillus miscanthi (Shin et al., 2020) Gupta et al., 2020 | The description of this taxon is as given by Shin et al. (2020) | AK13T (= DSM 109981 = KACC 21401) |
| Shouchella plakortidis comb. nov. (pla.kor′ti.dis. N.L. gen. n. plakortidis of Plakortis, a genus of sponges) | Alkalihalobacillus plakortidis (Borchert et al., 2007) Patel and Gupta, 2020 | The description of this taxon is as given by Borchert et al. (2007) | P203T (=DSM 19153 = NCIMB 14288) |
| Shouchella oshimensis comb. nov. (o.shi.men'sis. N.L. fem. adj. oshimensis from Oshima, the region where the micro-organism was isolated) | Alkalihalobacillus oshimensis (Yumoto et al., 2005) Patel and Gupta, 2020 | The description of this taxon is as given by Yumoto et al. (2005) | K11 T(=DSM 18940 = JCM 12663 = NCIMB 14023) |
| Shouchella lehensis comb. nov. (le.hen'sis. N.L. fem. adj. lehensis pertaining to Leh, in India, where the type strain was isolated) | Alkalihalobacillus lehensis (Ghosh et al., 2007) Patel and Gupta, 2020 | The description of this taxon is as given by Ghosh et al. (2007) | MTCC 7633T (=MLB2 = JCM 13820 = LMG 24751 = DSM 19099) |
| Shouchella shacheensis comb. nov. (sha.che.en'sis. N.L. fem. adj. shacheensis pertaining to Shache County, Xinjiang Province, China, the source of the sample from which the type strain was isolated) | Alkalihalobacillus shacheensis (Lei et al., 2014) Patel and Gupta, 2020 | The description of this taxon is as given by Lei et al. (2014) | HNA-14T (=DSM 26902 = KCTC 33145) |
| Shouchella lonarensis comb. nov. (lo.nar.en′sis. N.L. fem. adj. lonarensis of or belonging to Lonar lake, India, from where the type strain was isolated). | Alkalihalobacillus lonarensis (Reddy et al., 2015) Patel and Gupta, 2020 | The description of this taxon is as given by Reddy et al. (2015) | LMG 27974T (=CGMCC 1.12817 = KCTC 33413 = 25 nlg) |
| Shouchella hunanensis comb. nov. (hu.nan.en'sis. N.L. fem. adj. hunanensis, pertaining to Hunan Province, PR China, the source of the sample from which the type strain was isolated) | Alkalihalobacillus hunanensis Patel and Gupta, 2020 | The description of this taxon is as given by Patel and Gupta (2020) | JSM 081003T (=DSM 23008 = KCTC 13711) |
| Shouchella gibsoni comb. nov. (gib.so'ni.i. N.L. gen. masc. n. gibsonii, of Gibson, named after the British bacteriologist Thomas Gibson) | Alkalihalobacillus gibsonii (Nielsen et al., 1995) Gupta et al., 2020 | The description of this taxon is as given by Nielsen et al. (1995) | PN-109T (=ATCC 700164 = CIP 104720 = DSM 8722 = LMG 17949) |
| Description of the new combinations in the genusPseudalkalibacillus | |||
| Pseudalkalibacillus decolorationis comb. nov. (Type species of this genus) (de.co.lo.ra.ti.o'nis. L. gen. n. decolorationis of discoloration) | Alkalihalobacillus decolorationis (Heyrman et al., 2003) Patel and Gupta, 2020 | The description of this taxon is as given by Heyrman et al. (2003) | LMG 19507T (=DSM 14890) |
| Pseudalkalibacillus macyae comb. nov. (ma'cy.ae. N.L. fem. n. macyae of Macy, named after the late Professor Joan M. Macy, Chair of Microbiology, La Trobe University, in tribute to her research in the area of environmental microbiology) | Alkalihalobacillus macyae (Santini et al., 2004) Patel and Gupta (2020) | The description of this taxon is as given by Santini et al. (2004) | JMM-4T (=DSM 16346 = JCM 12340) |
| Pseudalkalibacillus caeni comb. nov. (cae'ni. L. gen. neut. n. caeni, of mud, referring to the source of isolation) | Alkalihalobacillus caeni (Mo et al., 2020) Gupta et al., 2020 | The description of this taxon is as given by Mo et al. (2020) | HB172195T(=CGMCC 1.16730 = JCM 33411) |
| Pseudalkalibacillus hemicentroti comb. nov. (he.mi.cen.tro'ti. N.L. gen. n. haemicentroti of Haemicentrotus (Haemicentrotus pulcherrimus, a sea urchin), the source of isolation of the organism) | Alkalihalobacillus haemicentroti (Chen et al., 2011a) Patel and Gupta, 2020 | The description of this taxon is as given by Chen et al. (2011a) | JSM 076093T(=DSM 23007 = KCTC 13710) |
| Pseudalkalibacillus hwajinpoensis comb. nov. (hwa.jin.po.en'sis. N.L. masc. adj. hwajinpoensis of Hwajinpo, a beach of the East Sea in Korea, where the type strain was isolated) | Alkalihalobacillus hwajinpoensis (Yoon et al., 2004) Patel and Gupta, 2020 | The description of this taxon is as given by Yoon et al. (2004) | SW-72T(=DSM 16206 = JCM 11807 = KCCM 41641 = LMG 24749) |
| Pseudalkalibacillus algicola comb. nov. (al.gi′co.la. L. fem. n. alga alga; L. suff. –cola (from L. masc. n. incola inhabitant, dweller; N.L. masc. n. algicola algae-dweller) | Alkalihalobacillus algicola (Ivanova et al., 2004) Patel and Gupta, 2020 | The description of this taxon is as given by Ivanova et al. (2004) | KMM 3737T(=CIP 107850) |
| Pseudalkalibacillus berkeleyi comb. nov. (ber′ke.ley.i. N.L. berkeleyi is named after Roger C. W. Berkeley (1937–2010), who is the famous English microbiologist who greatly contributed to the Bacillus taxonomy) | Alkalihalobacillus berkeleyi (Nedashkovskaya et al., 2012) Patel and Gupta, 2020 | The description of this taxon is as given by Nedashkovskaya et al. (2012) | KMM 6244T(=KCTC 12718 = LMG 26357) |
| Description of the new combinations in the genusAlkalicoccobacillus | |||
| Alkalicoccobacillus murimartini comb. nov. (Type species of this genus) (mu.ri.mar.ti′ni. L. masc. n. murus wall; N.L. gen. n. martini of Martin (masc. name of a saint); N.L. gen. n. murimartini from the wall of the (St.) Martin church in Greene-Kreiensen, Germany) | Alkalihalobacillus murimartini (Borchert et al., 2007) Patel and Gupta, 2020 | The description of this taxon is as given by Borchert et al. (2007) | NCIMB 14102T (=LMG 21005) |
| Description of the new combinations in the genusAlkalihalophilus | |||
| Alkalihalophilus pseudofirmus comb. nov. (Type species of this genus) (pseu.do.fir′mus. Gr. adj. pseudês false; L. masc. adj. firmus strong, firm, and also specific epithet; N.L. masc. adj. pseudofirmus the false firmus, referring to physiological similarities to Bacillus firmus) | Alkalihalobacillus pseudofirmus (Nielsen et al., 1995) Patel and Gupta (2020) | The description of this taxon is as given by Nielsen et al. (1995) | PN-3T (=DSM 8715 = ATCC 700159) |
| Alkalihalophilus lindianensis comb. nov. (lin.di.an.en'sis. N.L. masc. adj. lindianensis pertaining to Lindian, a county in Heilongjiang Province, China, the source of the sample from which the type strain was isolated) | Alkalihalobacillus lindianensis (Dou et al., 2016) Patel and Gupta, 2020 | The description of this taxon is as given by Dou et al. (2016) | 12-3T (=CGMCC 1.12717 = DSM 26864) |
| Alkalihalophilus marmarensis comb. nov. (mar.ma.ren′sis. N.L. masc. adj. marmarensis pertaining to the region of Marmara, where the type strain was isolated) | Alkalihalobacillus marmarensis (Denizci et al., 2010) Patel and Gupta, 2020 | The description of this taxon is as given by Denizci et al. (2010) | GMBE 72T (=DSM 21297 = JCM 15719) |
Description of the new combinations in the newly proposed genus.
In the original article, there was an error in the naming of a family species, Bacilla was written where it should be Bacillaceae. A correction has been made to Materials and Methods, Genome Sequences Used in This Study and Pathway Analysis, paragraph one:
“Type strains of 41 species of the genus Alkalihalobacillus (28 type strains), Desertibacillus, and Anaerobacillus and type species of the different genera of the family Bacillaceae, whose genomes were available in the public database, were considered in this study. Fifty genomes of non-type strains of genus Alkalihalobacillus were also included in this study. Streptococcus gordonii ATCC 10558T and Streptococcus agalactiae ATCC 13813T genomes were used to root (outgroup) the phylogenetic tree. The genome of strain MEB199T and Desertibacillus haloalkaliphilus KJ1-10-99T were sequenced under this study, and all the other genomes were downloaded from the PATRIC database (Supplementary Table 1). The functional annotations of each genome was carried out using EggNOG-mapper v2 (Cantalapiedra et al., 2021). The pathway was mapped using the KEGG Orthology (KO) Database3 for all the selected genomes. Heatmap to visualize the distribution of pathways across all the members of the genus Alkalihalobacillus was constructed using heatmapper.4”
The authors apologize for these errors and state that this does not change the scientific conclusions of the article in any way.
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Statements
References
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Summary
Keywords
alkaliphilic bacteria, Alkalihalobacterium, Alkalihalobacillus, taxogenomic, Lonar lake, Shouchella, Halalkalibacterium, Halalkalibacter
Citation
Joshi A, Thite S, Karodi P, Joseph N and Lodha T (2022) Corrigendum: Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera. Front. Microbiol. 13:871596. doi: 10.3389/fmicb.2022.871596
Received
08 February 2022
Accepted
22 February 2022
Published
23 March 2022
Volume
13 - 2022
Edited by
Iain Sutcliffe, Northumbria University, United Kingdom
Reviewed by
Aharon Oren, Hebrew University of Jerusalem, Israel
Updates
Copyright
© 2022 Joshi, Thite, Karodi, Joseph and Lodha.
This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
*Correspondence: Tushar Lodha tushar.lodha@nccs.res.inAmaraja Joshi amaraja@nccs.res.in
†These authors have contributed equally to this work
This article was submitted to Evolutionary and Genomic Microbiology, a section of the journal Frontiers in Microbiology
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